CI01000001_03489900_03496853 (PROSC)


Basic Information

Item Value
gene id CI01000001_03489900_03496853
gene name PROSC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3488886 ~ 3496853 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03489900_03496853.mRNA
ATGGCTGATGTATGTTCGCGCACTGAGGCTATGAGGAGAGTAGTGATGTCGGAGGAGGTTGGGAAGAAATTGCAGGCGGTGGTGGACCGGGTGAATCAAGCGGTTTCCCGTCGCCCGAAGACGTTACCATGTATAGCCCCTCGGCTAGTTGCAGTTAGTAAGACTAAACCTCCGGAGATGGTGGTGGAGGCTTACAAACATGGACAACGAAACTTTGGAGAGAATTATGTAAATGAACTTGTTGAGAAAGCTTCCCATCCCCAGGTTGTGTTGTCATGTCCTGAAATAAAATGGCATTTCATCGGTCATCTGCAAAAGAATAACGTCAACAAACTCCTGGGTGTCCCAAACCTGTATATGGTAGAGACGATCGACTCTGTGAAACTGGCTGAAAAAGTCAACAGCTCGTGGCAAAAAATGAGAGCTGCCAACACGCAGAGGTTAAAGATTATGGTTCAGATCAACACCAGTGGAGAGGAAAGTAAACATGGCCTGCCACCTGATGAGATTGTAAACATGGTAAAACATGTCGTATCTCAGTGTTCTGCTCTTGACTTCGCCGGGCTCATGACGATCGGCCGTTACGGTTATGACCTTAGTGAAGGCCCCAACCCCGACTTCCAGATGCTGTTGAAACATCGTGATGAAGTTTGTGAGAGTCTGAAGATCCCAGCAGAGCAGATTGAACTCAGTATGGGCATGTCTAATGACTTTGAACATGCGATCGAGGTTGGCTCCACCAACATACGTGTCGGCAGCACTATTTTCGGCACCAGAGAATACCCCAACACCCCGAGCCCCAGTCCAGAGAAAAAGCCAATGGTCGTATGTGAGGAAGCAGCCAGGAAAATGGACCGGCTTACCGTCACAGAGAAATGAATGATGAGGGGGAAAAAAAGGTTACTGAACTAAATGTGGGACCTCTTGGGCTTTTTCCCAATGACTGGGCTCACCATTCACCAGTCAAGGGCCTTTAATGTCTTAACTAATGCTGCTGACCTGGTCTTCTGTGGCGAAAGAAGTGTAATTTGGAACTGGAATACTAAATTTACTTCCTGAAGGTGTTTTTATTATCAAAAGATCTCCAGAAGTGTCCTCCACCCCTTTGTCAAACACTTAGCCTTGATTTTGTGATTATTTTTTAGCAGATACAGGGTCAGCACATGCTCAGTTTTGTTGTGCCAATCGTAGATGTGTTAAGTATTATTTCTGTCATTTCAGTTAGATTAGATGTTATCAGTTGTAACTCATTTTAACATCTAATAGGATGTATTTTTGTTCCTAGAAGTGTGTAGGTATATTTTATAGTGTGTCTGTGTACTGTTTTGTTCGAAATCATAAATGTAAATGACATGAATTGCACATTTATGGTATTGCTTCTGTATCCACTTCTGCTGTGTCAATGAGTTGTGTCGGGACTGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTTGTCATATAGTTCATGTAGTGATTCATGTCACCCTAAACACTGGTGTTGAATTTAGCACTGATCAACAGCCACATTGGTTTCAGTACAGAACATAGAAATGTGCAATGAGATCAGTGCAGAGACGAACTGTTTTATGGAGTATTGAAGACGTTGAGGGCCTGAGGCCATTTACTATGCAAGAGAGAGATTGTTCTGATTCTTACATGCTTGTTTAGAGGCAATCACATCATATTTTTGTTTTTAAATTTTGGATTAATATAGTGTTGTCGAACTAATGGGTTTACTGTTTGTGGTCAGTTGTGAAAAACCAAAACTGAAATTATAACATCCTTTTTTTCTAATCAGTGTGACAAATAACATTGTGTATCTTGTCAATAGATAGTTGTACATAGATATTTAATTGATTAAGGTGAGTTGAGCAATAAA

Function

symbol description
prosc PLP dependent protein

GO:

id name namespace
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K06997 yggS, PROSC; PLP dependent protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03489900_03496853.mRNA True 1893 mRNA 0.42 8 3488886 3496853

Neighbor

gene id symbol gene type direction distance location
CI01000001_03474495_03481164 NA coding downstream 7453 3474495 ~ 3481433 (-)
CI01000001_03465138_03473769 NA coding downstream 15117 3464733 ~ 3473769 (-)
CI01000001_03455306_03461493 SARS coding downstream 26984 3454607 ~ 3461902 (-)
CI01000001_03402460_03453617 CHCHD6A coding downstream 35269 3402460 ~ 3453617 (-)
CI01000001_03277026_03283028 PLXNA1 coding downstream 205436 3275743 ~ 3283450 (-)
CI01000001_03497808_03500098 RUXG, SNRPGP15, SNRPG.S, SNRPG coding upstream 815 3497483 ~ 3500208 (-)
CI01000001_03502743_03504170 NA coding upstream 5834 3502687 ~ 3504170 (-)
CI01000001_03515448_03525499 CS, CS.L coding upstream 18119 3514972 ~ 3525499 (-)
CI01000001_03534862_03537560 NA coding upstream 37454 3534307 ~ 3537560 (-)
CI01000001_03603684_03607612 NA coding upstream 106493 3603346 ~ 3607612 (-)
G15030 NA non-coding downstream 1479 3485842 ~ 3487407 (-)
G15065 NA non-coding downstream 123041 3365437 ~ 3365845 (-)
G15064 NA non-coding downstream 123653 3365034 ~ 3365233 (-)
G15052 NA non-coding downstream 143491 3344971 ~ 3345395 (-)
G15050 NA non-coding downstream 145095 3343393 ~ 3343791 (-)
G15113 NA non-coding upstream 196739 3693592 ~ 3702229 (-)
G15099 NA non-coding upstream 238933 3735786 ~ 3738369 (-)
G15097 NA non-coding upstream 307481 3804334 ~ 3835923 (-)
G15151 NA non-coding upstream 350621 3847474 ~ 3847704 (-)
CI01000001_02258523_02262621 NA other downstream 1191674 2258442 ~ 2263103 (-)
G14228 NA other downstream 1432408 2055974 ~ 2056478 (-)
G14219 NA other downstream 1493988 1994210 ~ 1994898 (-)
G14104 NA other downstream 1721428 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 3091753 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 895461 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 979431 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 1072229 4725927 ~ 4728210 (-)
G15736 NA other upstream 1304048 4800901 ~ 4801395 (-)
G16332 NA other upstream 1453836 4950689 ~ 4957842 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location