CI01000001_03277026_03283028 (PLXNA1)


Basic Information

Item Value
gene id CI01000001_03277026_03283028
gene name PLXNA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3275743 ~ 3283450 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03277026_03283028.mRNA
AGTGTGGAGTTTGTGGAGTGCACTGCTGTCTGCAAGCTTGACACACTCATTAAATGTTGTATAGGATTCCACCCAGGGCCCCACTGTAAGATATTTATGTTTATGTATTATGGGTTCTTTTCCTCTTGGGCAGGCAGAACTTTTAAACTCTAGTCAAATCAATAGACAATGTTCTATTCTGTTTTTCTCCAGCACTCATGATGTGTTTTTCTACCCTTGCAGGGCTAGCGGCCATGGCGCTGCAGATGATGGTGTAGACGACAGCTCCGTGCCGAGAGAGAGAGAGCAGAGAGGACACTGGGTCAATAAGTTGCTCTCCTCACCGTAGACTGACAGACGCTGTCCAGGTTTTTTCCGGGCCCAGGATCAGAAAGGTGAACGGATCACCTGCCCTACCGCTTCCTCTCAGAAAGATATTAAAAATGCTGCCGTATGGGAGGAGGCCCCTTCCCGCCTCTGTTTGTGAGGCTTTCCTCCTCCTTTTCTTCCTCTCGTTCCTCCCTCAACATGGGGGGCTCGAGGTTAACCTCTCTTCCTTCCGAACCTTCACCCCACCAGAGGGAGGGCTTACGCATTTGGTCGTCCATAACAAAACGGGTGAAGTCTACGTCGGTGCTGTCAATTGGATCTACAAGCTCTCCAGCAACCTGACCAAGCTCCGAAGCCATGTTACCGGCCCTGTGGTGGATAATGAGAAATGTTACCCACCACCTGGGGTTCAGTCTTGCCCTCACGAGCTATCACAGACTAACAATGTCAACAAGCTGTTGCTTCTGGATTCAGGGCAGAACAGGCTCATTGCATGTGGAAGCACCTCGCAGGGTATATGTCAGTTCCTCAGACTGGATGACCTCTTCAAACTGGGTGAGCCGCATCACCGCAAGGAGCACTACCTTTCCAGTGTGTCCGAGGCTGGCACTATGTCAGGAGTGGTTATTAGTGGAACCCAAGGTGAAGACAGTGGTAAATTGTTTGTAGGTACACCCATCGAAGGAAAATCAGAGTACTTCCCGACTCTCTCCAGTCGTAAGCTGATGGCTAATGAGGAGAATGCTGATATGTTCAGCTTTGTCTACCAGGATGAGTTTGTCTCCTCACAGCTCAAGATTCCATCCGACACCCTTTCCAAGTTCCCTACCTTTGATATCTATTACGTCTATGGCTTCAGCAGTGAGCAGTTCATCTACTACCTAACTCTCCAACTGGACACCCAACTCACCTCGCCGGATGCCAGCGGTGAACAATTCTTCACCTCCAAGATTGTCCGCCTCTGTGTGGAAGACCCCAAGTTCTACTCCTACGTGGAGTTTCCTATTGGCTGTACCAAGGATGGTGTGGAATACCGATTGGTTCAAGACGCCTACCTCAGTCGGCCTGGTGCCAGGCTGGCACGATCGTTGGGTATTTCTGAACAGGAAGAGGTGCTGTTTATTGTTTTTGCTCAGGGCCAAAAGAACCGGGCAAAGCCACCGAAAGAATCTGCTCTGTGCCTGTTCACACTGCGTAAAATCAAGGAAAAGATTAAGGAGAGGATCCAATCCTGCTACCGGGGTGAAGGTAAACTGTCCCTGCCCTGGCTCCTCAACAAGGAACTGAACTGCATCAACTCAGATGTAGAGATTATTCTGCTGGATTGCATCTTTTCGTCTATCTCCATGCGACTTGCGTGGCAGACTCTCCCCTCTATATTTCGATTTTATGGTGGCTGTAACAACCGAGGAACTTTTAAAAGTTCCAGGGTATTGATCAGAGATGACTGGATATTGAAAAATCATATAGATGAAACTATATCCACCTCAGTAACCTCGGGGCTAATCGTTTTTCCATAGTTTTATTTATTGTGCTTTGGAACATAGGTTTGAGATTTAAGGGAATCCTTTGTCAATTTTTCTTTCTTAAAGGGGAAACAATGAAGGAAAATGTATGTAAATATCTATTCATTCCGACTGGGTGCACCAATATCATTTTCAGAGACCAAGAATGAGTACTGATACTTTCTATTTGGTATTAGCTAGGGCTGCCCCTTAGTAGTCGACTAACAGTTAGTCAACGAGAAGAGGCTTAGTCGACCAAAATTGGCATTAGTCGGTTAGTCGCTGGAAAAAAAAAAAAACATCCACAGGAAGTGCCGAAATCACGTAGTCTGTGACGGACAGATCGTTAACGGCAGGAAATCCAAACATTCGCCTATCATTCATCAACCTCAAACATGGCTTATCACTTGAAACTTGCAACTTTACAAGTTTGCTCGCTCTAACGTTAACCTAGAAATGTGCGCTATTATTTGGCACATATCCAAGTGTTTGTGTGGAGTTTGTGTGAGCTTACTGCATGACATGGAGGTGCCGCTGCGATCACTTGAAAGGGTTAGTTCACCCAAAAATTAAAATTCTGTCATTAATTACACACCCTCATGTCATTCCATACCCCTAAGACTTTCGTTCATTTTCGGAAATTAAGATATTTTTGATGAAATCCGATGGCTTAGCAAGAAAATTAACACTTTCAATACCCAGAAAGCTACTACAGACATATTTAAAACAGTTCATGCGAGTACGGTGGTTCAATGCAGGCCTCACTGAGCCATCGGATTTCATCAAAAATATCTTAATTTGGTCATACAGATAAGAATAATCTAACATTCGTATTGCTCAACATTGCGCTGCTGCAAGCTTTATGCGTCCGTTTGAGTGCTAAATTAGGCTATGTATTATAAAAAGGAGATTAAAGGCTCATTATTATGAGTTATATGGTTTATTAAATGTGCGATTAGCTGACTAATTGCTTAAATGAACGACTGCTAATCGACTAGAAAAATCTTTAGTCGAGGGCAGTCCTAGTATTTGCTAATACGTTACCTAGGCCTAAGGTTTTACCTTTTTAAAACCTTTTTTTTAATATATATACAGTAGTGTGGATAACCAAGCAGAAAGATGTGGAACCGAGACTGGGTTATACAAGAACATGATCTCTGTATCCGATAGTAGTATCGTATCACTGCATCCCTGTGTGGATTTTAGCATTGTGAATGCATAATTTGCATTTCCTGCTTCTTTGTAACCTTAACATAAGCTATTCAGATCAAACGAGGCCTTATGAGTGGCCAAATAAA

Function

symbol description
plxna1 Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including generation of neurons; regulation of GTPase activity; and regulation of cell shape. Predicted to act upstream of or within dichotomous subdivision of terminal units involved in salivary gland branching; neuron projection morphogenesis; and regulation of smooth muscle cell migration. Located in cytosol and nucleoplasm.

GO: NA

KEGG:

id description
K06820 PLXNA; plexin A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03277026_03283028.mRNA True 3112 mRNA 0.44 3 3275743 3283450

Neighbor

gene id symbol gene type direction distance location
CI01000001_03256512_03264159 NA coding downstream 11138 3256512 ~ 3264605 (-)
CI01000001_03248474_03248737 NA coding downstream 26919 3247731 ~ 3248824 (-)
CI01000001_03213566_03220085 NA coding downstream 55538 3213274 ~ 3220866 (-)
CI01000001_03165168_03197970 NA coding downstream 77482 3164964 ~ 3198261 (-)
CI01000001_03092786_03156426 NA coding downstream 118323 3091548 ~ 3157420 (-)
CI01000001_03402460_03453617 CHCHD6A coding upstream 119010 3402460 ~ 3453617 (-)
CI01000001_03455306_03461493 SARS coding upstream 171157 3454607 ~ 3461902 (-)
CI01000001_03465138_03473769 NA coding upstream 181283 3464733 ~ 3473769 (-)
CI01000001_03474495_03481164 NA coding upstream 191045 3474495 ~ 3481433 (-)
CI01000001_03489900_03496853 PROSC coding upstream 205436 3488886 ~ 3496853 (-)
G14492 NA non-coding downstream 387295 2887824 ~ 2888448 (-)
G14383 NA non-coding downstream 435954 2758067 ~ 2839789 (-)
G14458 NA non-coding downstream 613031 2662288 ~ 2662712 (-)
G14445 NA non-coding downstream 651223 2624307 ~ 2624520 (-)
G15007 NA non-coding upstream 32371 3315821 ~ 3316045 (-)
G15037 NA non-coding upstream 42576 3326026 ~ 3326361 (-)
G15050 NA non-coding upstream 59943 3343393 ~ 3343791 (-)
G15052 NA non-coding upstream 61521 3344971 ~ 3345395 (-)
G15064 NA non-coding upstream 81584 3365034 ~ 3365233 (-)
CI01000001_02258523_02262621 NA other downstream 978531 2258442 ~ 2263103 (-)
G14228 NA other downstream 1219265 2055974 ~ 2056478 (-)
G14219 NA other downstream 1280845 1994210 ~ 1994898 (-)
G14104 NA other downstream 1508285 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 2878610 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 1108864 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 1192834 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 1285632 4725927 ~ 4728210 (-)
G15736 NA other upstream 1517451 4800901 ~ 4801395 (-)
G16332 NA other upstream 1667239 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021836 plxna1a coding NC_007134.7 CM002907.2 34321237 ~ 34753811 (+)
bowfin (Amia calva) AMCG00016956 plxna1,LOC104944641 coding CM030122.1 CM030122.1 37687015 ~ 37688235 (-)