cotl1 (cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015)


Basic Information

Item Value
gene id cotl1
gene name cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23271267 ~ 23276470 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264187.1
TGACAGACAAATATCACTAACGCCCATTAAGAGGCAATAGGAAATGAATCGAGTCGTGAAATTAGTTGCCTCTCCATCCCACTGAGAGAAGAGACCTCCCTTCTACACCAGCAGCCCCTCTGTCGCACTTTGGGATTTATCCGCATTTTCTCGCATTCCCCCCCGGCTTTGTTCTGCATTTAGATACATTATCTCCCTTTGCATCGTCGAAATGGCAACGCGAATCGACAAAGAGGCTTGCAGAGAAGCATACAATCTGGTGCGAGACGACAGCTCAGATATATGCTGggcaTCTTTTAAGTATGACGGCTCTACCATCGTACCGGCTGGTCACGGGTCCGACTACGAAGAATTCAAGAGTCAGTGCACAGATGACAACCGACTCTTCGGGTTCGTAAGGATCACAACGGGTGATGCCATGAGCAAGCGCGCCAAATTCACCCTCATCACCTGGATCGGCGAAAACATCAGCGGACTGCAGAGAGCCAAGATTAGCACTGACAAGACACTGGTAAAAGACATCGTGCAGAACTTTGCCAAGGAGTTCATGATAAGTGATCCCAGAGAGCTGGAGGAGGAATATCTCCGCGGCGAGCTGAAAAAGGCCGGCGGGGCCAACTACGACGCCCAGGCCGAATAGAACTTGGGGGCGGGTTTTGGTGGAGAAGGAAGAGGAAAACGTcatctcatacacacacacacacacacgcacacacaaatatacacatacacataaatatacttaCCTCACCCCTCTTGCCAGTCTGGTCATGGTTGATTTATCTATCTACTGTACTGTGCATCATCTCAAAGTCATCTCTGCTAGCGCTATGAGGTTCTCTTTTTCTTCAGGGGCATTTTTGTAACTGTAGTTTTTGACGATGCTCCTTTTGGCTCAGAGTTGTCATCACTGTGATACGCTTCCATAATCAATAGAGAGCATACGAGTCTAGCGTTGTTTTCTAAAGGGGTTTATTATATATCTTCATCTCCCCTCTGAATACAGACCACTGTGTTTATGGTCTCAATCTCCCATGGAGAGGAAGACATCATGgaatgtgtgcatttgtgtatgtgtgtgtttgcagacaCTGCACTGTGACTGGCTAACTTGCATGCAGGGGGTGGAGTCTTAAAGGATCTTGtagctctgattggctgtttcgCACTCTCCACCCAACAAAGGGGCAGCCATTTCTCTAGTGTAGCCTTCATTTCGGTTTAATTTGAAATACCCAAGAAtgtcatatttctttttttttttttttattaaaagtaggttttatttgctttaaaacacaACCTGTGGTTCttcctttaaagtaaaaatgcctCCCGAGCcaagaaaagaaacaagatgGTCACAAAAGCAATCATGTCGgaataaagttgttgttttttt

Function

symbol description
cotl1 Predicted to enable actin filament binding activity. Predicted to be involved in regulation of actin filament polymerization. Predicted to be active in cortical actin cytoskeleton and plasma membrane. Predicted to colocalize with actin filament. Is expressed in blood; epidermis; and periderm. Orthologous to human COTL1 (coactosin like F-actin binding protein 1).

NR:

description
PREDICTED: coactosin-like protein

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264187.1 True 1402 mRNA 0.45 4 23271267 23276470

Neighbor

gene id symbol gene type direction distance location
zgc:56622 zgc:56622,LOC107666229,LOC107738396,LOC107587047,LOC107722465,LOC107559805 coding upstream 5142 23262358 ~ 23266125 (+)
tat tat,LOC107666226,LOC107559814,LOC107587016,LOC107684657 coding upstream 12818 23250875 ~ 23258449 (+)
LOC122362508 LOC107559815,LOC107722485,LOC107684656,LOC107666231,LOC107738399 coding upstream 21131 23244537 ~ 23250136 (+)
LOC122323065 LOC107559809,LOC107684685,LOC101063805,LOC104959708,LOC102203720,LOC107587043 coding upstream 28555 23241473 ~ 23242712 (+)
tbxas1 tbxas1,LOC107722474,LOC107684653,LOC107587020,LOC107738402,LOC107559817 coding upstream 130362 23081027 ~ 23140905 (+)
meak7 tldc1,LOC107587014,LOC107722463,LOC107738391,LOC107684679 coding downstream 7392 23283862 ~ 23288063 (+)
plcg2 plcg2,LOC107722471,LOC107738392,LOC107684680 coding downstream 13046 23289516 ~ 23305338 (+)
zgc:173742 zgc:173742,LOC107553995,LOC107684664,LOC107749320,LOC108415671,LOC106560872 coding downstream 512923 23789393 ~ 23814740 (+)
si:dkey-246g23.2 si:dkey-246g23.2,LOC107749300,LOC107553994,LOC107684666,LOC107670153,LOC107738383,LOC108415329 coding downstream 541583 23818053 ~ 23853275 (+)
kcng4a kcng4a,kcng4,LOC107749318,LOC107553964,LOC107738382,LOC107684667,LOC107670163 coding downstream 582566 23859036 ~ 23892165 (+)
G128476 NA non-coding upstream 190957 23068310 ~ 23080310 (+)
G128475 NA non-coding upstream 204199 23066812 ~ 23067068 (+)
G128470 NA non-coding upstream 211326 23057387 ~ 23059941 (+)
G128469 NA non-coding upstream 214045 23057020 ~ 23057222 (+)
G128467 hipk2,LOC107722467,LOC107568633,LOC107587022,LOC107684678 non-coding upstream 216738 23053402 ~ 23054529 (+)
G128696 NA non-coding downstream 59321 23335791 ~ 23337089 (+)
G128699 NA non-coding downstream 81981 23358451 ~ 23359557 (+)
G128725 NA non-coding downstream 508554 23785024 ~ 23787163 (+)
G128753 NA non-coding downstream 752019 24028489 ~ 24029817 (+)
G128770 NA non-coding downstream 780250 24056720 ~ 24063271 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 832588 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 859310 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 2630208 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 2670748 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 2714640 20551148 ~ 20556627 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 180630 23457100 ~ 23736848 (+)
G128858 NA other downstream 1173295 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 1307375 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 2018273 25294743 ~ 25309740 (+)
mt2 NA other downstream 2069922 25346392 ~ 25348594 (+)

Expression


Co-expression Network