cpne2 (cpne2,LOC107583787,LOC107740309,LOC107672324)


Basic Information

Item Value
gene id cpne2
gene name cpne2,LOC107583787,LOC107740309,LOC107672324
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25417863 ~ 25436773 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264351.1
GCGTATCCCGTTTTCCATGAAATCACATGTGGAACATGTCATTATTCTTGGAATGATTACCAACACTGCGCTATATAAGGCTAATTTAAATACAGAGTTCATTGAGAATCCGAACAGCTCTAGAGCAAAGATGCCGTTTTGGGATGGAAACTCAGGGATTGGGAGACGAGGTACTCCCATCTCCATGGCCTATACTCTGGCCTCGGGCCCCGATGTGGGTCCTGCCATTGGGCCCCAGCACTGCGTCACAAAGGTAGAGCTCTCCGTCTGTGGCTCCAACTTGCTAGACCGTGACGTGGCATCCAAGTCTGACCCCTTCTGTGTTCTTTTCCATGATGTGGATGGCAACTGGGTGGAGCTGGCTCGAACAGAGACTGCCGTGAATAACCTGAATCCAGTATTTGGTGTCAAATTCCAAGTGGATTACCATTTTGAGGAAGTCCAGAAGCTGAAGTTTGCCATGTTTGATGAGGACAAATGCAGCTCCCAGCTTACGAACGACTTTTTGGGTGAATTCACCTGCACACTGGGAGTGATTGTGTCAAATAAGAAGCTACATCGACCACTGATTCTGGCTAATGGCAAGCCAGCAGGGAAGGGGGCCATCACAATAACAGCCCAGGAGTTATCAGACAACAGAATAATCACCCTAACCATGTGTGGGAGGAAGCTGGATAAAAAGGACTTTTTCGGTAAATCAGATCCCTATTTAGAATTCCACAAACAAGGGGATGATGGGAAATGGATGATGGTTCACAGAACAGAGGTTATTAAGAACACTTTGGATCCTGTATGGAAGCCTTTCACGGTGCCTCTAATCTCACTTTGTAATGGAGATGTGGACAGAAACATCAAGGTGCTGTGCTATGATTACGACAACGACGGAAGCCATGACTTCATCGGCGAGTTTCAGACCACCGTTAACAAGATGAGTGAAGCACTGAACGGAATGGAGGTTGAGTTTGAATGCATTAATCCtaaaaaacagaagaagaagagctaCAAAAACTCTGGGGTCATAATATTGAAGTCATGCAAGATTACGAGAGACTACTCCTTCCTGGACTACATTCTGGGTGGCTGTCAGCTCATGTTTACTGTTGGCATTGATTTCACAGCGTCCAATGGCAACCCCAGGGAGCCATCGTCTCTGCATTATATCAACCCAATGGGCAGCAACGAATATCTGTCCGCCATCTGGGCTGTAGGCCAGATCATTCAAGACTATGACACGGACAAAATGTTTCCTGCACTTGGATTTGGGGCTCAACTCCCACCCGACTGGAAGGTATCCCATGAATTTGCAATCAACTTCAACCCCACCAACCCTTTTTGCTCAGGTGTGGAGGGGATCGTTCAAGCTTATTCCAACTGCCTGCCTCACATCCGCTTCTATGGACCAACTAACTTTGCCCCCATCATCAACCATGTGGCCCGCTTCGCTACCCAGGCCCTCCAACAGGACACTGCAGCACAATACTTCACACTACTGATCATTACTGACGGCGTAATCAGCGACATGGACGAGACGCGTCACGCTATAGTTCAAGCCGCCAAGCTGCCCATGTCCATTATTATCATTGGGGTGGGCAACGCCGACTTCACTGCTATGGAGTTTTTGGACGGAGACAGCAGCGCGCTCAGATCCTACACGGGAGAGGAGGCGGTCCGAGACATCGTGCAGTTTGTCCCATTCAGGGACTTTCGCAACGCTCCGAAGGAAACTTTAGCCAAGTCCGTATTGGCAGAGCTGCCGCAACAGGTCACACAGTATTTCAAACAGAGGAACCTGTCGCCTAGCAACACAATGCCGGAATAAGCGCTGGAGGCCCGGAGTTCACACTGCATGTTGCCAAAACCTGCTAACTGTTTACAGACCCCCCTTGACCAATTCAATGAACATAGTGCATGTTATTTTCTGTACAGAAGTGTTTTtagtatatgtttttatttattggtttatatATAGACAGTATATATGATGATCTAAACGCAATGGCCATTTGTGTGTCTGTCACAAAATATGTAACAGTATTCAGCTGAATGTAACTTTATACCgccattttctgtgttttaagaGAAGTGAAAGCTAAAGAGTACTTTATGTAGTGATTTGTACTTAGTGCTAATCGTACGGTGCCATGGTCAAGGTGGTGTTGTTGATTTTGTACAGTTTTATCGGTTGTTTATGTTCCACTCAGGTCAATAAATTTCATTTGAGAACATCA

Function

symbol description
cpne2 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE2 (copine 2).

NR:

description
copine-2 isoform X1

GO: NA

KEGG:

id description
K24524 CPNE1_2_3; copine 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264351.1 True 2228 mRNA 0.46 17 25417863 25436773

Neighbor

gene id symbol gene type direction distance location
nlrc5 nlrc5,LOC107580006 coding upstream 4606 25394882 ~ 25413257 (+)
LOC122362468 cetp coding upstream 23622 25389034 ~ 25394241 (+)
herpud1 herpud1,LOC107686272,LOC107549637,LOC107740310,LOC107672290 coding upstream 30003 25381708 ~ 25387860 (+)
slc12a3 slc12a3,LOC107740340,LOC107583876 coding upstream 36720 25371705 ~ 25381143 (+)
nup93 nup93,LOC107549634,LOC107740311,LOC107583877 coding upstream 46396 25349481 ~ 25371467 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding downstream 8816 25445589 ~ 25457287 (+)
si:ch211-216l23.2 LOC107549641,LOC107740307,LOC107583785,LOC107672316 coding downstream 21225 25457998 ~ 25464103 (+)
znf423 si:ch211-216l23.1,LOC107738741,LOC107583782,LOC107740334,LOC107672235,LOC107549642 coding downstream 34301 25471074 ~ 25612128 (+)
si:ch211-212o1.2 si:ch211-212o1.2,tmem189,LOC107738740,LOC107740306,LOC107672277,LOC107583780,LOC108264382,LOC106560866 coding downstream 177440 25614213 ~ 25639371 (+)
cbln1 cbln1,LOC107549644,LOC107583779,LOC106573707 coding downstream 219871 25656644 ~ 25662430 (+)
G129262 NA non-coding upstream 68825 25348756 ~ 25349038 (+)
G129246 NA non-coding upstream 129326 25288143 ~ 25288537 (+)
G129135 NA non-coding upstream 276004 25063454 ~ 25141859 (+)
LOC122362644 NA non-coding upstream 368258 25034118 ~ 25049605 (+)
G129270 fam192a non-coding downstream 3275 25440048 ~ 25442441 (+)
G129360 NA non-coding downstream 225724 25662497 ~ 25663585 (+)
G129368 NA non-coding downstream 238298 25675071 ~ 25675310 (+)
G129370 NA non-coding downstream 239784 25676557 ~ 25676861 (+)
G129435 NA non-coding downstream 530243 25967016 ~ 26221023 (+)
mt2 NA other upstream 69269 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 108123 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 829526 24583845 ~ 24588337 (+)
G128858 NA other upstream 960303 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1681015 23457100 ~ 23736848 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 484494 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 515557 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 792321 26229094 ~ 26332010 (+)
G129468 cpt1b,LOC107710383,LOC107686536,LOC107599889,LOC107671150 other downstream 867114 26303887 ~ 26306806 (+)

Expression


Co-expression Network