LOC122362651 (bhlhe41,LOC107686242,LOC107553967,LOC107672284,LOC107730473,LOC107583813,LOC107740304)


Basic Information

Item Value
gene id LOC122362651
gene name bhlhe41,LOC107686242,LOC107553967,LOC107672284,LOC107730473,LOC107583813,LOC107740304
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24671802 ~ 24675849 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264194.1
GCGCACACACATCATCATTCAGAGGTGCTGCGCGAGACCGGACACAACGCGCTGCCGCTCCGCCGATACTGGATTAACAAACCTGATTGTAAAAAGAAGGATACAAGAAAGTGGGACAAAGTTATGGATGAAAGAATACCGAGAATGCAGGGCAGACAGTTCCTGGATCACGCGGATTTCTTGGGgGTTGAATATTCGTCTCTCTACATGTGCAAATCCAAAAGAGGAGTgaagagagaggaaggaaaGGACGCGTATAAGTTACCGCACAGACTGATCGAGAAAAAGAGGAGGGACcgaataaatgaatgtattggGCAGCTGAAAGATTTATTACCGGAACATCTGAAGCTCACGACTCTAGGACACTTGGAAAAAGCGGTAGTTCTCGAGTTGACTCTGAAGCATTTGAACGCTTTGACAGCTGTCACAGAGCAGCAGCACCAGAAGATCATCGCTTTGCAGAACGGTAAATTACATAATGAGCGGTCGTTGAAGTCCTCCCTCCAGGCTGACTTAGACGCGTTTCACTCAGGCTTTCAAGCATGTGCCAAAGAAGCCCTGCAGTATCTGAACAAGGTGGAGAACTGGACGGCGCGCGAGCAGATGTGCACGCGACTCATCAACCACTTACACAAAGTTTCCGCTCAGTTCCAGCCTGGTGCAGGGATCCTGCAGCGGCCGTTGCCAGGCGACGACGCTCCCGAGCGGGACGCACAGAGGGATACTCAAGCCAACTGCGTCCCTGTCATCCAGAGGACTCAGAACCTCGAGCTTAACGAGAACGACACGGACACCGACAGCGGATATGGAGGAGAGGCAGAGAAAGGCGATGGCAAATGCGAGAAAGGTTGTGACACGGCCAAAGGAGTTAAGATCAAGCAGGAATTCGGAGATGAACGTGTCACCAAAAAAGCCAAAATGAACTGGTCAGCGAACAGCGCCTCAGAATCCGCCAATACCCGGCCGGACGTGGCGTTAATGAACTCTTTAATGGGAATGGCGGGTGTTGGTGGACAACAGACTCCCTTTTGCATGCCGTTTTACTTCATAAACCCATCTGCAGCAGCATCGTACATGCCTTTGTTTGATAAAAGTCACTTGGAGAAGTTGGTGTATccagcggcggcggcggcggctctGACCACCCCGTTCCCGTGGCTTTACCCCGGGATTCCCACGCATGCCTCCGCTGCAGCCGCGGCCGCCGCTGCCATCGCTTTCCCCAACGCTCCCGCCGATAAAACCTCTGGATTTAATGCAGCATCCTTAAAAGACGACGAGCCGCCATCTCCCGATGGTGACCTGTCCGAGGCCGACCTGGCCTCTCCTGTGTCTGGGGATCATCATGGCTCAGAGAATGATGCCATTCATCAGCCCCAAAGAAATGAAAACGATGGTACATAAAGCTGATCTTTTGCCCTTTGAGTGCACACTAGTTTGCTTGTAAAATTgctatttatctgtttatcttAATTTAATTGTCATTGAGTATTTACTATAGTGTTTCTATGGATTTCCAAGCAGAGGctgttcttttatttgtgtgttttttttagcattattgttATGAGGACTCaaaatttcaaatttcaaatctttttttaggGGAGAATTGGGGACATTATAACAGCCAGTGCCTTTTGCACTGATTCATTGagatatttgaatgaaaatccAATTCGCGGCCATCCAATGGCGTATTAGTATTGACCGAAAATGTGTGAAATCTCTGGGTTTTTTTCATTGTCgtagttgtctttttttcatttttggtgaagaAACTTAATTTAGTGCTGTACGTATTAACCTTCTTTAAGCTAACGAACGCCGCTTATCCTAGCGGAACGTTCCTTTCAAAGATTTGGACGTCACATATTGGACTCTTGGATGTAACGTTTGATATTGACCTCAAGCAGGCTGGTGTGACTGCTGCAGTATTTGTCAGATAATATAACTTTCTATTCTAGTACGACTGGATTTCGGTTGtattttgctctttttaaaGTTCAGTGCTTGAAAGGGTTACCTACATACCTCAACATACCGTAGTGTTTGGGATAGGACTCATTTCTTAGAGGTGCTCCTCTGGTAGGGGTGGTGACGAAATGTTTTGGGCGATTTTAATTGGACAAATGGCGTAAGCGACAACCCCTCTGATGTAATGTTACAGCAGTCCccgtctctttctctccctctcccgAACAATTAGTCTGAATCTCTTGTGAAGGAAATCAACACTCCAGATCAGAATGGCAGGACCAATCACCTGTCAGTCATCGCTGAGAGTGCTTTGCCAACAATCTGACAACATTGTCCTGTGTCACCTTTAGCAAAAATGTACAAGGTATATAATAGCACCTTATGGAACTTTGATATTGAATGTAATCTGTGTTCTTTTGGTAGATATAAAagtttgtactgtatatattctgATAAAAGTAGTTATTTAATCCAGAGGTAAAGTGCACTTTTTCTTGCCTTCTCAGTTTCCTATAACACAATCCTCACTCTTCGTTTTTAAGCCGATGCCCTTTGAACTCAAACTACGATATGTTTTTCTTAAGGAAATCTTCTTAAATACAAGGCAAGTATTGGAATATATGTATCTATAAATGTATGACATCATAATAATCTTGAGCTGGTATATTCAAACGTGTGAGCTGGCTCATTTTTAGCCTGAGACGGCTGTTGAAAAGTACGTAAGGTAAAACCTTTAAAGAGATGTGATTATATCAAATGTGTTTTGCCTTTTCTGAAATATTGTCACTATTCATGACTTCGAAAAGCTAAATGCGTTTGGGTCATGCTGTGTATTGTACAAATATTGTGGAGCACTGTAAAACATGACATGAATAAACGTGTAAATGGACCTTTTAGATTGGATAGATCTTAACAATCAGGAGATCGTGGACGTTTTTAttgaatgtgtttattatttagacCTGGGTTTATGAATGCATAGGAACAGTGATGTACCAGCTgccatttatttctgcattgtaaCACATTTCATAGGCCCTATAGTGTCTTTGCCTCAACTGTCATTTGCCTAAAAAGTGGCATGTGGATGTATATAGTTTGTGAATATGCTGTATGTTCAATGTTCATGTTGTAGAAGAAAtctatggatttttttaaaggataaaCTGAGCGACTGCTGCACATTTCCTTAATGCTTTACACATTTGCTGTTTGAAATTATGCAGCTCAGTTGTCAAATAAACATAAGCTCatgtgaacaaaa

Function

symbol description
bhlhe41 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of transcription, DNA-templated; response to cold; and sleep. Predicted to be active in nucleus. Is expressed in several structures, including brain; cardinal system; pleuroperitoneal region; shield; and swim bladder bud. Orthologous to human BHLHE41 (basic helix-loop-helix family member e41).

NR:

description
PREDICTED: class E basic helix-loop-helix protein 41-like

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03730 BHLHB3, DEC2; class B basic helix-loop-helix protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264194.1 True 3247 mRNA 0.43 5 24671802 24675849

Neighbor

gene id symbol gene type direction distance location
LOC122362645 itpr2,LOC107672258 coding upstream 11852 24590903 ~ 24659950 (+)
eea1 LOC107686240,LOC107583815,LOC107672259,LOC107740258 coding upstream 101581 24550432 ~ 24570221 (+)
nudt4a LOC107740279,LOC107672310,LOC107553971,LOC107686239 coding upstream 122422 24535296 ~ 24549380 (+)
ube2na ube2na,ube2nb,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528 coding upstream 137294 24527211 ~ 24534508 (+)
LOC122322916 LOC107749305,LOC107686322,LOC107553937,LOC107686321,LOC107553936 coding upstream 149315 24512132 ~ 24522487 (+)
LOC122362647 ctsd,LOC107686244,LOC107672285,LOC107740314 coding downstream 1811 24677660 ~ 24683938 (+)
LOC122362646 bhlhe41,LOC107686242,LOC107553967,LOC107730473,LOC107672284,LOC107583813,LOC107740304 coding downstream 63176 24739025 ~ 24741360 (+)
LOC122362648 ctsd,LOC107686244,LOC107672285,LOC107740314 coding downstream 69016 24744865 ~ 24751103 (+)
lrriq1 lrriq1,LOC107672332,LOC107740429,LOC107583887 coding downstream 93547 24769396 ~ 24793099 (+)
alx1 alx1,LOC107672210,LOC107740463 coding downstream 119966 24795815 ~ 24801103 (+)
LOC122362653 NA non-coding upstream 1958 24667484 ~ 24669844 (+)
G128863 si:ch211-219a15.3,LOC107553954,LOC107583920,LOC107740237,LOC107672306,LOC105898028 non-coding upstream 146748 24524527 ~ 24525054 (+)
G128859 NA non-coding upstream 212868 24458719 ~ 24458934 (+)
G128857 arntl2,LOC107749276,LOC107686234 non-coding upstream 226603 24444502 ~ 24445199 (+)
G128856 NA non-coding upstream 228643 24442373 ~ 24443159 (+)
LOC122362654 NA non-coding downstream 59338 24735187 ~ 24737012 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding downstream 163213 24839062 ~ 24856231 (+)
G129127 NA non-coding downstream 324881 25000730 ~ 25000930 (+)
G129125 NA non-coding downstream 337901 25013750 ~ 25016984 (+)
LOC122362644 NA non-coding downstream 358269 25034118 ~ 25049605 (+)
LOC122323037 NA other upstream 83465 24583845 ~ 24588337 (+)
G128858 NA other upstream 214242 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 934954 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2233123 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2259845 22400944 ~ 22411957 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 618894 25294743 ~ 25309740 (+)
mt2 NA other downstream 670543 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1245418 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 1276481 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 1553245 26229094 ~ 26332010 (+)

Expression


Co-expression Network