LOC122362807 (srgap1a,srgap1,LOC107670373,LOC108264626)


Basic Information

Item Value
gene id LOC122362807
gene name srgap1a,srgap1,LOC107670373,LOC108264626
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22583917 ~ 22622188 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264390.1
CTCTTTCAACAAACCATGTTTGGTTCTTTTTGTTCAGAGATCCGAGCCCAACTGGTGGAACAGCAGAAATGTCTGGAGCAGCAGACGGACATGAGGGTCCAGCTCCTTCAGGACCTTCAGGACTTCTTCCGCAAGAAGTCCGAGATCGAGATGGAGTACTCGCGCAACCTGGAGAAGCTCGCCGAACGCTTTATGGCCAAGACCAGGAGTACCAAGGACCATCAGCAATATAAGAAAGACCAGAATCTGCTGTCTCCGGTCAACTGCTGGTATCTGTTGCTGAACCAGGTTCGACGGGAGAGCAAAGACCATGCGACTCTGAGCGACATTTACCTGAACAACGTCATCATGCGCTTCATGCAGATTAGTGAAGACTCCACGCGTCTTCTGAAAAAGagTAAAGAAATCACCTTTCAAATGCAAGAGGATTTGATGAAAGTCCTCAACGAGCTCTACACGGTGATGAAGACGTATCACATGTACCACACGGAGAGCATCAGTGCAGAAAGCAAACTGAAGGAGGCTGAGAAACAAGAAGAGAAGCAGTTTAGCAAGTCTGGAGACCTCAATGTCAACCTCCTGCGCCACGAGGACAGACCCCAGCGCCGCAGCTCGGTCAGGAAGATTGAGAAGATGAAGGAGAAGAGACAGGCCAAGTACTCAGAGAACAAGCTGAAGTCGATCAAAGCTCGGAACGAATACCTGCTGACGCTCGAAGCCACTAATGCTTCAATCTTCAAGTATTACATTCACGACTTGTCTGATTTAATAGACTGTTGTGATCTGGGATATCATGCCTCTCTGAACCGGGCTCTGCGGACCTACCTCTCAGCTGAATATAACCTGGAGACGTCTCGTCACGAGGGCCTGGACATCATTGAGAATGCAGTGGACAGTCTGGACCCCCGTAGTGACCGCCAGCGCTTCATGGAAATGTACCCTACCGCTTTCTGCCCGCCTGTTAAATTTGAGTTTCAGCCACATATGGGAGATGAGGTGTGTCAGATCACGGCCCAGCCTCCAGTGCAAGCAGAGCTTCTCCTGAGGTTCCAGCAGCTTCAATCTCGTCTGGCCACCCTAAAGATCGAGAACGAAGAGATCAAGAAGACCTCAGAGGCCACTCTCACTACTATCCAGGACATGGTGACCATCGAGGACTATGACGTGTCTGAATGTTTTCACCACAGCCGCTCCACTGAATCAGTCAAGTCCACCGTGTCGGAAACCTACCTCAGCAAGCCGAGCATTGCCAAGAGACGCGCCAACCAACAGGAGACGGAGCAGTTCTATTTCATGAAGTTTCGCGAATATCTGGAGGGCAGCAATCTTATCACTAAGCTTCAGGCAAAGCATGATCTGCTGAAGAGGACCCTCGGTGATGGTTACCGGCCTGAGTATGCAActacaagCCGTGGACGACGGAACTCACACACAAGGCACCAGGactCTGGACAAGCAATACCGAGAGTTGTTGAGAGCTGTATTCGATTCATCAATCTGTATGgCCTTCAGCATCAAGGAATATTCAGAGTGTCTGGATCTCAAGTTGAAGTCAATGATATCAAGAACTCTTTTGAGAgaggtAATGATCCTCTGACAGATGAAGAGAATAACCACGATATCAACTCTGTCGCGGGAGTTTTGAAACTCTACTTTCGAGGTTTGGAGAACCCTCTGTTTCCAAAGGAAAGGTTTAGTGATCTCATCTCTTGTGTCAagaTGGAAAATATGACAGAAAAAGTAGCGCAGATAAAGATCATAATCTCGTCCTTCCCCAGACCAGTCATCATAGTGATGCGGTATCTCTTCGCCTTCCTTCATCATGTCTCTCAGTACAGTGATGAGAACATGATGCAGCCATATAACCTGGCCGTGTGCTTCGGACCCAGTCTGCTCAGAGGGGTGGAGATGGGTGGTGATGAAGTGACACTGGCACCTCAGATCAATGACCTTGTTAAGACAATGATCATCCATCATGAGAGCATTTTCCCTGGGCCTTCAGAACTCCCGGGCCCTGTCTATGAGAAATGCATGACTCTAGAGCAGGAGTACTGTGAACCTATAACAGAAGAGGGCGAGGGAGACACTGAACATCTCCCCAGTGAAGATGAGTGGGAGGCTGTGGCCATGTTTGATTATGTTGCACGCTCTGCAGCCGAGCTGTCGTTCAAGCAGGGTGACCACCTCCTACTACACAGCAAGGCCTCTGCTGATTGGTGGAGAGGGGAAGTAGGAGGAGTAAAAGGCCTGATCCCCCATAAATACATCAGTGTGGTAGAAGGGTGAGAAATAACTTCACTATAAACTGGATGAACTTCCTTCAAACATTTCGTGGATATTACTATTAGAGTAGCTCTGTTTTAAAACTTAGTGAAGGTTTTCTTCACacaatgtttatgtatatatttttatatatgtatacacacacacacacacacactgggtgAAATAATCTGTTACACTCAATATACTCAGTAATGAATTTTGCCTCTATGGACAACTCATTAGGTTTTGCAACAGAGCTAATGAGTACAATTTGCTAACCAAAACAGCT

Function

symbol description
srgap1a Predicted to be involved in negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human SRGAP1 (SLIT-ROBO Rho GTPase activating protein 1).
srgap1 Predicted to enable small GTPase binding activity. Predicted to be involved in negative regulation of cell migration. Predicted to act upstream of or within Rho protein signal transduction and cell migration. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Implicated in thyroid gland papillary carcinoma.

NR:

description
SLIT-ROBO Rho GTPase-activating protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264390.1 True 2554 mRNA 0.48 19 22583917 22622188

Neighbor

gene id symbol gene type direction distance location
LOC122362804 cmip,LOC107684659,LOC106560887,LOC106573687 coding upstream 59745 22498257 ~ 22524172 (+)
si:ch211-260p9.3 LOC107587040,LOC107666218 coding upstream 116658 22452446 ~ 22467259 (+)
LOC122362770 cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015 coding upstream 162671 22416782 ~ 22421246 (+)
LOC122363070 mical3a,LOC107559327,LOC107673136,LOC107672585,LOC108414616 coding upstream 184681 22374588 ~ 22399236 (+)
LOC122362522 LOC107670367,LOC107559271,LOC107673148,LOC107738440,LOC556054,LOC108414180,LOC108264794,LOC101481124 coding upstream 321948 22241472 ~ 22261969 (+)
LOC122362983 hipk2,LOC107722467,LOC107568633,LOC107738404 coding downstream 936 22623124 ~ 22636865 (+)
tmtc2b LOC107673141,LOC107722480,LOC107670376,LOC107738412,LOC107587029,LOC108414015 coding downstream 46009 22668197 ~ 22762542 (+)
bicd1a bicd1,LOC107722484,LOC107738411,LOC107587026 coding downstream 195169 22817357 ~ 22849043 (+)
fgd4a LOC107722468,LOC107670369,LOC107587027,LOC107684651,LOC107738409 coding downstream 227738 22849926 ~ 22889500 (+)
tbxas1 tbxas1,LOC107722474,LOC107684653,LOC107587020,LOC107738402,LOC107559817 coding downstream 458839 23081027 ~ 23140905 (+)
LOC122362810 NA non-coding upstream 20713 22560391 ~ 22563204 (+)
G128385 NA non-coding upstream 32303 22550445 ~ 22551614 (+)
G128379 NA non-coding upstream 40384 22536775 ~ 22543533 (+)
LOC122362809 NA non-coding upstream 44022 22538382 ~ 22539895 (+)
G128377 NA non-coding upstream 48493 22534466 ~ 22535424 (+)
G128431 NA non-coding downstream 319394 22941582 ~ 22944126 (+)
G128451 LOC107722467,LOC107568633,LOC107587022,LOC107738404 non-coding downstream 371910 22994098 ~ 22994341 (+)
G128453 NA non-coding downstream 373563 22995751 ~ 22996031 (+)
G128454 NA non-coding downstream 375576 22997764 ~ 23001633 (+)
G128458 NA non-coding downstream 380247 23002435 ~ 23002655 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 145238 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 171960 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 1942858 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 1983398 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 2027290 20551148 ~ 20556627 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 834912 23457100 ~ 23736848 (+)
G128858 NA other downstream 1827577 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 1961657 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 2672555 25294743 ~ 25309740 (+)
mt2 NA other downstream 2724204 25346392 ~ 25348594 (+)

Expression


Co-expression Network