CI01000001_03402460_03453617 (CHCHD6A)


Basic Information

Item Value
gene id CI01000001_03402460_03453617
gene name CHCHD6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3402460 ~ 3453617 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03402460_03453617.mRNA
GTCCATTAAAGAAACTGTGCAAAAAGCGATGGGATCCGGAGAAAGCACGACCAGGAGAGTTTCTTTCGGCCTAGATGAGGATGACAGGGTGAGGATTCTGCGTGGAGTGAAGCTGTCTGAAGACGTCCTACAGCGCATGAGGAATGCCAGTGCTGATCCAAGTCCACCTGTCAACAATAAAGAAAACCTAGGTCAGCAGGCTCGAACGTCCAGCACATCTGACCCACAACCTCCAAAAACACAAGCCAGGGCGACTTTTCCTGATACTAAAGAGGAGCTCAGGAAGAGGTATGAGCAGCAGCAGGCCATTATACAGGAAGAGTTGGCTCGCATCGCACGCAAAGAGAGAGAGGCAGCGCGGCAGGACATCACTCGAGCGGTGCAGAGAGAGCGAGTACAGACACGGCAGGAGTCTGAGAAAGTCAAACAGCTGCCGCATGCAGTGGCTCTGTGTGATGTAGATGTAATGGGAAGTCTTATCATTAATCAGAATGAAGCTGTGACATGGCGACTCCTCTCTGTTCTGCTGGTGCGTTTCAGAGAATGCAACATCAAGCCTGCCTCTGAACTGGATGCCTGGGGGAAACAGCTGGAGAAGAAGGAGGCGGAGCTGAAGGCGCTGGATGCTTTCTACAAAGAACAGATCACAAATCTAGAGAAGAAGAATGAGGAACGCTTCAGGATGTCTGCTGAACAGTTTCACACTGCTGCAACCAGAAGTGAAGCCAATATAAAAGGAAAGGCCCTCATTAGAGGAGCTCTTGGCTGGAAGGGTGAGATTGGACGGGAGGGTGGAGGGATGCGGTCTAGGAGGAGAGGGGAGGAAGCCCGTGTTCAGTCAATTGAAAAGCTGTCAGAGTGCGAGCGAGCCCCTGGAAGGAGAGTCGACAAGATAAGACGAGGTTCTCATCTGCCAGCTGAGCTCGAGCGAGTTCAGCCCGGGTTTGAGCAAGCCAATTTTCTGCTTCAGACTGCTTTAATAAACCCTCTGCTCTATCAGAAGCCTCTGCAGTTCCTGATGAAGGCAGTTTATTTTAAATTAAAGGAGAGTTTCTTATCTGCCGGAGCAAAGAATGTGACTACAGTAGTCGTTCTTCCTTTTGCAGGGGTCTACTGTACAGATGTACCGAGGAGTTTGTCGGGTCTGTTCACCGCCTCCACCTCCTTCCCGCTCGCTGGGTTATTTATCATAGTTGTTCTAGTCACTGCCACTCTTGACACTGGTGTTATTAATGAATATCCACTCTGCCGGCCACGTAATGTGGAGCCAGTGTGTTCGACCCTGCAAGCTCAGATCCTGAACTGCTATAGAGAGAACCGCGAGCAGACACTTCAGTGTTCAGACCTGGCCAAAGAGTACATGCAGTGCATCAATGCAGCTAAGAAGTCGCAAGGAAGAGAGCGTGTGTGGATGTGTTTCGGGCTCACAAGTACACACTGCACTCAGGGAGTGTGTGATAATCACTGCTATGGCAACGGCTCCCAGTACCAGGATGTGGATCTGGCATGCCGCCGCATGCTGCTGCCG

Function

symbol description
chchd6a Predicted to be involved in cellular response to DNA damage stimulus and cristae formation. Predicted to be located in mitochondrial inner membrane. Predicted to be part of MICOS complex. Orthologous to human CHCHD6 (coiled-coil-helix-coiled-coil-helix domain containing 6).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17564 CHCHD6; MICOS complex subunit MIC25

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03402460_03453617.mRNA True 1528 mRNA 0.51 14 3402460 3453617

Neighbor

gene id symbol gene type direction distance location
CI01000001_03277026_03283028 PLXNA1 coding downstream 119010 3275743 ~ 3283450 (-)
CI01000001_03256512_03264159 NA coding downstream 137855 3256512 ~ 3264605 (-)
CI01000001_03248474_03248737 NA coding downstream 153636 3247731 ~ 3248824 (-)
CI01000001_03213566_03220085 NA coding downstream 182255 3213274 ~ 3220866 (-)
CI01000001_03165168_03197970 NA coding downstream 204199 3164964 ~ 3198261 (-)
CI01000001_03455306_03461493 SARS coding upstream 990 3454607 ~ 3461902 (-)
CI01000001_03465138_03473769 NA coding upstream 11116 3464733 ~ 3473769 (-)
CI01000001_03474495_03481164 NA coding upstream 20878 3474495 ~ 3481433 (-)
CI01000001_03489900_03496853 PROSC coding upstream 35269 3488886 ~ 3496853 (-)
CI01000001_03497808_03500098 RUXG, SNRPGP15, SNRPG.S, SNRPG coding upstream 44051 3497483 ~ 3500208 (-)
G15065 NA non-coding downstream 36615 3365437 ~ 3365845 (-)
G15064 NA non-coding downstream 37227 3365034 ~ 3365233 (-)
G15052 NA non-coding downstream 57065 3344971 ~ 3345395 (-)
G15050 NA non-coding downstream 58669 3343393 ~ 3343791 (-)
G15037 NA non-coding downstream 76099 3326026 ~ 3326361 (-)
G15030 NA non-coding upstream 32225 3485842 ~ 3487407 (-)
G15113 NA non-coding upstream 239975 3693592 ~ 3702229 (-)
G15099 NA non-coding upstream 282169 3735786 ~ 3738369 (-)
G15097 NA non-coding upstream 350717 3804334 ~ 3835923 (-)
CI01000001_02258523_02262621 NA other downstream 1105248 2258442 ~ 2263103 (-)
G14228 NA other downstream 1345982 2055974 ~ 2056478 (-)
G14219 NA other downstream 1407562 1994210 ~ 1994898 (-)
G14104 NA other downstream 1635002 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 3005327 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 938697 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 1022667 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 1115465 4725927 ~ 4728210 (-)
G15736 NA other upstream 1347284 4800901 ~ 4801395 (-)
G16332 NA other upstream 1497072 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location