lrriq1 (lrriq1,LOC107672332,LOC107740429,LOC107583887)


Basic Information

Item Value
gene id lrriq1
gene name lrriq1,LOC107672332,LOC107740429,LOC107583887
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24769396 ~ 24793099 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263884.1
CGCGAATGTACAAACATGAGGGAGTTGGTTGACTTGATCTCGGAATGATGGATGACATCGAAGAGGCAATAAATGAGGAGCTGATGAAATTAAACCTACATCCTTCTgaaaatgattcagagtcagaCGATGACGACTTCACTGTTTTGAATCTGCATGTGGAAGATGAGCTGCCTGCCTCTGTACTCACATATGTTGAAGCTTCAAGAAATCGAATAAATGCCTTCGAACAATTAATTCTTGAAGATGTTGAAGAAAAGGAGTTCTCAAGCCAGAACCCGTCTCACCTTAACCACAGTGACAATCCTACAAATGAGCCGGCTTCAGATTTCATAGATGACCCCATAAAGTGGAAAGAGCAAGTTATCTCTGAATTAGTGGAACATATTGGACATCTAAAAGACATTGTGCCACAGAATGCCGACTGGGAGATTCCGAATATGTCAGGCATGGAagatgatgtatacaCTGAGAGTGAACTGCAGATTAGTCTTGAGTGGAGAGAATTAGAGAAAAGACTAAGAAAGGAAGAGGAGCAGAAATTAGCAGCACAGGAGATAGAAAGAGAGCTGCATTTGGActcagaaagaaaagaagaagaaaggaggAGGAGAGCACTGATGAAGTTTGAGGAGGAGTTGAAAAAGATAGAGGATGCCACTCTAAATGTTGGAGTGAAAAATAAAGTTCACGACGCAGAAGATCTTCAGCTGGAGCTGGATAAACAGCAGACATTAATAAGGAAACTTGAGGAGCAGATGGAGGAGGAAAAACTGGCTTTTGAGAAGGCTCAGGAGGAGGAGAGTATGAGAAGCCGGAAACTTCATTGCACAGCAGCAACAAAGATTCAAGCTGCTCTCAGAGGAACATTAGTGCGCCGCTGGAGCAAAACAGAGcttaagagaaagaaaaaagaggagaagagacttgaggaggagaggagggaaTGGGAGAAGATGAAGAAGGAAAGAGAAcaggagagaaacaggattgagCAAGAAGAGCGCGCTCAGAGAGAGGAGATGGAGAGACGCAGAACAGATTATGAAAAAGCTAAAAAACAAGAGCGCCATCGTCTGGAGAAGGAGCAAAGACTTGAACAGCAGAAGAGGAAAGCGGATGAAGatgagaaaaggaaagaaatgcaggaggaaaagcaaaacaacatcaCAAGTGTAAAAGAAGATTGCAGAAGACAGGAAGAGGATGTAGACAAGAcgaataaagaaaatgaaagtgttaaaGTGGAAAGGAGTAGTCAGGTGAAGGATAAAGGTaaaagagaggaagaaataGGGGAATTGGAGAGCAAAGAAAATGagttaaatgtaagaaaaatagAAGCTAATAATGCAAGAATTGGGCATGAGAAGAACATGGAAAACGACAAGAATAAGATGAAAAAACAGGACAAAACTAAAAGCATAAACACAGAAGACACTGAAGGATTAGATGATATGAGGACACAAACAAAGAGTGATAAAGACAGAATAAAGAActatgaagaagaaaaaacagttgAAAGCAGTGGAGAGCTTGACTCTCAGGAAAATCTCTCACAGTCAAGAAAAAGCagtaaaattttcaaaaccactACAGAGTCACACATAAATGTACATCAAGGACTCTCCAGTGATGTTGGTATTAGTCCAGTGGGTTCCTTGATTGTTGCAGATCATCTAAGTGTTAAAGAAAATACGGGCTTGACTGTGCAGGCATCTGATTTGGCTACTGTAGCACCTGAGATGGACACCAGGGGGCATCACTATACTACAACTTTTGAGCTTGAGGACCATAAACCAAAAATCCAAGAATCAATTTCAATATGTCTGCCTGACAGCACAGAGCAGAAGCGACTGGCCTGGATGATGAATTGCAATCCCTGGTCCGCACTCTCATTGCAGAATAAAAGGAAGGGGTCTTCAAACCAACAGCAGTCCCAAAAAAGAGGTCCAAGAAAAAGAAGAGTTCCCAGTTTACCCCCTCTATCTGTGGACACTATTCTCAAAACAGGACATTGGAGCTCTCTCAAACAGGTTACGACAGTGACCCTGGAAGACCTACCAGGATGTAGCCTGTCCACACTGTCTGAGTGTAACAAACTGCAGACTTTGACCCTCAGACGCTGCGGACTCACTTCTTTGGATGGACTGAATCAGTGTGCTCAGATCAGATATATTGATGTACAAgAGAACTCAATTACCTATGTGGATTGTGGAGGTCTGGCCAACCTTCAGGTCCTCCTCCTGGGCAGGAACCAACTGATGAACATCCATGGTCTTGATGGAGCTGAAAACCTGCAAACTCTTCAGCTCTCACACAACAACATCTCTCGCATAAGTGGTTTAGGACCCCTGAAAATGCTTTTGCGATTATCAGTGGACCATAACCAGCTGCTCAGCACGAGAGGATTGAGCGAAATTTATACCCTTCTCCATCTGGACTGTTCCTACAACCACCTAAGCCACGTTGAGGGTTTGGAGAATTGTGCTCTGCTTAACACACTGAACCTCAGAGGAAACAGTCTGACTGAGCTGCCTGTCCTGCAGAACCATGTTCTTCTGAGGGACCTGTACTTGGATGACAATCTTCTATCTTCTCTTGATGATCTGGAATCCTATTGGCTGCCTTTGCTCCAAAACCTTTCCGTGGCCCATAACAGTGTAACTCATTTAATTCCACTCTTGGACCTGGTGTCTCTGAGGATGCTGGATTCCAGTCACAACTGTCTGTCAGATTTGCAGAACACTTGTCTGAATCTTCAGGAATGCAGCAGTCTTCAAGAGCTTAACCTGACTGGTAACCCACTACAGCAGGAAAGCAACTGGAGGTTCTTGCTTTTGGAGACAGTGCCTGGCTTGATTAAGTTGAATAATGAGCAGACTGCCGCTGCCGCAGTGTCTCGTAGATGTCCAGAACAGCGGTGGAGTTTCCAGGCCCTCTGTCAAGCACAGCAAGAGCAACGAGATTCACTTCTCCAGCAGCAAAAGATGGAGATTAGTTCTGCACCTTCGCAACATGACGCCCAGCTTCTTGCCATTGGCCACCAAGCAGACCTGTTCAGATTGGCGGTGGACCAGCGTTATGCCCATGAATATGGCGACAGCTGTGTCACAGAGGATTCAACACTGGTGGCAGCTGCTAACAGTAGTTCATGCAGTTATTTTGAAGCATCTTTATCACACGGACAAAATACAGAGATGCATCTCCGGGATTCAGCAGATTGTCAGAAACAGTTTGAGCTACAATCTGCTGACTGCGTGCAGACACAAAGTGAGAAGGAACCTGTTCAGGCACTGAACCTTATAATAGCTGCAGCTGTGGCGATCCAGCGATGCTGGCGAAGGAGATGCGTATTGCAGAGACGTGAGGGCCTCCCAAGCTTAATTGAAAAAACTAACACAAAATCACATCTTTGTAAGTTGGAAGATACCTGCATTGGCGGGCCTGAGATGGAACGTGCTGCTGTTGTTATTCAGGCTGTATGGAGGGGCTGCGTTCTGCGGAAAAAACTGGCCCGTGCTCTAGCTGCTGCTCAGATCACAGAAAGCGATGAGGACTTAGAAGAGGTGGACATGGACGAATTCATTTTTGATGAGAAAGTGCTGGAGAAAGACTGGATAAGCCTGGATTCCAAAGCCTTACCGGCCAGGATGATGCCATTTTCGGAACAGCTGCCGTTGCCAAAGCCTCCACTCCCTCTTCCGATTCAAGGGTCTCCAAAGACTCTATGTGTTTTTCCACTGCAGCCGAAACATGCCTGGTCAGATAATGAAGCCTGTTCGGAGCAAAGCTTGACGCCTCACCATAGTAGCAGATCAAGCCCCAAAACCAGAACCCTGCCTGAAGAATCAGAAAAAATTCTTAAAGAATGGGGGATCACTAATGAGTCTACTGCTCTTCTCATGCTGAAGAGATCCAACAAAATGAAAGGCAAGAAACAGAAGCAGAACAGGTTATTTGACCCAAATCCACGTCTGGCCCTGTTCAGAAGCCACAGTAACCAGTATGTTTCCAAAGAAACTCAAAGGATAACATGTCCAACTTTCAAGGACAACTTAAAAGTTCACGGAGCAGTGAATGAAGTTCACAAATTACCAAAAGCAGAGGAAAAACTATCTCACAACGAGAGAACGTACCAGTGGCTCCACACACAAGCAGTTCATCCCGATACAAACTCTGCAGGCACGGGGCGGGATCAATTCCTCCCTGATATTGGCCAGGATATTCTTAATGGTGGGAGGGTGCAGCTTGTGGCCATAGGGGAGAGAGACAGTGGAGGTTCAGGAGCAAGATTTTGGACTGATTCCGCTAGTGTCTCTCCACCTCTTAAAAAGCACACCCAGCCTCGAAGATACTCAGCTGAAAACACACAAACAGAAGTGTCGTCACCCCTAAGAGTCAATTCAGCGCCGACCCGAAATGAGCGCATTTCGTTCCGGGACAAACCGGTGCGACGCAGCGGAGGCTGGGGTGGAGGAAAGAAGAGAGCCAAATTGAACAAGTAAAAAGATAACTACATCAGCTTGTGTTTGTTGCACTGAGATAATATTGATTtagtttgttcttttgttttcgGCCCTTCATATTTGCGGCTGTGTATATATTCAGCGTGATGGATGTCTTGTTGATGTAAGCCCTTAACAAGACTTACAATGCTCATTTGATCTCTGCTGAAATTCCTTgcagctgctgtttttactaAAATCCAGCTTCCTCTCCTGCAAATGAATTAGAAGCAATGGATGAGATATAGCCTAAATATCTGCAGGCAGTCACAGGATATGTATTGCTTTCAAGTATCACTCCATTTAACATGAGCACTGCGAGCCATGGACTGGGTGGAAACCATTTACAAATGACATGCTTAATATGCAGACAATGACAGGCAATAGAAACCAGCTCGTTCCTGTtttaatttaccttttttttctttctttatactgggaatttgttgttttttaaagctcaaaataaGACAGTGCGCATTTAATGAAAGTAATATATCTGAGATCACTGTCAATAAACTATTTGCTTTATACACAGATCTGCCTCAAACACTTATATTGTAATATCTCAAAAAACGCATCTATGGCAAACAAGTccaataataagtaaaaaagaaatgcatgaatCAGAGTTAAAAGTGTTTTCTTTAGTGTTAGTGTTTGATAAGAGTAtcttgtttgtgtattttaaatttggatATCTAAAAGCTGAGTGTTCAAAACGGGTTGGAAAACTTTCTGGCACCAGCTTAAGGCTC

Function

symbol description
lrriq1 Predicted to enable protein kinase binding activity. Predicted to be active in cytoplasm. Orthologous to human LRRIQ1 (leucine rich repeats and IQ motif containing 1).

NR:

description
leucine-rich repeat and IQ domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263884.1 True 5266 mRNA 0.44 27 24769396 24793099

Neighbor

gene id symbol gene type direction distance location
LOC122362648 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 18293 24744865 ~ 24751103 (+)
LOC122362646 bhlhe41,LOC107686242,LOC107553967,LOC107730473,LOC107672284,LOC107583813,LOC107740304 coding upstream 28036 24739025 ~ 24741360 (+)
LOC122362647 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 85458 24677660 ~ 24683938 (+)
LOC122362651 bhlhe41,LOC107686242,LOC107553967,LOC107672284,LOC107730473,LOC107583813,LOC107740304 coding upstream 93547 24671802 ~ 24675849 (+)
LOC122362645 itpr2,LOC107672258 coding upstream 109446 24590903 ~ 24659950 (+)
alx1 alx1,LOC107672210,LOC107740463 coding downstream 2716 24795815 ~ 24801103 (+)
nts nts coding downstream 43148 24836247 ~ 24840156 (+)
eif4g2b eif4g2b,LOC107730533,LOC107569652,LOC107672256 coding downstream 197484 24990583 ~ 24999270 (+)
LOC122323238 NA coding downstream 202672 24995771 ~ 24995950 (+)
lyve1b NA coding downstream 212980 25006079 ~ 25008464 (+)
LOC122362654 NA non-coding upstream 32384 24735187 ~ 24737012 (+)
G129038 NA non-coding upstream 40417 24664451 ~ 24728979 (+)
LOC122362653 NA non-coding upstream 99552 24667484 ~ 24669844 (+)
G128863 si:ch211-219a15.3,LOC107553954,LOC107583920,LOC107740237,LOC107672306,LOC105898028 non-coding upstream 244342 24524527 ~ 24525054 (+)
G128859 NA non-coding upstream 310462 24458719 ~ 24458934 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding downstream 45963 24839062 ~ 24856231 (+)
G129127 NA non-coding downstream 207631 25000730 ~ 25000930 (+)
G129125 NA non-coding downstream 220651 25013750 ~ 25016984 (+)
LOC122362644 NA non-coding downstream 241019 25034118 ~ 25049605 (+)
G129134 NA non-coding downstream 249989 25043088 ~ 25043820 (+)
LOC122323037 NA other upstream 181059 24583845 ~ 24588337 (+)
G128858 NA other upstream 311836 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1032548 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2330717 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2357439 22400944 ~ 22411957 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 501644 25294743 ~ 25309740 (+)
mt2 NA other downstream 553293 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1128168 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 1159231 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 1435995 26229094 ~ 26332010 (+)

Expression


Co-expression Network