CI01000001_03165168_03197970


Basic Information

Item Value
gene id CI01000001_03165168_03197970
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3164964 ~ 3198261 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03165168_03197970.mRNA
ACAGCTTTAGGTTTTAGTTAAAGAACAGAACTGCTGATTAAGTTCACTCTATTTTCAGATGTTTGTAGATGTAATTTTAGTTCTCTCGATCTGGCTGCAGGGTTTGACCCAGATAGGCCACACTGTCGACTCCCAGGTGTGGGCGGCCGAAAACTTCCTGCAACTCTTTCATTCTGTGCTGTGGACCTTTCTGAGGGAAACTGAACTGCTTTCCTAGCTTTTGTGTTTTTGTAAGTGGGTCGGATGGTGCTCTAGTGTACTCCGGTGCTGCAGGCGCTCTGTTCATTAGCAATGGGGTGGTGTCAGAGGGCCCAGATCTTGGTGAACTCCATTACCCAGCCTGCACTGCTGTATGAGAATGTGGAGAATGTTCTGAGAGGCCCGACAGACAAGTTGTGCGGTTTGGTCACGCACCTTTCGAGTCCCCAGAGATACCAAATAGAAAGATCCACAAATGGTGAATTCGTTAGACTGTGTATGTGTGTGAGCATGTGTGAAAAAGAGAGACCCGGAACGTCTCCTGATTGTCTGCATGTGATATTCGACACTGTGTCAGCCCCCTTCCCACTTTTCCACACACACACACAAGCGGCGGCGCCTCTGCGCTGTATTCTGCAGGTACTGGAGTGGGTTTGGATGTACAGGATGAGTGGTCCTCCTCCTATGGAGGAAGGAGTCAATGGGAGAGGTTTTATTATGTTTGAGAAGATGAAATATAAGTTCAGATTTGGCGTTACAGATGTGTCCCGACAGTTGTATGACCGCAGATGTTGCGTCCTAGGATGCTGTTTATCATTGAAATGGTGTTTGGACTCTCAGGGTGACCTTATCACCCTGACTCAGATTAACCATGGACATTTACCCCACAGGGCTTTCATCGGTTTGATGGCGATACATAATTTATGTTTGGTGAGCCGGGTGCCGGTGGAGAGCTGTGAGCAGTACAGCAGCTGTAGCGAGTGTCTGGCTTCTGGTGATCCCCACTGCGGCTGGTGTGTCCTGCACAGTGTATGTTCACGTAAGGACCGCTGTGAGAGAGCTGATGAGCCCCAACGCTTCGCCTCCAGACTGGAGCAGTGCGTCCGACTCACGGTGCAGCCCAGCAATATTTCAGTCACCATGTCTGAAGTTCAGGCAAGTCTGGTTCTTCAGGCTCAGAACGTCCCCAGTCTGGCTGCGGGTGTTAACTGCTCGTTTGAGGACTACACTGAGACGGAGGGACACATCATGGGGGGACGCATCTACTGTCTGTCCCCCTCTGCAAGGGAGATCGCTCCCATCACGCGAAACCAGGGTGACAAGCGGGTGGTGAAGCTCTATCTGAAATCCAAGGAGACGGGGAAGAAGTTTGCCAGCGTGGATTTTGTCTTCTACAACTGCAGTGTCCATCAGTCTACTGGCAGTAAGGAGGATGACATGGCGCTTTTGAGGTGTCTCTCCTGTGTGAATGGCTCCTTTCCATGCCACTGGTGCAAATACCGCCACATGTGCACCCACAATGCCAACGACTGCTCATTCCAGGAGGGCCGCGTCAACATGTCTGAGCTCCCTCAAATACTCTGCAAATTCCCGTCTCCCGTGCCTCTGATCCCAGGCACTGGCTGTGACAGCACTGCACTACAAACAGCCGAGGATGGAGCTCTGAGAAGCCGGTCTCTGGATCAGTATTCCAGCGGCCGTGCCAAGAACGCATGCCTCACCTCGTGTCATTTCAGTTCCTTGAGCGACTCCATATCAAATGCCACCTTCATCCTACCCAACGCCTCATCCTCTCGGGATAACAACGATGAGGGTTCACTGTAATTAATCAATTAATCAGAAAGGCAATTAGCAGAAACGGGGACCCCGCCACGCACCCTCACCTTTGTTGTTTGATGCCGGTCCATCCCGCTGTGTTGCAAGTAGAGCTCAAAGCCCCGCAGTTCCCGTTCTCTCTGGCACTGGGCCTCTCGGAGGGATCTAAGGCTGCCACTGATCTGTGGCTTTAATTATTCAAAGTGTATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03165168_03197970.mRNA True 2007 mRNA 0.51 15 3164964 3198261

Neighbor

gene id symbol gene type direction distance location
CI01000001_03092786_03156426 NA coding downstream 7544 3091548 ~ 3157420 (-)
CI01000001_03083837_03089846 PLXNA1 coding downstream 74246 3083837 ~ 3090718 (-)
CI01000001_02863703_02865768 NA coding downstream 299196 2862762 ~ 2865768 (-)
CI01000001_02679428_02695867 NA coding downstream 467062 2678777 ~ 2697902 (-)
CI01000001_02641721_02653037 ACP1 coding downstream 511927 2641546 ~ 2653037 (-)
CI01000001_03213566_03220085 NA coding upstream 15013 3213274 ~ 3220866 (-)
CI01000001_03248474_03248737 NA coding upstream 49470 3247731 ~ 3248824 (-)
CI01000001_03256512_03264159 NA coding upstream 58251 3256512 ~ 3264605 (-)
CI01000001_03277026_03283028 PLXNA1 coding upstream 77482 3275743 ~ 3283450 (-)
CI01000001_03402460_03453617 CHCHD6A coding upstream 204199 3402460 ~ 3453617 (-)
G14492 NA non-coding downstream 276516 2887824 ~ 2888448 (-)
G14383 NA non-coding downstream 325175 2758067 ~ 2839789 (-)
G14458 NA non-coding downstream 502252 2662288 ~ 2662712 (-)
G14445 NA non-coding downstream 540444 2624307 ~ 2624520 (-)
G14214 NA non-coding downstream 691375 2470195 ~ 2473589 (-)
G15007 NA non-coding upstream 117560 3315821 ~ 3316045 (-)
G15037 NA non-coding upstream 127765 3326026 ~ 3326361 (-)
G15050 NA non-coding upstream 145132 3343393 ~ 3343791 (-)
G15052 NA non-coding upstream 146710 3344971 ~ 3345395 (-)
CI01000001_02258523_02262621 NA other downstream 867752 2258442 ~ 2263103 (-)
G14228 NA other downstream 1108486 2055974 ~ 2056478 (-)
G14219 NA other downstream 1170066 1994210 ~ 1994898 (-)
G14104 NA other downstream 1397506 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 2767831 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 1194053 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 1278023 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 1370821 4725927 ~ 4728210 (-)
G15736 NA other upstream 1602640 4800901 ~ 4801395 (-)
G16332 NA other upstream 1752428 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016957 plxna1,LOC106572368 coding CM030122.1 CM030122.1 37535873 ~ 37569505 (-)