hacd3 (hacd3,LOC107672296,LOC107738726,LOC107583769,LOC107742880,LOC107596982)


Basic Information

Item Value
gene id hacd3
gene name hacd3,LOC107672296,LOC107738726,LOC107583769,LOC107742880,LOC107596982
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25940729 ~ 25943948 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264335.1
CGCACTCGAAGAATATTCTGGACAAATGACAGAATCCTTGGAAACGTCTTCCGGATGCTTGTTGCAAGATTTACATCGCCCGTCATTCATTGTTAAATCTGAGTAAGGCGCGTTATTTAATGTGAATATTTGCGATGCGGGCTCTCACACCTCACGTGTACTGGGCGCAGCGGCATGGGGAGATATACCTGCGAGTGGAGATCAGTGATGCACAGAATCTCAGTATTGGCGTAGAAGAGAACATTCTTCAATTCAAAGGACAAGGGCATGGAGCAAAAGGagaaaatgaatatgaattcaGTCTGGAATTCCTAAAAGCCGTTAAACCCGAGGTGAAACACAAATCCACCCAGCGGCAGGTGAATATCACAGTAAGGAAGAAGGAGCACGTCTGGTGGGACCGACTCACTAAACAAGAGAAGAAGCCACTGTTTTTAGCACCTGATTTTGACCGCTGGCTGGATGAGTCAGATGCAGAAATGGAGCTCAGAGAGAAGgaagagaaaataaacaaaatcagcATTGAGTCGAGGGTTCGTAAGGACCCTTTTCTTGGCTTAAAAGGGTTTCTCTTTATGTACAACTTGGTCCAGTTCCTCGGTTATTCCTGGATATTTGTTAACATGACTGTACGTCTGTTCATTCTTGGGCAAGATTCATTCTATGATACATTCCATACCATTGCCGACGTGATGTACTTCTGCCAGATGCTGGCAATAATGGAGGTTATTAATCCTGCTATTGGGTTGGTTAAGACTGGAGTCATGCCTGCTTTCATTCAGGTGATGGGGAGGAACTTCATCCTTTTTGTCATATTTGGCACATTAGATGACATGCAGAACAAGCCAGTGGTCTTTTTCGTTTTTTATCTGTGGAGTATGATTGAGATATTCAGGTATCCTTTCTACATGCTGGCctgcattttgtaa

Function

symbol description
hacd3 Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in neurons; peripheral nervous system; trigeminal placode; and vasculature. Orthologous to human HACD3 (3-hydroxyacyl-CoA dehydratase 3).

NR:

description
tyrosine phosphatase-like protein ptplad1

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016829 lyase activity molecular_function

KEGG:

id description
K15730 PTGES3; cytosolic prostaglandin-E synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264335.1 True 929 mRNA 0.44 10 25940729 25943948

Neighbor

gene id symbol gene type direction distance location
arih1 arih1,LOC107742882,LOC107672283,LOC108423892,LOC107549652,LOC107686289 coding upstream 19754 25906919 ~ 25920975 (+)
LOC122322950 LOC107549654,LOC107576747,LOC107672203,LOC107742895,LOC107686352 coding upstream 37814 25897542 ~ 25902915 (+)
trnal-cag_32 NA coding upstream 43224 25897423 ~ 25897505 (+)
st3gal2 st3gal2,LOC107742884,LOC107672232,LOC107686287 coding upstream 64997 25854441 ~ 25875732 (+)
siah1 siah1,LOC107742888,LOC107549647,LOC106573709 coding upstream 136819 25787334 ~ 25803910 (+)
LOC122362626 LOC107672296,LOC107738726,LOC107742880,LOC107686290,LOC107596982,LOC107583769 coding downstream 247056 26191004 ~ 26196388 (+)
LOC122362692 LOC107719968,LOC107671151,LOC101886608 coding downstream 356968 26300916 ~ 26303177 (+)
LOC122323090 LOC107710382,LOC107686534,LOC107560047,LOC107719970,LOC107671152,LOC107599867 coding downstream 402064 26346012 ~ 26357471 (+)
G129370 NA non-coding upstream 263868 25676557 ~ 25676861 (+)
G129368 NA non-coding upstream 265419 25675071 ~ 25675310 (+)
G129360 NA non-coding upstream 277144 25662497 ~ 25663585 (+)
G129270 fam192a non-coding upstream 498288 25440048 ~ 25442441 (+)
G129262 NA non-coding upstream 591691 25348756 ~ 25349038 (+)
G129435 NA non-coding downstream 23068 25967016 ~ 26221023 (+)
G129438 arih1,LOC105007423,LOC107738728,LOC107686289 non-coding downstream 212959 26156907 ~ 26158502 (+)
G129427 NA non-coding downstream 216077 26160025 ~ 26160419 (+)
G129446 NA non-coding downstream 268982 26212930 ~ 26213344 (+)
G129455 NA non-coding downstream 388278 26332226 ~ 26335988 (+)
mt2 NA other upstream 592135 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 630989 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 1352392 24583845 ~ 24588337 (+)
G128858 NA other upstream 1483169 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 2203881 23457100 ~ 23736848 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 8382 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 285146 26229094 ~ 26332010 (+)
G129468 cpt1b,LOC107710383,LOC107686536,LOC107599889,LOC107671150 other downstream 359939 26303887 ~ 26306806 (+)

Expression


Co-expression Network