CI01000001_03455306_03461493 (SARS)


Basic Information

Item Value
gene id CI01000001_03455306_03461493
gene name SARS
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3454607 ~ 3461902 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03455306_03461493.mRNA
AGCCGAATTCACAAACAGACCTTATCCTCACAGCAGCGCCAGCCATGTTTGATTTTTAATATACATCATAAATCTCTTCAGTGTGTTGTAGTGTTATTTAATGTGTTTTTTGATTGTTCTGCTGACGAAACGCTGCAAAAATATCTTTCCAAGAAATTTCAGTAGAAAAAACCCCCCGACAATATGACCTGTGGAAATTATAGCGTTATACAGCCTCGCTTTCATTCCTGTCATTGCGCTGCTCTGAATAAGGTCTATACCACTATGGTGAAAGCTTGGCTCATGAATATTAATTAGCTTAGGCGTGACTGCTCCAGGAAGGTTACCAAGCAACGTCGATTTAAAATAATTAATATTAATTAGCTCAGCTTTCGACTAGTATGATTCTGTACATCTCCCCAGAAGTGTAATGAATATGCATAAGCAGCTGCTCTCTAGCGCCACCCCTCCATATTCCTCCACTCTTTCCATTTTCCTTTCCTTCCTTCATTCATCCGCACTGCACACCGCGTCCACAGGCAATATGGTGCTCGATTTAGACCTGTTTCGCACCGACAAAGGCGGCGATCCTGAAATCGTGCGGGAAACCCAGAGGAAACGATTCAAGGATGTGTCTTTGGTGGACAAACTGGTCCAGGCGGATACAGAATGGAGGAAATGTCGCTTCACCGCGGATAACCTAAACAAGGCCAAGAATCTGTGCAGCAAAGCCATTGGTGAAAAGATGAAGAAGAAAGAGCCAGTTGGTGATGATGACACTCTTCCAGAAGAGGTTCAGAATCTGGAAGCCCTCACTGGAGAAACATTATCACCCCTCACGGTGACTCAGATTAAGAAGGTGCGGTTACTGGTGGACGAGGCTGTGCAGAAGACAGACAGTGATCGTCTAAAGCTGGAGGCGGAGCGCTTTGAGTACCTGAGAGAGATCGGCAACCTCCTTCATCCCTCTGTGCCCATCAGCAACGATGAGGATGTTGATAATAAGGTTGAACGCACCTGGGGTGACTGCACAGTGCAGAAGAAGTACTCTCACGTGGACCTGGTTGTCATGGTGGATGGATACGAAGGGGAAAAAGGAGCCATCGTGGCTGGAAGCAGAGGATACTTCCTAAAGGGGCCTTTAGTTTTCTTGGAGCAGGCTTTAATTAACTACGCACTGCGGATCCTGTACAGCAAGAACTACAACCTGCTGTACACACCCTTCTTCATGAGGAAAGAGGTCATGCAGGAGGTTGCCCAGCTCAGCCAGTTTGATGAGGAGCTTTATAAGGTGATCGGAAAGGGGAGCGAGAAGTCTGACGACAATACAGTAGACGAAAAGTATTTGATTGCAACATCGGAGCAGCCAATCGCTGCTTTCCTGAGAGATGAGTGGCTGAAGCCAGAGGATCTCCCCATCCGCTATGCCGGCATGTCCACCTGCTTCAGACAGGAAGTGGGGTCTCACGGCAGAGACACACGCGGGATCTTCAGAGTCCATCAGTTTGAGAAGATCGAGCAGTTTGTGTACGCCTCTCCTCATGACGGCAAGTCCTGGGAGATGTTTGATGAGATGATTGGAACTGCTGAAGAATTTTATCAGTCGTTAGGAATCCCCTACCGCATCGTCAACATTGTGTCAGGTGCTTTGAACCACGCAGCTAGTAAAAAGCTGGATTTAGAGGCTTGGTTCCCAGGCTCCCAGGCTTTTAGAGAGCTTGTGTCATGTTCAAACTGCACAGATTACCAGGCTCGTCGCTTGCGTATTCGCTACGGACAGACTAAGAAAATGATGGACAAGGCTGAGTTTGTGCACATGCTAAATGCCACCATGTGTGCGACTACTCGTGTTATCTGTGCAATCCTGGAGAACTTCCAGACAGAGGAAGGCATTATTATTCCAGAACCTCTCAAGGCATTCATGCCTCCAGGTTTAACAGAAATGATCAAGTTTGTGAAGCCAGCCCCTATTGACCTGGAGGCAACCAAGAAGCAGAAGAAACAGCAGGAAGGCGGGAAGAAGAAGAAACAGGGCGGTGACGCTGATATAGAGAATAAAGTAGAGAACATGTCTGTCAATGACTCTTAGACACACCCCCCTGCAATCCCAGCCAATCATAATGGTTCACAAGCCTTCCATTTTCTGTACTCCATTCACAATCATTGTCCACTGAAGCTGTTGCACTGTTTCATCCCTGATATGTCCCTGCCTCAGTTTACTTTCTCTGGGACAGTCCTACTGTGGAGCTCTCTAACAGTGTGACGGTGTATTTTAAGTCATTCTCAAATCAATTTCCTACAAAGGTGTCTTTGAAATCTTTAATTAAATGCATGGTGTTGCGACAGACATTTAGCCATTAGACCGAAATGCCTTGATGGCACTGTAATTTCCTGGGGCACTGTATTATAATTCTGTGGTTGAATTAAAGGGAACATGCATGGTCAATATCAGTTAGTGCTGGGATAATTCTGCATCAGTGCCATGTTGGAGGTGGGAGTTTTGGGACATTCTCAAGGGAAATTGGTTCTGGATAAAGGACAGACCTCTTTCAATATCCTCTCTTACAATTAATATTTGCGCTATATATTTAAAGTTAAAGAAATTATTAATAACTTACCGTTCACATTCACACAAATGTTACAGTGAGCAGCTTTCTGTCATTCACGTACGTCTTTTGCTTCATAGCAACATTTCTTCTTGTGATTTGTCTGTAAAACAGGGAATGTTATTATATGTACAGTACTTAAGATGCCTTGTGTGAGGAGTATGATGGCATTTGAGAATAAA

Function

symbol description
sars Predicted to enable several functions, including nucleic acid binding activity; protein homodimerization activity; and serine-tRNA ligase activity. Predicted to be involved in negative regulation of angiogenesis; negative regulation of macromolecule metabolic process; and seryl-tRNA aminoacylation. Predicted to act upstream of or within translation. Located in mitochondrion. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; egg cylinder; and genitourinary system. Human ortholog(s) of this gene implicated in intellectual disability. Orthologous to human SARS1 (seryl-tRNA synthetase 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01875 SARS, serS; seryl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03455306_03461493.mRNA True 2767 mRNA 0.45 11 3454607 3461902

Neighbor

gene id symbol gene type direction distance location
CI01000001_03402460_03453617 CHCHD6A coding downstream 990 3402460 ~ 3453617 (-)
CI01000001_03277026_03283028 PLXNA1 coding downstream 171157 3275743 ~ 3283450 (-)
CI01000001_03256512_03264159 NA coding downstream 190002 3256512 ~ 3264605 (-)
CI01000001_03248474_03248737 NA coding downstream 205783 3247731 ~ 3248824 (-)
CI01000001_03213566_03220085 NA coding downstream 234402 3213274 ~ 3220866 (-)
CI01000001_03465138_03473769 NA coding upstream 2831 3464733 ~ 3473769 (-)
CI01000001_03474495_03481164 NA coding upstream 12593 3474495 ~ 3481433 (-)
CI01000001_03489900_03496853 PROSC coding upstream 26984 3488886 ~ 3496853 (-)
CI01000001_03497808_03500098 RUXG, SNRPGP15, SNRPG.S, SNRPG coding upstream 35766 3497483 ~ 3500208 (-)
CI01000001_03502743_03504170 NA coding upstream 40785 3502687 ~ 3504170 (-)
G15065 NA non-coding downstream 88762 3365437 ~ 3365845 (-)
G15064 NA non-coding downstream 89374 3365034 ~ 3365233 (-)
G15052 NA non-coding downstream 109212 3344971 ~ 3345395 (-)
G15050 NA non-coding downstream 110816 3343393 ~ 3343791 (-)
G15037 NA non-coding downstream 128246 3326026 ~ 3326361 (-)
G15030 NA non-coding upstream 23940 3485842 ~ 3487407 (-)
G15113 NA non-coding upstream 231690 3693592 ~ 3702229 (-)
G15099 NA non-coding upstream 273884 3735786 ~ 3738369 (-)
G15097 NA non-coding upstream 342432 3804334 ~ 3835923 (-)
CI01000001_02258523_02262621 NA other downstream 1157395 2258442 ~ 2263103 (-)
G14228 NA other downstream 1398129 2055974 ~ 2056478 (-)
G14219 NA other downstream 1459709 1994210 ~ 1994898 (-)
G14104 NA other downstream 1687149 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 3057474 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 930412 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 1014382 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 1107180 4725927 ~ 4728210 (-)
G15736 NA other upstream 1338999 4800901 ~ 4801395 (-)
G16332 NA other upstream 1488787 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location