LOC122362648 (ctsd,LOC107686244,LOC107672285,LOC107740314)


Basic Information

Item Value
gene id LOC122362648
gene name ctsd,LOC107686244,LOC107672285,LOC107740314
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24744865 ~ 24751103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264192.1
GCGCCATAGCATCAGCTGACTGCAGCCGTTTGCCCTACATATCTGATCACACTACAACACTTTCAACACATCTACACTGCTCCTCAGATGCGTTAACAGGTCCCGACGGCTCGCCAACATGAGAATCGCCTGTCTGCTGCTAGCTGCTGCCTTGTTTTGGACGTCCGACGCGATAGTACGGATTCCTCTACAGAAGTTTCGTTCCATCAGGCGCACTATGAGTGACACTGGCCGAGCTGTAGAGGAGCTTGTGTCCAGTTCTGCATCACTGAAATACAACCTAGGCTTCCCAGCAAGTAATGGTCCTACTCCAGAGACCCTGAAAAACTACCTTGATGCTCAGTACTACGGAGAGATCGGTCTTGGCACTCCTGTCCAGACCTTCACTGTGGTGTTTGACACAGGATCCTCCAACCTGTGGGTGCCCTCGGTCCACTGTTCCCTGACTGACATTGCCTGCTTGCTTCATCACAAGTACAATGGGGGCAAGTCAAGCTCCTATGTGAAGAACGGGACTGAATTTTCCATACAGTATGGTTCCGGAAGCTTGTCTGGTTATCTCAGCCAGGACACATGCACGattgggGATATCGTGGTTGAGAAGCAGATATTTGGAGAAGCTATAAAACAGCCAGGAGTGGCTTTCATTGCAGCAAAGTTTGATGGGATTCTCGGGATGGCTTATCCTCGAATCTCCGTCGACGGGGTTCCTCCTGTTTTTGACATGATGATGAGCCAGAAGAAAGTggagaaaaatattttctctttctatCTGAACAGAAACCCTGACACCcaacctggtggtgagttgctTCTTGGAGGCACAGACCCTAAATATTACACTGGAGACTTTAACTACGTGGCCATCAGCAGACAGGCCTATTGGCAGATTCACATGGATGGcatgaGCATCGGCAGTGAGCTGACTCTGTGTAAAGGAGGATGTGAAGCCATCGTGGACACTGGGACGTCTCTGAACGGCCCAGCCGCTGAAGTCAAAGCCCTGCAGAAGGCTATCGGTGCAATCCCCCTGATCCAGGGAGAGTACATGGTGGACTGTAAGAAAGTGGCCACACTCCCCACCATCTCATTCGTCCTGGGAGGAAAGACTTACTCTCTGACTGGAGAACAGTACATACTCAAGGAAAGCCAGGCAGGAAAGGATATCTGTCTGAGTGGGTTCATGGGCCTGGATATCCCTCCCCCAGCTGGACCCCTGTGGATTCTGGGTGATGTGTTCATTGGGCAGTACTACACCGTGTTTGATCGGGAGAATAACAGAGTGGGCTTCGCTAAGTCAGTATAAACCCAACTGTAGAACTTAACACTTAAGATGTGTCATGAGAGTAATAAGAAATCTAGGAATCCGTCAACATCATTTCTACTCAGATGACACGATAGTGGTATGATTGTTTGTTTGCACTGCTTTTAGCTTTCAAATGTTTTCGTTTTAAAGAGTCGTGTGGAGCTGAAATGATTCAGGGAAAAGTCAAAAAGATGACAAGTtacactcatttgcatttttagccGAAGCTTGTTTGAATATCTGTAATTGTAACATGAggttttaacattaattttataattgtcATGTCATTGATTTTTAGACACTACTTGTTTTCAGATTTTAGTTGAAAATTGCCTCCCAgtgatttgaacaaatcaaaatggacaataaaggttttaaaaccAA

Function

symbol description
ctsd Predicted to enable aspartic-type endopeptidase activity. Acts upstream of or within muscle structure development; response to bacterium; and retinal pigment epithelium development. Predicted to be active in lysosome. Is expressed in several structures, including eye; liver; muscle; pleuroperitoneal region; and unfertilized egg. Human ortholog(s) of this gene implicated in Alzheimer's disease; breast cancer; and neuronal ceroid lipofuscinosis 10. Orthologous to human CTSD (cathepsin D).

NR:

description
PREDICTED: cathepsin D

GO:

id name namespace
GO:0003406 retinal pigment epithelium development biological_process
GO:0009617 response to bacterium biological_process
GO:0006508 proteolysis biological_process
GO:0005764 lysosome cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K01379 CTSD; cathepsin D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264192.1 True 1693 mRNA 0.46 10 24744865 24751103

Neighbor

gene id symbol gene type direction distance location
LOC122362646 bhlhe41,LOC107686242,LOC107553967,LOC107730473,LOC107672284,LOC107583813,LOC107740304 coding upstream 3505 24739025 ~ 24741360 (+)
LOC122362647 ctsd,LOC107686244,LOC107672285,LOC107740314 coding upstream 60927 24677660 ~ 24683938 (+)
LOC122362651 bhlhe41,LOC107686242,LOC107553967,LOC107672284,LOC107730473,LOC107583813,LOC107740304 coding upstream 69016 24671802 ~ 24675849 (+)
LOC122362645 itpr2,LOC107672258 coding upstream 84915 24590903 ~ 24659950 (+)
eea1 LOC107686240,LOC107583815,LOC107672259,LOC107740258 coding upstream 174644 24550432 ~ 24570221 (+)
lrriq1 lrriq1,LOC107672332,LOC107740429,LOC107583887 coding downstream 18293 24769396 ~ 24793099 (+)
alx1 alx1,LOC107672210,LOC107740463 coding downstream 44712 24795815 ~ 24801103 (+)
nts nts coding downstream 85144 24836247 ~ 24840156 (+)
eif4g2b eif4g2b,LOC107730533,LOC107569652,LOC107672256 coding downstream 239480 24990583 ~ 24999270 (+)
LOC122323238 NA coding downstream 244668 24995771 ~ 24995950 (+)
LOC122362654 NA non-coding upstream 7853 24735187 ~ 24737012 (+)
G129038 NA non-coding upstream 15886 24664451 ~ 24728979 (+)
LOC122362653 NA non-coding upstream 75021 24667484 ~ 24669844 (+)
G128863 si:ch211-219a15.3,LOC107553954,LOC107583920,LOC107740237,LOC107672306,LOC105898028 non-coding upstream 219811 24524527 ~ 24525054 (+)
G128859 NA non-coding upstream 285931 24458719 ~ 24458934 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding downstream 87959 24839062 ~ 24856231 (+)
G129127 NA non-coding downstream 249627 25000730 ~ 25000930 (+)
G129125 NA non-coding downstream 262647 25013750 ~ 25016984 (+)
LOC122362644 NA non-coding downstream 283015 25034118 ~ 25049605 (+)
G129134 NA non-coding downstream 291985 25043088 ~ 25043820 (+)
LOC122323037 NA other upstream 156528 24583845 ~ 24588337 (+)
G128858 NA other upstream 287305 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1008017 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2306186 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2332908 22400944 ~ 22411957 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 543640 25294743 ~ 25309740 (+)
mt2 NA other downstream 595289 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1170164 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 1201227 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 1477991 26229094 ~ 26332010 (+)

Expression


Co-expression Network