chtf8 (chtf8,LOC107569647,LOC107583916)


Basic Information

Item Value
gene id chtf8
gene name chtf8,LOC107569647,LOC107583916
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25123321 ~ 25124789 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264005.1
AACTTGTGTTTCTGTCAGCGGAAGATCGCGCAAGACAACGGATGAGAGAAGTGAACGTATTTACAAATGTAGTTGGCCTACATTAGTGCAGACAGCCGTGTAGCGAAGATTTGTTTGTAGGCAATGTTAAGCTAATTTTTATCCTTGCCAACGTTTCAGATGAGAAGGTTCACAGAACAGGAAGAAATTGTGTGATTTGCGAATCCTGACAGAAGAAAGATAAAGAAATGGTTCAAATTGTCATCTCGAGTAAAGCTGGTGAAGGTCCAGCTGAATGGCTGCTGGTGGAGTTGCAGGGAGAAATGGTGTCCAGACAGAATACTGGACTTGCAGGAAATCTGATGGGAGACCTGCACTTTACAAAAGAGGGTGTACCGGTGCTTATAGTCGGACATCACATCCTCTATGGCAAACAGGTCAAACTGGAGAAGCCCTTTGCTGTTCTCTTGAAGCACTCTGGACTCCCTCGGAACGAAGAGGAAACAATGGAAACCAACCAAGAAAACCCAACATCTTACACTGTTTCTGCCCTCATCAAAAAGAAGCTCATCTTTAAAACCCGACCGAAACCTATCATCACTAATGTGCCAAAGAAGGTATAACTTATGTTCAGATATCAGAGACTTATCGGCACAGAATTCTAGATTTGTAACCACGTGtgaatataaatgttgttttgaacgGTGGATTACTATCTTTTGTACGTTGTTGTCAGGAGTGAGTAATTGACAATAACGTTGaacaaatacacatattttaagTTATGCAAGTAATAGGCCTAATGTGCGTTCAGAAACCAGAAAATACTCGCTTTTGAATGGAAGTTTATTGTATCAAAACATCAGTTACAAgtgtttgcaaaaataattacatggGGAATGTCCAAATTTAAAGAATCCAGCgtcttttaaatgtacataaatacataaaacataatatgtAAAGATCATGTGAGATTAAAAAGACCATGATGGCCATTTGTAGGTATTGTACATTGTGGAAATACAGGTTAGCTGTGACACACAGACTAAATGGTGGCATTTCATCAACAGTTGATTATTTTACTTTGTGAGTAGATGTAAGCTGCCAGTGGCgatcattaaaacaacagaatttcgGTTAAAAACACTTACCCTCTTCTATTACGGattgtgaataatttattatttcctAGTCTGTACAGTGTTATGAAAATAACTTAACATGTTTTCCATAAAATAAACTTTCCTAGGAAAATG
>XM_043264006.1
GCGGGAAACTTGTGTTTCTGTCAGCGGAAGATCGCGCAAGACAACGGATGAGAGAAGTGAACGTATTTACAAATATGAGAAGGTTCACAGAACAGGAAGAAATTGTGTGATTTGCGAATCCTGACAGAAGAAAGATAAAGAAATGGTTCAAATTGTCATCTCGAGTAAAGCTGGTGAAGGTCCAGCTGAATGGCTGCTGGTGGAGTTGCAGGGAGAAATGGTGTCCAGACAGAATACTGGACTTGCAGGAAATCTGATGGGAGACCTGCACTTTACAAAAGAGGGTGTACCGGTGCTTATAGTCGGACATCACATCCTCTATGGCAAACAGGTCAAACTGGAGAAGCCCTTTGCTGTTCTCTTGAAGCACTCTGGACTCCCTCGGAACGAAGAGGAAACAATGGAAACCAACCAAGAAAACCCAACATCTTACACTGTTTCTGCCCTCATCAAAAAGAAGCTCATCTTTAAAACCCGACCGAAACCTATCATCACTAATGTGCCAAAGAAGGTATAACTTATGTTCAGATATCAGAGACTTATCGGCACAGAATTCTAGATTTGTAACCACGTGtgaatataaatgttgttttgaacgGTGGATTACTATCTTTTGTACGTTGTTGTCAGGAGTGAGTAATTGACAATAACGTTGaacaaatacacatattttaagTTATGCAAGTAATAGGCCTAATGTGCGTTCAGAAACCAGAAAATACTCGCTTTTGAATGGAAGTTTATTGTATCAAAACATCAGTTACAAgtgtttgcaaaaataattacatggGGAATGTCCAAATTTAAAGAATCCAGCgtcttttaaatgtacataaatacataaaacataatatgtAAAGATCATGTGAGATTAAAAAGACCATGATGGCCATTTGTAGGTATTGTACATTGTGGAAATACAGGTTAGCTGTGACACACAGACTAAATGGTGGCATTTCATCAACAGTTGATTATTTTACTTTGTGAGTAGATGTAAGCTGCCAGTGGCgatcattaaaacaacagaatttcgGTTAAAAACACTTACCCTCTTCTATTACGGattgtgaataatttattatttcctAGTCTGTACAGTGTTATGAAAATAACTTAACATGTTTTCCATAAAATAAACTTTCCTAGGAAAATG

Function

symbol description
chtf8 Predicted to act upstream of or within mitotic sister chromatid cohesion. Predicted to be part of Ctf18 RFC-like complex. Orthologous to human CHTF8 (chromosome transmission fidelity factor 8).

NR:

description
chromosome transmission fidelity protein 8 homolog

GO: NA

KEGG:

id description
K11270 CTF8; chromosome transmission fidelity protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264005.1 True 1238 mRNA 0.38 3 25123327 25124789
XM_043264006.1 False 1153 mRNA 0.38 4 25123321 25124789

Neighbor

gene id symbol gene type direction distance location
si:ch211-218c6.8 LOC107709518,LOC107686257 coding upstream 14386 25107115 ~ 25108935 (+)
si:ch211-242e8.1 LOC107751619,LOC107569663,LOC107583802 coding upstream 19570 25099382 ~ 25103751 (+)
c18h11orf16 LOC107740346,LOC107672206,LOC107686328,LOC107750774,LOC107583884 coding upstream 27648 25090195 ~ 25095673 (+)
rnf141 rnf141,LOC107686251,LOC107730548,LOC107672299,LOC107740332 coding upstream 109701 25009287 ~ 25013620 (+)
lyve1b NA coding upstream 114857 25006079 ~ 25008464 (+)
trhr2 trhr2,LOC107686265,LOC107738778,LOC107549620,LOC107740321,LOC107583797,LOC107672195 coding downstream 52143 25176932 ~ 25187744 (+)
LOC122362888 LOC107686267,LOC107738755,LOC107738765 coding downstream 165213 25290002 ~ 25294615 (+)
phaf1 si:dkey-102f14.5,LOC107686270,LOC107738752,LOC107583793,LOC107549632,LOC107740317,LOC107672279 coding downstream 197867 25322656 ~ 25334005 (+)
nup93 nup93,LOC107549634,LOC107740311,LOC107583877 coding downstream 224692 25349481 ~ 25371467 (+)
slc12a3 slc12a3,LOC107740340,LOC107583876 coding downstream 246916 25371705 ~ 25381143 (+)
LOC122362644 NA non-coding upstream 73716 25034118 ~ 25049605 (+)
G129134 NA non-coding upstream 79501 25043088 ~ 25043820 (+)
G129125 NA non-coding upstream 106337 25013750 ~ 25016984 (+)
G129127 NA non-coding upstream 122391 25000730 ~ 25000930 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding upstream 267090 24839062 ~ 24856231 (+)
G129246 NA non-coding downstream 163354 25288143 ~ 25288537 (+)
G129262 NA non-coding downstream 223967 25348756 ~ 25349038 (+)
G129270 fam192a non-coding downstream 315259 25440048 ~ 25442441 (+)
G129360 NA non-coding downstream 537708 25662497 ~ 25663585 (+)
G129368 NA non-coding downstream 550282 25675071 ~ 25675310 (+)
LOC122323037 NA other upstream 534984 24583845 ~ 24588337 (+)
G128858 NA other upstream 665761 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1386473 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2684642 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2711364 22400944 ~ 22411957 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 169954 25294743 ~ 25309740 (+)
mt2 NA other downstream 221603 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 796478 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 827541 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 1104305 26229094 ~ 26332010 (+)

Expression


Co-expression Network