LOC122362647 (ctsd,LOC107686244,LOC107672285,LOC107740314)


Basic Information

Item Value
gene id LOC122362647
gene name ctsd,LOC107686244,LOC107672285,LOC107740314
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24677660 ~ 24683938 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264191.1
GCCATAGCATCAGCTGACTGCAGCCGTTTGCCCTACATATCTGATCACACTACAACACTTTCAACACATCTACACTGCTCCTCAGATGCGTTAACAGGTCCCGACGGCTCGCCAACATGAGAATCGCCTGTCTGCTGCTAGCTGCTGCCTTGTTTTGGACGTCCGACGCGATAGTACGGATTCCTCTACAGAAGTTTCGTTCCATCAGGCGCACTATGAGTGACACTGGCCGAGCTGTAGAGGAGCTTGTGTCCAGTTCTGCATCACTGAAATACAACCTAGGCTTCCCAGCAAGTAATGGTCCTACTCCAGAGACCCTGAAAAACTACCTTGATGCTCAGTACTACGGAGAGATCGGTCTTGGCACTCCTGTCCAGACCTTCACTGTGGTGTTTGACACAGGATCCTCCAACCTGTGGGTGCCCTCGGTCCACTGTTCCCTGACTGACATTGCCTGCTTGCTTCATCACAAGTACAATGGGGGCAAGTCAAGCTCCTATGTGAAGAACGGGACTGAATTTTCCATACAGTATGGTTCCGGAAGCTTGTCTGGTTATCTCAGCCAGGACACATGCACGattgggGATATCGTGGTTGAGAAGCAGATATTTGGAGAAGCTATAAAACAGCCAGGAGTGGCTTTCATTGCAGCAAAGTTTGATGGGATTCTCGGGATGGCTTATCCTCGAATCTCCGTCGACGGGGTTCCTCCTGTTTTTGACATGATGATGAGCCAGAAGAAAGTggagaaaaatattttctctttctatCTGAACAGAAACCCTGACACCcaacctggtggtgagttgctTCTTGGAGGCACAGACCCTAAATATTACACTGGAGACTTTAACTACGTGGCCATCAGCAGACAGGCCTATTGGCAGATTCACATGGATGGcatgaGCATCGGCAGTGAGCTGACTCTGTGTAAAGGAGGATGTGAAGCCATCGTGGACACTGGGACGTCTCTGATCACCGGCCCAGCCGCTGAAGTCAAAGCCCTGCAGAAGGCTATCGGTGCAATCCCCCTGATCCAGGGAGAGTACATGGTGGACTGTAAGAAAGTGGCCACACTCCCCACCATCTCATTCGTCCTGGGAGGAAAGACTTACTCTCTGACTGGAGAACAGTACATACTCAAGGAAAGCCAGGCAGGAAAGGATATCTGTCTGAGTGGGTTCATGGGCCTGGATATCCCTCCCCCAGCTGGACCCCTGTGGATTCTGGGTGATGTGTTCATTGGGCAGTACTACACCGTGTTTGCGGAGAATAACAGAGTGGGCTTCGCTAAGTCAGTATAAACCCAACTGTAGAACTTAACACTTAAGATGTGTCATGAGAGTAATAAGAAATCTAGGAATCCGTCAACATCATTTCTACTCAGATGACACGATAGTGGTATGATTGTTTGTTTGCACTGCTTTTAGCTTTCAAATGTTTTCGTTTTAAAGAGTCGTGTGGAGCTGAAATGATTCAGGAAAAGTCAAAAAGATGACAAGTtacactcatttgcatttttagctTGAAGCTTGTTTGAATATCTGTAATTGTAACATGAggttttaacattaattttataattgtcATGTCATTGATTTTTAGACACTActtgttttcagatttttgttgaaaattaccTCCCACTGATTGAACAAATCAAAATGGacaataaaggttttaaaaccAA

Function

symbol description
ctsd Predicted to enable aspartic-type endopeptidase activity. Acts upstream of or within muscle structure development; response to bacterium; and retinal pigment epithelium development. Predicted to be active in lysosome. Is expressed in several structures, including eye; liver; muscle; pleuroperitoneal region; and unfertilized egg. Human ortholog(s) of this gene implicated in Alzheimer's disease; breast cancer; and neuronal ceroid lipofuscinosis 10. Orthologous to human CTSD (cathepsin D).

NR:

description
PREDICTED: cathepsin D

GO:

id name namespace
GO:0003406 retinal pigment epithelium development biological_process
GO:0009617 response to bacterium biological_process
GO:0006508 proteolysis biological_process
GO:0005764 lysosome cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K01379 CTSD; cathepsin D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264191.1 True 1690 mRNA 0.46 10 24677660 24683938

Neighbor

gene id symbol gene type direction distance location
LOC122362651 bhlhe41,LOC107686242,LOC107553967,LOC107672284,LOC107730473,LOC107583813,LOC107740304 coding upstream 1811 24671802 ~ 24675849 (+)
LOC122362645 itpr2,LOC107672258 coding upstream 17710 24590903 ~ 24659950 (+)
eea1 LOC107686240,LOC107583815,LOC107672259,LOC107740258 coding upstream 107439 24550432 ~ 24570221 (+)
nudt4a LOC107740279,LOC107672310,LOC107553971,LOC107686239 coding upstream 128280 24535296 ~ 24549380 (+)
ube2na ube2na,ube2nb,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528 coding upstream 143152 24527211 ~ 24534508 (+)
LOC122362646 bhlhe41,LOC107686242,LOC107553967,LOC107730473,LOC107672284,LOC107583813,LOC107740304 coding downstream 55087 24739025 ~ 24741360 (+)
LOC122362648 ctsd,LOC107686244,LOC107672285,LOC107740314 coding downstream 60927 24744865 ~ 24751103 (+)
lrriq1 lrriq1,LOC107672332,LOC107740429,LOC107583887 coding downstream 85458 24769396 ~ 24793099 (+)
alx1 alx1,LOC107672210,LOC107740463 coding downstream 111877 24795815 ~ 24801103 (+)
nts nts coding downstream 152309 24836247 ~ 24840156 (+)
LOC122362653 NA non-coding upstream 7816 24667484 ~ 24669844 (+)
G128863 si:ch211-219a15.3,LOC107553954,LOC107583920,LOC107740237,LOC107672306,LOC105898028 non-coding upstream 152606 24524527 ~ 24525054 (+)
G128859 NA non-coding upstream 218726 24458719 ~ 24458934 (+)
G128857 arntl2,LOC107749276,LOC107686234 non-coding upstream 232461 24444502 ~ 24445199 (+)
G128856 NA non-coding upstream 234501 24442373 ~ 24443159 (+)
LOC122362654 NA non-coding downstream 51249 24735187 ~ 24737012 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding downstream 155124 24839062 ~ 24856231 (+)
G129127 NA non-coding downstream 316792 25000730 ~ 25000930 (+)
G129125 NA non-coding downstream 329812 25013750 ~ 25016984 (+)
LOC122362644 NA non-coding downstream 350180 25034118 ~ 25049605 (+)
LOC122323037 NA other upstream 89323 24583845 ~ 24588337 (+)
G128858 NA other upstream 220100 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 940812 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2238981 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2265703 22400944 ~ 22411957 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 610805 25294743 ~ 25309740 (+)
mt2 NA other downstream 662454 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1237329 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 1268392 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 1545156 26229094 ~ 26332010 (+)

Expression


Co-expression Network