CI01000001_03497808_03500098 (RUXG, SNRPGP15, SNRPG.S, SNRPG)


Basic Information

Item Value
gene id CI01000001_03497808_03500098
gene name RUXG, SNRPGP15, SNRPG.S, SNRPG
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 3497483 ~ 3500208 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_03497808_03500098.mRNA
ATGAGCAAAGCACATCCTCCTGAGCTGAAAAAATTTATGGACAAGAAGCTTTCACTGAAGCTCAACGGTGGTCGTCATGTTCAGGGCATCTTGCGTGGATTTGATCCCTTCATGAATCTGGTCGTTGATGACACTATAGAAATGGCTCCAGGAGGACAGATGAACACCATTGGGATGGTGGTAATCAGAGGAAACAGCATAATCATGTTGGAGGCTCTTGAACGAGTATGAGGAACATGCCCAGCTTTTTTCCTGCTTTTCTGAATTATTTTTTTTTTCTTTTTTGCATCCAGCCAAGCTAATATCAAAATGGGTTTCTCATGTCTGTTTACAACAAAGGCTAAATACTAATGCAGAAATCCTTGATTAAA
>TU16783
CCGCGACCTCGAACGCCACTTCCTGCACTTGAGGCATCTTTCTTTCCGTTGTTTGAAACGTGTTTCAAACGTTTTTGTTTCACAAAAGTGTTAGATCTAACTAAATAAACATGAGCAAAGCACATCCTCCTGAGCTGAAAAAATTTATGGACAAGAAGCTTTCACTGAAGCTCAACGGTGGTCGTCATGTTCAGGGCATCTTGCGTGGATTTGATCCCTTCATGAATCTGGTCGTTGATGACACTATAGAAATGGCTCCAGGAGGACAGATGAACACCATTGGGATGGTGGTAATCAGAGGAAACAGCATAATCATGTTGGAGGCTCTTGAACGAGTATGAGGAACATGCCCAGCTTTTTTCCTGCTTTTCTGAATTATTTTTTTTTTCTTTTTTGCATCCAGCCAAGCTAATATCAAAATGGGTTTCTCATGTCTGTTTACAACAAAGGCTAAATACTAATGCAGAAATCCTTGATTAAAATGTTCTGTTTTATATAAACTTTTTTTTTTTATGTATTTTCTTATGCCTGTAAAAATTTGTGTACACAATTCATAAAACATTTTTGTGAATAAATGGACTACAATGTGATTATCTTTTTTTTTTATTTTTTTTTTTTTATTCATATTTGATTGGTGTATTATTCAACAGTCAACTTTTTTTCACC
>TU16782
CCGCGACCTCGAACGCCACTTCCTGCACTTGAGGCATCTTTCTTTCCGTTGTTTGAAACGTGTTTCAAACGTTTTTGTTTCACAAAAGTGTTAGATCTAACTAAATAAACATGAGCAAAGCACATCCTCCTGAGCTGAAAAAATTTATGGACAAGAAGCTTTCACTGAAGCTCAACGGTGGTCGTCATGTTCAGGGCATCTTGCGTGGATTTGATCCCTTCATGAATCTGGTCGTTGATGACACTATAGAAATGGCTCCAGGAGGACAGATGAACACCATTGGGATGGTGGTAATCAGAGGAAACAGCATAATCATGTTGGAGGCTCTTGAACGAGTATGAGGAACATGCCCAGCTTTTTTCCTGCTTTTCTGAATTATTTTTTTTTTCTTTTTTGCATCCAGCCAAGCTAATATCAAAATGGGTTTCTCATGTCTGTTTACAACAAAGGCTAAATACTAATGCAGAAATCCTTGATTAAAATGTTCTGTTTTATATAAACTTTTTTTTTTTATGTATTTTCTTATGCCTGTAAAAATTTGTGTACACAATTCATAAAACATTTTTGTGA

Function

symbol description
snrpg Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus. Predicted to be part of SMN-Sm protein complex and nucleus. Predicted to be active in P granule. Is expressed in liver. Orthologous to several human genes including SNRPG (small nuclear ribonucleoprotein polypeptide G).
snrpgp15 Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of SMN-Sm protein complex and nucleus. Predicted to be active in P granule.

GO:

id name namespace
GO:0000245 spliceosomal complex assembly biological_process

KEGG:

id description
K11099 SNRPG, SMG; small nuclear ribonucleoprotein G

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_03497808_03500098.mRNA False 371 mRNA 0.40 4 3497668 3500098
TU16783 False 666 lncRNA 0.35 4 3497483 3500208
TU16782 True 570 lncRNA 0.34 4 3497579 3500208

Neighbor

gene id symbol gene type direction distance location
CI01000001_03489900_03496853 PROSC coding downstream 815 3488886 ~ 3496853 (-)
CI01000001_03474495_03481164 NA coding downstream 16235 3474495 ~ 3481433 (-)
CI01000001_03465138_03473769 NA coding downstream 23899 3464733 ~ 3473769 (-)
CI01000001_03455306_03461493 SARS coding downstream 35766 3454607 ~ 3461902 (-)
CI01000001_03402460_03453617 CHCHD6A coding downstream 44051 3402460 ~ 3453617 (-)
CI01000001_03502743_03504170 NA coding upstream 2589 3502687 ~ 3504170 (-)
CI01000001_03515448_03525499 CS, CS.L coding upstream 14874 3514972 ~ 3525499 (-)
CI01000001_03534862_03537560 NA coding upstream 34209 3534307 ~ 3537560 (-)
CI01000001_03603684_03607612 NA coding upstream 103248 3603346 ~ 3607612 (-)
CI01000001_03623291_03628923 DAZAP2 coding upstream 123125 3623223 ~ 3628923 (-)
G15030 NA non-coding downstream 10261 3485842 ~ 3487407 (-)
G15065 NA non-coding downstream 131823 3365437 ~ 3365845 (-)
G15064 NA non-coding downstream 132435 3365034 ~ 3365233 (-)
G15052 NA non-coding downstream 152273 3344971 ~ 3345395 (-)
G15050 NA non-coding downstream 153877 3343393 ~ 3343791 (-)
G15113 NA non-coding upstream 193494 3693592 ~ 3702229 (-)
G15099 NA non-coding upstream 235688 3735786 ~ 3738369 (-)
G15097 NA non-coding upstream 304236 3804334 ~ 3835923 (-)
G15151 NA non-coding upstream 347376 3847474 ~ 3847704 (-)
G15093 NA non-coding upstream 364074 3864172 ~ 3867265 (-)
CI01000001_02258523_02262621 NA other downstream 1200456 2258442 ~ 2263103 (-)
G14228 NA other downstream 1441190 2055974 ~ 2056478 (-)
G14219 NA other downstream 1502770 1994210 ~ 1994898 (-)
G14104 NA other downstream 1730210 1763669 ~ 1771468 (-)
CI01000001_00362143_00378213 NA other downstream 3100535 361614 ~ 378213 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 892216 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 976186 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other upstream 1068984 4725927 ~ 4728210 (-)
G15736 NA other upstream 1300803 4800901 ~ 4801395 (-)
G16332 NA other upstream 1450591 4950689 ~ 4957842 (-)

Expression


Co-expression Network