zgc:153031 (zgc:153031,LOC107664682,LOC107583831,LOC107672313,LOC107553959)


Basic Information

Item Value
gene id zgc:153031
gene name zgc:153031,LOC107664682,LOC107583831,LOC107672313,LOC107553959
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24287138 ~ 24291459 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264094.1
TCCCATTGGAAGTCACATGGTGAACCAAGCAGATGTTTTAAAGCTCCATAATCTAACGGGTTGAGGTCGAGAAGGATGCGAACGTCTCATTCTAAACCAACTGGACGACTGTAGCCTAGTTTGTATCATAAACCAGATAAGCTGCTCTTAACGAAAGCCGTAAACTATGAACATCGAGGGGGAGGAGATGCGCAAACCAATCCGGCTCATCGCGGCTGCCTGCAGAGACATGGGCATAGGAAAGAACGGACAGCTTCCCTGGAGTCTTCCAAAAGAATTTCAGTTCTTTCTGGATACAATTACTGCTGTGTCGGTACCTGGAAAGAAGAATCTACTTGTTTGGGGGCGAACCTCCTGGTTTTCCTGCCCTGAAACAGCCTTCCCTTTGGCCAACTGCTTAAATTTGGTATTGAGCAAAAAAATGACTGCAGTGCCTCCACGTGCCCACTATCTGTGTAAGGATTTCGGGTCAGTAATTCACATGGCTTCTAAGCCTCCTTTATGTCAGACTGTGGAGACCATCTGGATTTTAGGAGGTCCAGAGGTATATAAGGAAAGTCTTGAGCACCCATGGTGTGATCTCATCTATCTCACCGACATCATGGCCAACTTTGACTGCAATGTCTTTTTCCCTAAATTCGACcgcaatgttttcaaaaaacaaaacagCTTTCCTGGAGTACCAGATGAAATTCATGAAGAAAATGGtattaaatttcaatttcaagtaTTCAAGAAAGAAGCTTTAAACTGAAGCCAGGAGGAGACAAGACTGTCAAAGAccatactaaaataattttatttttacataatctgAAACTACGGAGCCACTATGGGATGggagaaaatatgtattttttcgCCAATGTCCCCTAGAAAGTTTAAGATTCTTTCCGCATATATTGTgttcatctttaaaatgttaGCAAAAGTCTTAGGTTCCCCAAAAGATATTGCAAACATTGCATTACCTCTGCATTCTTTAACAAAAGTATTGCATTCATCTGAGAATTTTTGCCCTTTCTCGCAAAACGATGcttgaaaatatttagcagtcactcaaaaaacatttgcatttcctCGCAGAAGTATTGCGTTTTCTTGGACATTTTTTGTTCTCCTACAAAAAATTGCGTTCCCCTGAGACATTTTGCATTCTCTTGCAAAAGTATTGCGTTCATTTTGAGGTTTTTTGCAGAAGTATTCTTGGCCCAAAATATTGCATTCCGTATTGCACTCTCTAGCAAAAGTACTGCAGTATTCCTGAGACATTCTGCTTTCTTTCGCACAACATTTTGTTCCCCTGAGAAACTTAGCATTTTTGCAAACTTTACAGCTTTGCGAACTTTACACAGAGCCATTGAGCATTCTGTGCAGGTTTGTGGCATCTTTTGAATACACGTTGCTTACTATGGTAAATCACGTCAAGTTGACCATTACAATATGTGTCATAGACATACATTGGACTGCAGGCACGGAGAcatgttggaacagtgaacctAATGTCAGTCAGCATACTATAGATTCACACAGAGCCGTTGTGTGCAGGATTATGGCTTCTTCTCGTATATTCATTGATTTCTATAGTGAATGAAGTCAGACCGCTACAATATGGCGGACGGCTTATGTATCACAGCTCATAGAAACAGTCTATGTATGCTTATCTATGTTATATATAGCAGCCCATAGGAACGGTCACCATTGAAGCATCAATGTATACATACCTATGACGCAAACATCCttcaatatagaaatcctggtcAGGAAAAAGTCACGTATGGTCACCTTAGCCCAGAGCTGGAAAAGAGAACCAGTACTGTAGGGCAGGGATGCCCAATTCCGTTTCTGAAGATCTACAAAGTTCAGTGCAAAACCTGCTCTAACACACCTGTCTGTAATTATCCAATGTTCTTGGAGATCTTAATTAGCCTGTTCATGTGTGCTTGATTAGGTTTGGAGCTGAGCTTTGCAGGAGGGTAGATCAGGAACAGAAATGGGCACCCCTTGTatgaaacagtattttattggttttaataTAGTTGTGTCAGCTTCGTACGATATTGTACAGAAGAACACTTTATCTCATAGCTTCGGTTGGGCTCTACTGGTGGTACCTCATCACTGTCCAATTCATAAGCATTTCAAAAGAGCTagtcctgctgaaaaaaacaataaaaccctGACCAAAACACACtagaaaatgtaatggattCAATGTTTATAATGGGAAttatattggttttaatggaaactatAATACTTGTATGTGATGGATTCTATTGGCGGGAGGTTAAATCCTATTGGAAAAatgcccaaaacacactacaaaaaatacattttggttttactggaaaaagctgttttaatgtgtaaaaaagTAATGGTTCATAAgggttttttaatgtttttttattgggcttctattgttttagtttttttagcagGGAGTTCATACAAgaccttttttatatattaaataacaaatcaCACCACACATGACCTGGAACAGCAAATGGATACAGACAATGCTGCCAGTGATGAGCATCACTT

Function

symbol description
zgc:153031 Predicted to enable NADP binding activity and dihydrofolate reductase activity. Predicted to be involved in dihydrofolate metabolic process; folic acid metabolic process; and tetrahydrofolate biosynthetic process. Predicted to act upstream of or within glycine biosynthetic process. Predicted to be active in mitochondrion.

NR:

description
dihydrofolate reductase-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0006545 glycine biosynthetic process biological_process
GO:0050661 NADP binding molecular_function
GO:0004146 dihydrofolate reductase activity molecular_function

KEGG:

id description
K00287 DHFR, folA; dihydrofolate reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264094.1 True 2550 mRNA 0.39 6 24287138 24291459

Neighbor

gene id symbol gene type direction distance location
cry1b cry1ab,LOC107672239,LOC107553944,LOC107583830 coding upstream 363 24277282 ~ 24286775 (+)
LOC122362775 cdh13,LOC107722459,LOC107684661,LOC107738387 coding upstream 105596 24134413 ~ 24181542 (+)
uri1 uri1,LOC107553985,LOC107684674,LOC107670159,LOC107583840 coding upstream 317079 23963028 ~ 23970059 (+)
spata2l LOC107670151,LOC107748780 coding upstream 326115 23958161 ~ 23961023 (+)
vps9d1 vps9d1,LOC107749294,LOC107553982,LOC107670156,LOC107748773 coding upstream 334927 23937000 ~ 23952211 (+)
si:ch73-62b13.1 si:ch73-62b13.1,LOC107749314,LOC107740436,LOC107672215,LOC107553958,LOC107583921,LOC107664683,LOC108425440 coding downstream 16717 24308176 ~ 24314980 (+)
si:dkey-103i16.6 si:dkey-103i16.6,LOC107749280,LOC107664689,LOC107553976,LOC107672161 coding downstream 47432 24338891 ~ 24350157 (+)
slc17a8 slc17a8,LOC107553956,LOC107672209,LOC107686235,LOC107583818 coding downstream 169457 24460916 ~ 24472951 (+)
nr1h4 nr1h4,LOC107749275,LOC107686236,LOC107672305,LOC107740216 coding downstream 182778 24474237 ~ 24488921 (+)
LOC122322915 LOC107553937,LOC107749305,LOC107686321,LOC107686322,LOC107553936 coding downstream 202474 24493933 ~ 24502864 (+)
G128772 NA non-coding upstream 221035 24058353 ~ 24066103 (+)
G128770 NA non-coding upstream 223867 24056720 ~ 24063271 (+)
G128753 NA non-coding upstream 257321 24028489 ~ 24029817 (+)
G128725 NA non-coding upstream 499975 23785024 ~ 23787163 (+)
G128699 NA non-coding upstream 927581 23358451 ~ 23359557 (+)
G128803 NA non-coding downstream 5650 24297109 ~ 24297333 (+)
G128804 NA non-coding downstream 6150 24297609 ~ 24297845 (+)
G128816 NA non-coding downstream 53741 24345200 ~ 24382712 (+)
G128854 NA non-coding downstream 139709 24431168 ~ 24431809 (+)
LOC122363046 NA non-coding downstream 142132 24433591 ~ 24446100 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 550290 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 1848459 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 1875181 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3646079 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 3686619 20589684 ~ 20600519 (+)
G128858 NA other downstream 158306 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 292386 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 1003284 25294743 ~ 25309740 (+)
mt2 NA other downstream 1054933 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1629808 25921267 ~ 26174156 (+)

Expression


Co-expression Network