sema3e (sema3e,LOC107665550,LOC107723938,LOC107563409,LOC107738421,LOC107559846)


Basic Information

Item Value
gene id sema3e
gene name sema3e,LOC107665550,LOC107723938,LOC107563409,LOC107738421,LOC107559846
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 21428727 ~ 21466593 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263921.1
GCTGGCACGTGGAAGGGCAGTATTTCACAGAgccatagagagagagaggaaagagaggagGCTTCTTCTCATTAGAGGAGGTGGAAGCTCTCCAAGATCAGTGAGCTTGTTGTCTGACACGCTCGCACtcacacatttttatgagtTCGAGGAATGCATCGCCTGTGGTAAGAGTGACAGGAACAGTCAGCCAGGGTTGAGTCACAGCGTTGCGCTCAGTTTAGACACTTTCCTCACGCCGGAATCCACAGAAGCATCTCAAAACACTCCCTACGTGTCAATGAAGTGAGTTTCAGCGCACTGCTCTGATGACGGCAGACTCATTTTCTTCTGCAACCGGCAATTCAGTCATTCGGCGGATGGAGGCTGCCTGTGGTGGATCGTGAGGAGTCAGTGTGAGACGTTCAGAAGAGGAGTGCGTAAAGATGGCATGGGGTGTGTGGACCTTCGTGCTTTGCATGACTCTATGGATCTGCTCTGCAACTCAATCAGCAAAGACTGTGTATCCAAGATTACGTCTGTCTCACAAAGAGTTGTGGGAGCTGAACAGGACGAGAGTGTTTCAGGCCGGAGAGGGGCGTCTGCAGCACTACAGTATGTTACTGGATGAGACTCAGGAAAGGCTAATCATCGGAGGAAAAGACATACTGTACTCTCTCAATCTGGAGCGTATCACTGCCCCTCACAAAGAGaTTCACTGGCCGAGCTCTGAGGAGCAGGTGGGGGATTGTTTAATGCAGGGCAGAGAGAAGCCGGAATGTGCAAACTACATTAAGCTGGTGCAGCATTATAACAGCTCCCACCTCTTAGCATGTGGGACTGGGTCCTTCAGCCCAGTGTGTGCCTATGTCAGAGTGGGCCGTGGAACAGagCAGGAAGGAGAGTTCAGGCTGGAGTCTGATCACATAGAGAGCGGCAGAGGAAGGTGTCCATTCCACCCCAACAGCCCCTCAGCATCCACTATGTACCgtgggGAGTTGTTTGTTGGCTTGTACACTGATTATTGGGAGAACGATGCCGCTCTGTATCGTCTTGGCAACCGCAGTTTCATTAGGACTGAAGTGGGTGACAGACAGCAGCTGAATGAGCCCAAGTTTGTGGGTTCGGCAGTGATCCCTGACAATGATGATCCTGCTGATGATAAGGTCTACTACTTCTTCACGGAACGAGTGGCCAGCATGGATGGAGGAAATAAAGCCGTTTACACCAGAGTGGCCAGAGTCTGTGCGAATGACCAGGGTGGTCAGAGGATGCTGGTAAACAGATGGAGCTCTTTCTTGAAGACTCGTTTGATCTGCTCAGTGGCTGGACCCAACGGCATTGATACACACTTTGATGAGCTCGAGGATGTGTTTGTGCTGCGTaagaaagatgctaaaaatCCAGAGGTCTTCGGTCTGTTTAGCACCACCAGtgCCGTTTTTAAAGGATACGCGGTGTGCATGTATAACATGGAAGACATTCGTGCAGCTTTTAACGGGCCTTTTGCATACCGGGAACGGACTGACCACCACTGGAAGGTGTACGATGGCAGGGTCCCCTATCCACGACCTGGATCGTGCGCCAGTAAGATAAACGGAGGCCAGTTTTCCGGTTCAAAGGAGTATCCGGATGAGGTTCTGCGATTCGTGCGTTCCCATCCCCTCATGTTCCAGGCGGTGCAGCCCGTCCACAAACGGCCCATTCTGCTGGACACTGAAGGGGGACGTAAACTGACACAGCTGGCGGTGGACCGCGTGGAAGCTGAGGACGGACACTACAATGTTCTCTTCATAGGCACTGATAATTCTGTAGtattaaaaatgatcacaatCTACAACAAAGAAGCTGACACAGTTGAAGAAGTTCTTCTGGAGGAACTGCAAGTTTTCAAGGTCCCTGTTCCTATTACAGAGATCCTCATCTCCACCAAACGACAACAGCTGTACGTGGGCTCTGAGCTGGGTGTAACTCAGATCCGTGTTCATCAGTGTGGGCTGTATGGCTCAGCCTGCGCAGACTGCTGCCTGGCCAGAGACCCCTACTGCGCATGGGATGGGTTCACATGTTCCCGGTACTACCCTGCTGGGCTCTATACGAAAAGgCGCTTCAGACGGCAAGACGTCCGCCATGGCAACGCAGTTCAGCAGTGCAATGGGCTTCAGCTTAGCGAAGAACAACACATCTCAGAAAAGCTGGTATTCGGTGTGGAGAACAACAGTACCCTGCTGGAATGCAGACCACGATCACTGCAGGCGTCTGTGACATGGTACATTCAACATGGCGTGGATATGGAGGAGGTGAAAGGTGATGATCGCGTGATTCAAACCCCCCACGGCCTGTTGCTCCTTAAAATAGAGAAGGGAGATGCAGGGGTCTATGTGTGCCAGTCCACGGAGCACGGCTTCGTCCAGACCGTGGTGCATGTCACTTTGGAGGTGTTGGACGAGGGGAAAGTGGAGGGTTTGTTACATAAAGGTGAGGAAGATGAAGGCGATTCTCCGCACAGACCTCCGCCCTGCCCCTTCCCCAGCTTGCCCTCGGCTCCATCCTCCTCAAAGCTCTGGTACAAGGATTTCATGCAGCTGATTGGCTACAACAACTTCCAGCGGGTGGAGCAGTACTGCGAGAAGGTGTGGTGCGTGTCTGACAGGAAAAGGAAGAAACTCAAGGGAATGGCACCCAAATGGCGGTATTCGTCTGGGTCAGAGCAGCGGGCGAGAGCACGGGCACCTCGACACACACAGGGACAGTAAAGACTGATAGAACATCCCAACTCAGTGCAGATGATTACATATAGacagctttattattattattattattaaaaatagaaatgattggTAAAGTCATTAAAGCATTTCTCTTTAGAGTTGCATCATTTGACCTGAAAACCATTAATCTGTATTCAATATGCCAGTTATTTAAAAGTACACAAAGTCATTTTTCCATAGACTTTATAGatgtatgaaataaaaatataacccTTTACATTACGCAATAAACACAGATATACACATTTGCTTTTTTGCTGAAGAgttacactaccattcaaaaatttggggtcagcaaggacacattaaatttattcaaaattgacagaagagactttttttgttgttaaaaatccaattgaaatgaatgctgttcttttaaacttat
>XM_043263922.1
GGCTGGCACGTGGAAGGGCAGTATTTCACAGAgccatagagagagagaggaaagagaggagGCTTCTTCTCATTAGAGGAGGTGGAAGCTCTCCAAGATCAGTGAGCTTGTTGTCTGACACGCTCGCACtcacacatttttatgagtTCGAGGAATGCATCGCCTGTGGTAAGAGTGACAGGAACAGTCAGCCAGGGTTGAGTCACAGCGTTGCGCTCAGTTTAGACACTTTCCTCACGCCGGAATCCACAGAAGCATCTCAAAACACTCCCTACGTGTCAATGAAGTGAGTTTCAGCGCACTGCTCTGATGACGGCAGACTCATTTTCTTCTGCAACCGGCAATTCAGTCATTCGGCGGATGGAGGCTGCCTGTGGTGGATCGTGAGGAGTCAGTGTGAGACGTTCAGAAGAGGAGTGCGTAAAGATGGCATGGGGTGTGTGGACCTTCGTGCTTTGCATGACTCTATGGATCTGCTCTGCAACTCAATCAGCAAAGACTGTGTATCCAAGATTACGTCTGTCTCACAAAGAGTTGTGGGAGCTGAACAGGACGAGAGTGTTTCAGGCCGGAGAGGGGCGTCTGCAGCACTACAGTATGTTACTGGATGAGACTCAGGAAAGGCTAATCATCGGAGGAAAAGACATACTGTACTCTCTCAATCTGGAGCGTATCACTGCCCCTCACAAAGAGaTTCACTGGCCGAGCTCTGAGGAGCAGGTGGGGGATTGTTTAATGCAGGGCAGAGAGAAGCCGGAATGTGCAAACTACATTAAGCTGGTGCAGCATTATAACAGCTCCCACCTCTTAGCATGTGGGACTGGGTCCTTCAGCCCAGTGTGTGCCTATGTCAGAGTGGGCCGTGGAACAGagGAAGGAGAGTTCAGGCTGGAGTCTGATCACATAGAGAGCGGCAGAGGAAGGTGTCCATTCCACCCCAACAGCCCCTCAGCATCCACTATGTACCgtgggGAGTTGTTTGTTGGCTTGTACACTGATTATTGGGAGAACGATGCCGCTCTGTATCGTCTTGGCAACCGCAGTTTCATTAGGACTGAAGTGGGTGACAGACAGCAGCTGAATGAGCCCAAGTTTGTGGGTTCGGCAGTGATCCCTGACAATGATGATCCTGCTGATGATAAGGTCTACTACTTCTTCACGGAACGAGTGGCCAGCATGGATGGAGGAAATAAAGCCGTTTACACCAGAGTGGCCAGAGTCTGTGCGAATGACCAGGGTGGTCAGAGGATGCTGGTAAACAGATGGAGCTCTTTCTTGAAGACTCGTTTGATCTGCTCAGTGGCTGGACCCAACGGCATTGATACACACTTTGATGAGCTCGAGGATGTGTTTGTGCTGCGTaagaaagatgctaaaaatCCAGAGGTCTTCGGTCTGTTTAGCACCACCAGtgCCGTTTTTAAAGGATACGCGGTGTGCATGTATAACATGGAAGACATTCGTGCAGCTTTTAACGGGCCTTTTGCATACCGGGAACGGACTGACCACCACTGGAAGGTGTACGATGGCAGGGTCCCCTATCCACGACCTGGATCGTGCGCCAGTAAGATAAACGGAGGCCAGTTTTCCGGTTCAAAGGAGTATCCGGATGAGGTTCTGCGATTCGTGCGTTCCCATCCCCTCATGTTCCAGGCGGTGCAGCCCGTCCACAAACGGCCCATTCTGCTGGACACTGAAGGGGGACGTAAACTGACACAGCTGGCGGTGGACCGCGTGGAAGCTGAGGACGGACACTACAATGTTCTCTTCATAGGCACTGATAATTCTGTAGtattaaaaatgatcacaatCTACAACAAAGAAGCTGACACAGTTGAAGAAGTTCTTCTGGAGGAACTGCAAGTTTTCAAGGTCCCTGTTCCTATTACAGAGATCCTCATCTCCACCAAACGACAACAGCTGTACGTGGGCTCTGAGCTGGGTGTAACTCAGATCCGTGTTCATCAGTGTGGGCTGTATGGCTCAGCCTGCGCAGACTGCTGCCTGGCCAGAGACCCCTACTGCGCATGGGATGGGTTCACATGTTCCCGGTACTACCCTGCTGGGCTCTATACGAAAAGgCGCTTCAGACGGCAAGACGTCCGCCATGGCAACGCAGTTCAGCAGTGCAATGGGCTTCAGCTTAGCGAAGAACAACACATCTCAGAAAAGCTGGTATTCGGTGTGGAGAACAACAGTACCCTGCTGGAATGCAGACCACGATCACTGCAGGCGTCTGTGACATGGTACATTCAACATGGCGTGGATATGGAGGAGGTGAAAGGTGATGATCGCGTGATTCAAACCCCCCACGGCCTGTTGCTCCTTAAAATAGAGAAGGGAGATGCAGGGGTCTATGTGTGCCAGTCCACGGAGCACGGCTTCGTCCAGACCGTGGTGCATGTCACTTTGGAGGTGTTGGACGAGGGGAAAGTGGAGGGTTTGTTACATAAAGGTGAGGAAGATGAAGGCGATTCTCCGCACAGACCTCCGCCCTGCCCCTTCCCCAGCTTGCCCTCGGCTCCATCCTCCTCAAAGCTCTGGTACAAGGATTTCATGCAGCTGATTGGCTACAACAACTTCCAGCGGGTGGAGCAGTACTGCGAGAAGGTGTGGTGCGTGTCTGACAGGAAAAGGAAGAAACTCAAGGGAATGGCACCCAAATGGCGGTATTCGTCTGGGTCAGAGCAGCGGGCGAGAGCACGGGCACCTCGACACACACAGGGACAGTAAAGACTGATAGAACATCCCAACTCAGTGCAGATGATTACATATAGacagctttattattattattattattaaaaatagaaatgattggTAAAGTCATTAAAGCATTTCTCTTTAGAGTTGCATCATTTGACCTGAAAACCATTAATCTGTATTCAATATGCCAGTTATTTAAAAGTACACAAAGTCATTTTTCCATAGACTTTATAGatgtatgaaataaaaatataacccTTTACATTACGCAATAAACACAGATATACACATTTGCTTTTTTGCTGAAGAgttacactaccattcaaaaatttggggtcagcaaggacacattaaatttattcaaaattgacagaagagactttttttgttgttaaaaatccaattgaaatgaatgctgttcttttaaacttat

Function

symbol description
sema3e Enables neuropilin binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; endoderm; mandibular arch skeleton; and primary motor neurons. Human ortholog(s) of this gene implicated in CHARGE syndrome. Orthologous to human SEMA3E (semaphorin 3E).

NR:

description
semaphorin-3E-like

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263921.1 True 3141 mRNA 0.49 17 21428728 21466593
XM_043263922.1 False 3139 mRNA 0.49 17 21428727 21466593

Neighbor

gene id symbol gene type direction distance location
sema3ab sema3ab,sema3a,LOC107665547,LOC107672583 coding upstream 19886 21378928 ~ 21408841 (+)
sema3d sema3d,LOC107559401,LOC107723940,LOC107672594,LOC107729993 coding upstream 100397 21296098 ~ 21328330 (+)
elapor2a LOC107729994,LOC107671159,LOC107665539,LOC107559856,LOC565175 coding upstream 234758 21176917 ~ 21193969 (+)
tmem243a tmem243a,LOC107560025,LOC107665549,LOC107710379 coding upstream 251935 21174591 ~ 21176792 (+)
si:dkey-5i3.5 LOC107710366,LOC107671161,LOC107559433,LOC107665548,LOC107599782 coding upstream 254406 21167515 ~ 21174321 (+)
pclob LOC107559387,LOC107723935,LOC107672584,LOC107665542,LOC107738431,LOC107563410 coding downstream 10735 21477328 ~ 21546134 (+)
LOC122363109 cacna2d1,LOC107672590,LOC107738419,LOC107673139 coding downstream 83552 21550145 ~ 21638322 (+)
LOC122323126 LOC107738418,LOC107723941,LOC107672595,LOC107563412,LOC100334116,LOC107673134,LOC107559839 coding downstream 189728 21656321 ~ 21681835 (+)
lepa NA coding downstream 453514 21920107 ~ 21922673 (+)
mical3a LOC107673136,LOC108414616,LOC108264267,LOC106573174,LOC106561386 coding downstream 487710 21954303 ~ 22015456 (+)
G128158 NA non-coding upstream 262654 21165272 ~ 21166073 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding upstream 265976 21161886 ~ 21162751 (+)
G128149 NA non-coding upstream 299694 21128553 ~ 21129033 (+)
G128148 NA non-coding upstream 347436 21080769 ~ 21081291 (+)
G127935 NA non-coding upstream 491285 20894777 ~ 20937442 (+)
G128216 NA non-coding downstream 185 21466778 ~ 21468553 (+)
G128251 NA non-coding downstream 171817 21638410 ~ 21641629 (+)
LOC122323089 NA non-coding downstream 227853 21694446 ~ 21835021 (+)
G128318 NA non-coding downstream 567078 22033671 ~ 22068953 (+)
G128329 tspan9a,LOC107559293,LOC107738414,LOC107587031,LOC107672591,LOC107084745,LOC108414266 non-coding downstream 642880 22109473 ~ 22110458 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 787668 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 828208 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 872100 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 879370 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 1335126 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 934351 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 968213 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 1990507 23457100 ~ 23736848 (+)
G128858 NA other downstream 2983172 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 3117252 24583845 ~ 24588337 (+)

Expression


Co-expression Network