tat (tat,LOC107666226,LOC107559814,LOC107587016,LOC107684657)


Basic Information

Item Value
gene id tat
gene name tat,LOC107666226,LOC107559814,LOC107587016,LOC107684657
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23250875 ~ 23258449 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264185.1
ACCAATGAAAATATGGGCAAGGTTCAACACCCATTTTGGGGGGTTCTGTATAAAGCCGGTCTATGAACCGACTTAATCATTCTATGCACATATTTACCTATTTATCTCATCCCCAGCCACTGGAGCGTGATTTGTTATAATAACAAACTTAATAAgACATCATCTTGTTCAGGAGCGCATAGATcaagaaaatgtcttttgtaGTGAAAATGAACGGAGCTCAGAACAATGGCATCAACGGAAACTTTATGAACGGGAACGGCGTGCATCATGTGAGTGTGCGGACTCATGTGAGCGTGAACCCTGCCAAACTGAAGAGTCTCAGGCAGAGATGGAGCGTCAGACCATCAGAGATGTCCAAAAAAACACTCAACCCCATCCGAGCCATAGTGGACGGGATGAAACTCACTCCCAACCCCGAGAAACCCATGATTGCTCTGTCCATTGGTGACCCAACTGTGTTTGGGAACTTGCCAACAGATGACACTGTGTTACAGGCAATGAAGGAGGCCATAGACTCACACAAATACAATGGCTATGCTCCCTCAGTAGgTTACCAAAAGAGCAGAGAAGCTGTTGCAAACTTCTACAGCTGTCCGGAAGCCCCACTGGAAGGCAAAGATGTGATCTTGACCAGTGGCTGCAGCCAGGCTATAGAGCTGGCCATCAGCGTGTTGTGTAACCCGGGGGACAATATCTTAGTTCCACGTCCTGGATTCTCTCTCTATAAGACGCTGGCAGTGTCTATGGGCATCCAAGTCAAGCACTACAATCTGCtgCCGGAGAAGTCCTGGGAGATTGATCTTCAGCACCTGGAGAGTCTGATCGATGACAAAACAGCCTGTCTGATTGTCAACAACCCATCCAATCCATGCGGCTCTGTGTTCACCAGAGAACACCAGCATAAGATTCTTTCCGTGGCATCGAGAAACTGCATCCCTATCCTTGCTGATGAGATCTACGGTGACATGGTATTCCCGGGCTGTGATTTTCAGCCTTTGGCACCTCTCAGCAGTGACGTGCCCATTCTGTCCTGTGGTGGTCTTGCCAAGCGCTGGTTGGTTCCCGGCTGGAGGATGGGCTGGATCCTCATCCATGATCGTAATGACATATTTGGAGCCGGAATTCGAGAGGGACTTGTGAAACTCAGCCAGCGTATTTTGGGACCCTGTACTGTAGTTCAGGGAGCATTAGAGAGCATTTTGAATGAGACGCCACCGGAGTTCTACCAAGGCACCATCAGTTTCCTTAAGTCCAACTCAGAGATATGTTACTCAGAGTTATCAACTGTCCCTGGGCTGAATCCAGTGATGCCATCAGGAGCCATGTACATTATGGTGGGGATCGAGATGGAACACTTCCCAGATTTCCAGAATGATGTGGAGTTCACTGAACGGCTGGTCACTGAGCAGTCTGTGTTCTGTTTGCCCGCTACGGCATTTGAATATCCAGACTTCTTCCGAATTGTGGTAACCGTCCCAGAGGAAATGATGATTGAGGCATGCATTCGGATCAGAGAATTTTGTGCACGTCACTATCGGCCTCGGAGCCAAGACAGCCACGAATTGGACCAGTgaaagaaacagacagagaacagaaggtcaaaaaaggaaaggaaaggtcAAAGGGTGAAGCAAAATGGTGTATGAAGCTGAAGAATAAAACGAAGAGAGGACATCATCCCTTTTTGGAAACCCAGTTTAAtgcaaacattatatttatatttttatatgtattatggCTAGTATTATATAGGGAAGGGTGGGAGGGTAGTTTGAGGGTTATTGAATGAATATAcaattttgcattattgtaaaatattatatgaagtattttttttttcttacactgtAACAGACATCGTGGCAAGTTTGGGAAGTCTTGGGACCAAACCATAAAGCCATTTCATGTGTATCCTGCATGATGTGAAGTATTTATCCATTATGTGACATTTTAGGAatagaatattttgtaatttgcatGCCGAACCATTTTGAGAGTTGAAAATGACATATATGGCACATATATGAcatctaaagttttttttttttattattattattttgcttttaatcgTTACACCTcagaaactatttaaataaaattgtatctcAATATGTCTTTAAGCACcaatgtgtattattattattattagaaacaaTTTTACAGAAAGGGGAGGAGGAAAGTGTAGGTGGATTTCatttcccccccaaaaaaagagaggaaaaggaCTTCTTTTTACTAGTGTTACTCTTTTACtttcttaatatataaaaaactgacACAGTAGCaacaaagcaacaacaaaaaacctgCATGACTGGCAAAGAATAAATGTTTCTGCTCTTGA

Function

symbol description
tat Predicted to enable L-tyrosine:2-oxoglutarate aminotransferase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within L-phenylalanine catabolic process; biosynthetic process; and tyrosine catabolic process. Is expressed in liver. Human ortholog(s) of this gene implicated in tyrosinemia and tyrosinemia type II. Orthologous to human TAT (tyrosine aminotransferase).

NR:

description
uncharacterized protein LOC110518121 isoform X1

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004838 L-tyrosine molecular_function

KEGG:

id description
K00815 TAT; tyrosine aminotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264185.1 True 2350 mRNA 0.43 12 23250875 23258449

Neighbor

gene id symbol gene type direction distance location
LOC122362508 LOC107559815,LOC107722485,LOC107684656,LOC107666231,LOC107738399 coding upstream 739 23244537 ~ 23250136 (+)
LOC122323065 LOC107559809,LOC107684685,LOC101063805,LOC104959708,LOC102203720,LOC107587043 coding upstream 8163 23241473 ~ 23242712 (+)
tbxas1 tbxas1,LOC107722474,LOC107684653,LOC107587020,LOC107738402,LOC107559817 coding upstream 109970 23081027 ~ 23140905 (+)
fgd4a LOC107722468,LOC107670369,LOC107587027,LOC107684651,LOC107738409 coding upstream 361375 22849926 ~ 22889500 (+)
bicd1a bicd1,LOC107722484,LOC107738411,LOC107587026 coding upstream 401832 22817357 ~ 22849043 (+)
zgc:56622 zgc:56622,LOC107666229,LOC107738396,LOC107587047,LOC107722465,LOC107559805 coding downstream 3909 23262358 ~ 23266125 (+)
cotl1 cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015 coding downstream 12818 23271267 ~ 23276470 (+)
meak7 tldc1,LOC107587014,LOC107722463,LOC107738391,LOC107684679 coding downstream 25413 23283862 ~ 23288063 (+)
plcg2 plcg2,LOC107722471,LOC107738392,LOC107684680 coding downstream 31067 23289516 ~ 23305338 (+)
zgc:173742 zgc:173742,LOC107553995,LOC107684664,LOC107749320,LOC108415671,LOC106560872 coding downstream 530944 23789393 ~ 23814740 (+)
G128476 NA non-coding upstream 170565 23068310 ~ 23080310 (+)
G128475 NA non-coding upstream 183807 23066812 ~ 23067068 (+)
G128470 NA non-coding upstream 190934 23057387 ~ 23059941 (+)
G128469 NA non-coding upstream 193653 23057020 ~ 23057222 (+)
G128467 hipk2,LOC107722467,LOC107568633,LOC107587022,LOC107684678 non-coding upstream 196346 23053402 ~ 23054529 (+)
G128696 NA non-coding downstream 77342 23335791 ~ 23337089 (+)
G128699 NA non-coding downstream 100002 23358451 ~ 23359557 (+)
G128725 NA non-coding downstream 526575 23785024 ~ 23787163 (+)
G128753 NA non-coding downstream 770040 24028489 ~ 24029817 (+)
G128770 NA non-coding downstream 798271 24056720 ~ 24063271 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 812196 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 838918 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 2609816 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 2650356 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 2694248 20551148 ~ 20556627 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 198651 23457100 ~ 23736848 (+)
G128858 NA other downstream 1191316 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 1325396 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 2036294 25294743 ~ 25309740 (+)
mt2 NA other downstream 2087943 25346392 ~ 25348594 (+)

Expression


Co-expression Network