sema3d (sema3d,LOC107559401,LOC107723940,LOC107672594,LOC107729993)


Basic Information

Item Value
gene id sema3d
gene name sema3d,LOC107559401,LOC107723940,LOC107672594,LOC107729993
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 21296098 ~ 21328330 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216928.1
CTAATTGGCGCTCTCGGCTCGAGCCAGCAGCCACGAGCGCCACAGACGCGGATGCCTCAGCCAAATTCACAGAGTCCGGTCACACTCAGAGAACAGTTCAttagtctttttatttgttttcgtTTTACGTGTCTCCCCCCATTAAGTTGAAGAGAGCTTAGTTTTGGGAACGGTGGACGCGTCTTGAAGACATTTCAAGCATGACTTTGGATAATAACGGATCTTGAAGTGTCAAACTGCGCCTCAGACTTCCAGAAAATACCCAAGCTCCCACAGGTCCGCAGCGGCAGAACTATCCTCTCTCATCATGAAAACTGCAGAGGATCCAGACAAACCAAGACATCAGCAGCTCCAGATGGGGTGGTTCTCTAGTGTCTGGTGGTTTACACTAGTGATGCTCTTCTTCTCTCTGCCGGAGGTGAACTCTATGAAGGAGAGTGTGCCAAGAGTTAAACTTGGCTACAAAGAGCTGATCCATTCTCGAAGCGTGGTGCCATTTGTGGGTTCTAGCGAGGGGCAGCGGTTTCTGACAGTCCTGTTGGATGAAGAGAGAAGCCGATTACTGCTGGGAGCCAAAGACCACATCTACCTACTGGACCCAGAcgacataaataaacatcccaAAAAGCTGAGCTGGCCAGCTCCAAGAGACAGGGTGGATATGTGTATACTAGCTGGCAAGAACCCTCTCACCGAATGTGCTAATTTCATACGAGTTTTACACAGCTATAATCGAACTCATGTCTACGTCTGTGGTACCGGAGCGTTCCACCCCACTTGTGCTTTCttagaggtcaaaggtcacaaaGAGGACGGCTGGCTGCACCTACACAGCAACACTGTGGAATCCGGCCGAATGAAATGTCCTTTTGATCCACACCAGCCCTTTGCTTCAGTACTCACAGatCAGTATCTCTATGCTGGCACAGCGTCTGATTTCCTGGGCAAGGACAGCACTTTTAGCCGCTCTCTCGGCCCCCCAGACCAACAGTATATTCGCACAGACATTTCTGAGGACTACTGGATCAACGAGGGCAAGTTTATTTCTGCCCATCCCATCGCGGACACCTACAACCCTGACGATGACAAGATTTACTTCTTTTTCCGTGAGGCGTCTCGTGAAGGGAGCACTACAGACAAGAGCGTGCTGTCTCGTGTCGCCCGGATCTGCCGGAATGACATTGGAGGTTTGAGAAGTCTCACCAACAAGTGGACAACATTCCTCAAAGCAAGACTTGTGTGCTCCATTCCTGGACCAGATGGTGTGGACACACACTTTGATGAGCTACaGGACATCTTTCTGCTCCCTAGCAGAGATGAAAAAAATCCAATGGTGTATGGAGTGTTCACCACCACCAGCTCTATCTTTAAAGGATCAGCAGTATGCGTCTACAACATGGAAGACATCCGTGCTGTGTTTAATGGACCGTATGCTCATAAAGAGGGACCAGACCATCGCTGGGTGGAATATGAAGGCAGAATTCCCTACCCAAGACCAGGCACTtgcCCCAGTCGGACCTACGATCCTCATATAAAAACGACTAAAGACTTTCCAGATGAAGTCATCAGTTTTATACGGCTGCACCCGCTAATGTACCGCTCTGTACACCCAATGACGGGCCGGCCAATTTTCACTCGTATCAATACAGAGTATCGGCTTACTCAGATTGTAGTGGACCGTGTGGCAGCTGAGGATGGACAGTATGCTGTTATGTTCTTGGGCACAgATATGGGATCAGTTTTGAAGGTTGTCAGCATCACTCAAGAAAACTGGTCCACGGAGGAGATCATCTTAGAGGAGCTTCAGGTGTTCAAGAGTCCCTCACCCGTCCTCAACATGGAAATCGCCTCAAAGCAGcagCAGCTGTTTGTTGGAGGAAGCGACGGGTTGGTGCAGGTGTCCCTTCACAGGTGCCATATTTATGGGCAGGGCTGTGCAGAATGCTGCCTGGCTAGAGACCCTTACTGCGCTTGGGACGGCACCCAGTGCTCCAGATACATTCCAGCCTCCAAGAGGAGGGCCAGAAGGCAGGATATCAAACACGGAGACCCATCTAGCCATTGCTGGGACACAGAAGATGTGTTAGGGAGGAATGTCGAGGAGAAGGTGTTGTATGGAGTAGAGAGTAACTCCTCTTTTCTTGAGTGCGTTTCAAAATCCCAGCAGGCCTTGATCCGCTGGTTCATACTGAAGCCAGGAGCGGACCACCGTCAAGAGatcaAACCAGACGAGCGTGTGCTGATAACCGAGCGAGGTTTGCTGATTCGTTGGCTCCAGCGTAGCGATGCAGGTTCGTACTTTTGCACGTCTCAGGAGCACAGCTTTACCCGTACCCTCCTCCACCTCTCTCTTCACGTCCTGGACCGCGGACAGATCCAAGCACACCAACCTGCTACACGGGAGTCATCAGAGAATCCACCCGTGACCGAACCTCGTCAGCGCTATAAGGACTACTTGCGCATGTTGAGCGGCCCCGTACGCTCTCTGGATGAGTACTGCGAAACACTCTGGCACAAAGAGAAGAAGCAAAAACAGAAGGGCAAATGGAAGCATGTTCAAGAGCTCCGCAAGAGCAGGAACCGACGCCACCACTAGAGGTGCCGGTGAGGCCTGGATTCGAATGTGAGGTTAGACGGGTCACAATGCCCATTGAGCCTCTGGATGTGGATTAAATGAACTCTAAACcaaatacaaagacaaaaatgaattatatcTTGACCAGTCAAGCAAAAAGTCTTTCAGAAGTATCAGTGAAATGACACATTAATCTCGTTTTCGTTTGGACCAGTCCCTTAAATAAAGTGACGCACATATTCtttgccatttaaaaatgaacttttcgcgaaatattgaaaatatgtttttattagttttattaaagtCCCTTTGGGCAAGGCATGGTATaccaaaattatatttctgtaaatctataaacaatgttaaacaaatattttttcattgtaaaaatgtCTGGATTGGGGACGTTTTTCGAAGCTGCATATCACAAGTTCATTGCGCTTTAATTTTAACCAAGAATAAAATTGCATTCATGTtgaatgtatgtaaatattta

Function

symbol description
sema3d Enables neuropilin binding activity. Acts upstream of or within several processes, including animal organ development; axon development; and enteric nervous system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including central nervous system; hindbrain neural keel; neural crest; notochord; and posterior lateral line system. Orthologous to human SEMA3D (semaphorin 3D).

NR:

description
PREDICTED: semaphorin-3D-like

GO:

id name namespace
GO:0021534 cell proliferation in hindbrain biological_process
GO:0007508 larval heart development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048538 thymus development biological_process
GO:0051216 cartilage development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0030516 regulation of axon extension biological_process
GO:0031101 fin regeneration biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0060272 embryonic skeletal joint morphogenesis biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0007413 axonal fasciculation biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216928.1 True 3074 mRNA 0.48 19 21296098 21328330

Neighbor

gene id symbol gene type direction distance location
elapor2a LOC107729994,LOC107671159,LOC107665539,LOC107559856,LOC565175 coding upstream 102129 21176917 ~ 21193969 (+)
tmem243a tmem243a,LOC107560025,LOC107665549,LOC107710379 coding upstream 119306 21174591 ~ 21176792 (+)
si:dkey-5i3.5 LOC107710366,LOC107671161,LOC107559433,LOC107665548,LOC107599782 coding upstream 121777 21167515 ~ 21174321 (+)
impdh1a impdh1a,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC107671158,LOC108442450 coding upstream 141500 21136806 ~ 21154598 (+)
cpt1b cpt1b,LOC107686536,LOC107599889,LOC107671150,LOC107710383,LOC107559523 coding upstream 315399 20973515 ~ 20980699 (+)
sema3ab sema3ab,sema3a,LOC107665547,LOC107672583 coding downstream 50598 21378928 ~ 21408841 (+)
sema3e sema3e,LOC107665550,LOC107723938,LOC107563409,LOC107738421,LOC107559846 coding downstream 100397 21428727 ~ 21466593 (+)
pclob LOC107559387,LOC107723935,LOC107672584,LOC107665542,LOC107738431,LOC107563410 coding downstream 148998 21477328 ~ 21546134 (+)
LOC122363109 cacna2d1,LOC107672590,LOC107738419,LOC107673139 coding downstream 221815 21550145 ~ 21638322 (+)
LOC122323126 LOC107738418,LOC107723941,LOC107672595,LOC107563412,LOC100334116,LOC107673134,LOC107559839 coding downstream 327991 21656321 ~ 21681835 (+)
G128158 NA non-coding upstream 130025 21165272 ~ 21166073 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding upstream 133347 21161886 ~ 21162751 (+)
G128149 NA non-coding upstream 167065 21128553 ~ 21129033 (+)
G128148 NA non-coding upstream 214807 21080769 ~ 21081291 (+)
G127935 NA non-coding upstream 358656 20894777 ~ 20937442 (+)
G128216 NA non-coding downstream 138448 21466778 ~ 21468553 (+)
G128251 NA non-coding downstream 310080 21638410 ~ 21641629 (+)
LOC122323089 NA non-coding downstream 366116 21694446 ~ 21835021 (+)
G128318 NA non-coding downstream 705341 22033671 ~ 22068953 (+)
G128329 tspan9a,LOC107559293,LOC107738414,LOC107587031,LOC107672591,LOC107084745,LOC108414266 non-coding downstream 781143 22109473 ~ 22110458 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 655039 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 695579 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 739471 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 746741 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 1202497 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1072614 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1106476 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2128770 23457100 ~ 23736848 (+)
G128858 NA other downstream 3121435 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 3255515 24583845 ~ 24588337 (+)

Expression


Co-expression Network