rnf141 (rnf141,LOC107686251,LOC107730548,LOC107672299,LOC107740332)


Basic Information

Item Value
gene id rnf141
gene name rnf141,LOC107686251,LOC107730548,LOC107672299,LOC107740332
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25009287 ~ 25013620 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264439.1
TGGAAGTATTAAGGTTCAAAACATTTTACCGTCGAGCGTGCCCGTGACATCATCAACCTGCGTCAAGGTTTTCTTGTTATCATCTTACTTGTCATCTCGAATATTTGCTTGGATAAAACACATGCCAGCAGAGCCTCCAGCAGTGAATGAGGTCTAGAGTTGTTTTGGAGCAACCCTCCATCTGGAGCCAAGATGGGCCAGCAGCTTTCTGGCCAGGCAGTGACCAGACTCCCTGAGAAACTGATCAAACATGTGGGGCTAGTGCGCGACAGTGGCTACCTTACCTATGATGAGTTCTTGGGTCGTGTGGCAGAGCTCAATGATGTAACTGCTAAACTAGCCTCTGGCCAAAAGAAACATCTGTTGTTTGAAGTACAGCCGGGATCTGATGCAACGGCATTATGGAAGGTTGCTGTGAGAATAGTGTGCACCAAGATTAACAAGGAGGATGGAATGGTAGAGGCCTCTCGTATTATGAATCTGTACCAGTTTATCCAGCTCTACAAAGACATCACCAGCCAGGCAGCTGAAGTGTTTTGTTCAGAGGCTGCAGCAGAGGGATCCTCCGGACCGCTGTCATCAGAAGACACCTGCCAGGCCAGCATGTGGATGGGCAGGGTCAAACAGTTGACTGATGAGGAAGAATGCTGCATCTGCATGGATGGGAAAGCAGACCTTATTCTGCCCTGTGCTCACAGTTTCTGTCAGAAGTGTATTGACAAGTGGAGCGGTCAGAGCCGAAACTGCCCCGTCTGCCGGATTCAGGTGACTGCCGCTAATGAATCATGGGTCATGTCAGATGCTCCCACAGAGGAAGATATAGCTGGGTACATTCTCAACCTAGCGGATGAAGCCGGACACCCACACAGACCTTAAAATGAAGCACTGTGCCACTGACATATTCACTGTCTCCCCATAACAGATGACCTTctttaaacagttatttcatAGGGTGACTGTGGGTATTTGTTGCACTATATAGTGTCACTCACTGAAGGCAATAACTGctgagtttttgactttttaatatACTATTTTTAGGTTAATGCATCATATTATAACACCTGATCAATTCATAGACGTGACTGTGAACTGTATGTTGGTAAATGCTAAACAAGATGTAGCTGTGAAACAACTTTATTTCCTTGTTGCACTTGCCGTCTTATCTCGTTTGTGAAGTAATTGCACTTAAGTGCGTTTGTTCCGTAAAGGCCTTGTAATACCTGAATAAGCGTCACAGTGTCAGCATGTGCAACGATTTAGTATTGATGCTGTAATTCAGTCACACATGATTCAGTGACATTAACTGTACAGTTGATGTGCATTTATAATCTTAGGTTTAACAGAACAACTATAGTGATCTGTTTGACTTGGACTTCTTATCTGTATGCAAGTTGGATGAAATGTTAATTATAGGGCATGACTCTCATAACATTCATTATGAAACATAATAAGGATGGATTAACATTTGGGATAATTTGCTTGTTTTCCTTAGTTGCAAATGAAAGCTTTATTTTACAGGGCATCATATTATAGGTTAGTcacctttttatatatttgttttctggTTTGAAATCCTAGACTTTTCGTTCCGCACTTTGTTTGAGAGAGACTGTGAATTTGTGGGCTTGGGGAATTCacttgtattataaataatatgtatagATCAAACTTTATATGTAAATCTAAATATGCGTGGCAGTTTATTAAGATTTAATCTAGTTTATTAAGATCCACTAAtctagttttaaaaatgtgtttatttctgcaATATTCTCATGTTTATAGAGGTAAGACTGAATGGTTAATGATTTATTGGAGAAAATGACACTAGTTGCTGTTTTCTATTGTGAGAATGTTCTTTCAAAGGAGAGTTCTTTTAATTATGGACTGAACTGATATTTGTTGTTCTCTTTTCTTGTATAAATATcgaataataaagtaaattgcatattt
>XM_043264440.1
CAACCTGCGTCAAGGTTTTCTTGTTATCATCTTACTTGTCATCTCGAATATTTGCTTGGATAAAACACATGCCAGCAGCATTCTCTCTTATCTAGAGCCTCCAGCAGTGAATGAGGTCTAGAGTTGTTTTGGAGCAACCCTCCATCTGGAGCCAAGATGGGCCAGCAGCTTTCTGGCCAGGCAGTGACCAGACTCCCTGAGAAACTGATCAAACATGTGGGGCTAGTGCGCGACAGTGGCTACCTTACCTATGATGAGTTCTTGGGTCGTGTGGCAGAGCTCAATGATGTAACTGCTAAACTAGCCTCTGGCCAAAAGAAACATCTGTTGTTTGAAGTACAGCCGGGATCTGATGCAACGGCATTATGGAAGGTTGCTGTGAGAATAGTGTGCACCAAGATTAACAAGGAGGATGGAATGGTAGAGGCCTCTCGTATTATGAATCTGTACCAGTTTATCCAGCTCTACAAAGACATCACCAGCCAGGCAGCTGAAGTGTTTTGTTCAGAGGCTGCAGCAGAGGGATCCTCCGGACCGCTGTCATCAGAAGACACCTGCCAGGCCAGCATGTGGATGGGCAGGGTCAAACAGTTGACTGATGAGGAAGAATGCTGCATCTGCATGGATGGGAAAGCAGACCTTATTCTGCCCTGTGCTCACAGTTTCTGTCAGAAGTGTATTGACAAGTGGAGCGGTCAGAGCCGAAACTGCCCCGTCTGCCGGATTCAGGTGACTGCCGCTAATGAATCATGGGTCATGTCAGATGCTCCCACAGAGGAAGATATAGCTGGGTACATTCTCAACCTAGCGGATGAAGCCGGACACCCACACAGACCTTAAAATGAAGCACTGTGCCACTGACATATTCACTGTCTCCCCATAACAGATGACCTTctttaaacagttatttcatAGGGTGACTGTGGGTATTTGTTGCACTATATAGTGTCACTCACTGAAGGCAATAACTGctgagtttttgactttttaatatACTATTTTTAGGTTAATGCATCATATTATAACACCTGATCAATTCATAGACGTGACTGTGAACTGTATGTTGGTAAATGCTAAACAAGATGTAGCTGTGAAACAACTTTATTTCCTTGTTGCACTTGCCGTCTTATCTCGTTTGTGAAGTAATTGCACTTAAGTGCGTTTGTTCCGTAAAGGCCTTGTAATACCTGAATAAGCGTCACAGTGTCAGCATGTGCAACGATTTAGTATTGATGCTGTAATTCAGTCACACATGATTCAGTGACATTAACTGTACAGTTGATGTGCATTTATAATCTTAGGTTTAACAGAACAACTATAGTGATCTGTTTGACTTGGACTTCTTATCTGTATGCAAGTTGGATGAAATGTTAATTATAGGGCATGACTCTCATAACATTCATTATGAAACATAATAAGGATGGATTAACATTTGGGATAATTTGCTTGTTTTCCTTAGTTGCAAATGAAAGCTTTATTTTACAGGGCATCATATTATAGGTTAGTcacctttttatatatttgttttctggTTTGAAATCCTAGACTTTTCGTTCCGCACTTTGTTTGAGAGAGACTGTGAATTTGTGGGCTTGGGGAATTCacttgtattataaataatatgtatagATCAAACTTTATATGTAAATCTAAATATGCGTGGCAGTTTATTAAGATTTAATCTAGTTTATTAAGATCCACTAAtctagttttaaaaatgtgtttatttctgcaATATTCTCATGTTTATAGAGGTAAGACTGAATGGTTAATGATTTATTGGAGAAAATGACACTAGTTGCTGTTTTCTATTGTGAGAATGTTCTTTCAAAGGAGAGTTCTTTTAATTATGGACTGAACTGATATTTGTTGTTCTCTTTTCTTGTATAAATATcgaataataaagtaaattgcatattt

Function

symbol description
rnf141 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein autoubiquitination. Orthologous to human RNF141 (ring finger protein 141).

NR:

description
PREDICTED: RING finger protein 141-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264439.1 True 1956 mRNA 0.40 6 25009287 25013620
XM_043264440.1 False 1920 mRNA 0.40 6 25009340 25013620

Neighbor

gene id symbol gene type direction distance location
lyve1b NA coding upstream 823 25006079 ~ 25008464 (+)
eif4g2b eif4g2b,LOC107730533,LOC107569652,LOC107672256 coding upstream 10017 24990583 ~ 24999270 (+)
LOC122323238 NA coding upstream 13337 24995771 ~ 24995950 (+)
nts nts coding upstream 169131 24836247 ~ 24840156 (+)
alx1 alx1,LOC107672210,LOC107740463 coding upstream 208184 24795815 ~ 24801103 (+)
c18h11orf16 LOC107740346,LOC107672206,LOC107686328,LOC107750774,LOC107583884 coding downstream 76575 25090195 ~ 25095673 (+)
si:ch211-242e8.1 LOC107751619,LOC107569663,LOC107583802 coding downstream 85762 25099382 ~ 25103751 (+)
si:ch211-218c6.8 LOC107709518,LOC107686257 coding downstream 93495 25107115 ~ 25108935 (+)
chtf8 chtf8,LOC107569647,LOC107583916 coding downstream 109701 25123321 ~ 25124789 (+)
trhr2 trhr2,LOC107686265,LOC107738778,LOC107549620,LOC107740321,LOC107583797,LOC107672195 coding downstream 163312 25176932 ~ 25187744 (+)
G129127 NA non-coding upstream 8357 25000730 ~ 25000930 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding upstream 153056 24839062 ~ 24856231 (+)
LOC122362654 NA non-coding upstream 272275 24735187 ~ 24737012 (+)
G129038 NA non-coding upstream 280308 24664451 ~ 24728979 (+)
G129125 NA non-coding downstream 130 25013750 ~ 25016984 (+)
LOC122362644 NA non-coding downstream 20498 25034118 ~ 25049605 (+)
G129134 NA non-coding downstream 29468 25043088 ~ 25043820 (+)
G129135 NA non-coding downstream 49834 25063454 ~ 25141859 (+)
G129246 NA non-coding downstream 274523 25288143 ~ 25288537 (+)
LOC122323037 NA other upstream 420950 24583845 ~ 24588337 (+)
G128858 NA other upstream 551727 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1272439 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2570608 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2597330 22400944 ~ 22411957 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 281123 25294743 ~ 25309740 (+)
mt2 NA other downstream 332772 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 907647 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 938710 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 1215474 26229094 ~ 26332010 (+)

Expression


Co-expression Network