si:ch211-216l23.2 (LOC107549641,LOC107740307,LOC107583785,LOC107672316)


Basic Information

Item Value
gene id si:ch211-216l23.2
gene name LOC107549641,LOC107740307,LOC107583785,LOC107672316
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25457998 ~ 25464103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264491.1
TCAAGAAATACACTTGTTCTTTGAAAGGAAGTCAGATCGAGTGTGTTGCAAGTGTTTTGCAGGCATCTTTGAGCGTAAATCGCTATTATCCATAATTGTTTAAATCTGAACGAGTCTCAGTATGCACTGATCTCGCCAGAAATGAAATAACGTATCAGCAAATTCATCACGATTCACAGAGCAGCAGGACTGCAACCGAGCATCTGCGCAGAAGAAACACGATGTCGTCGTGGTCGAAGAAAGCTGGGGGCAGACGACCACCACCAAAACACAGCGGAGGAAGTGTCTCAAAGCCTCCCAGACCTTTTCGAAGAACGCCCTATCCGATGAGGGAGGACAGAAAAGATGATCATCCAGAATCTGAGAGCTTTGAGAGCTTAGATGAAGGGATTGACTACTCTGGCACTGCAGACTATGAGCTTTCCCCTCATCAGTCAGCCGCCGTTTCACCTGAAGAATACGAGGCAACGGTTCAACGCAATGCTGTATACGAGAGGTTCTTCCAGCAACTGCACGGAGACGCTGCTCGACAGCCCGCGGACTGTGTTGTCCTGTCAGTGAACAACCAGAACGTGGATTACCCCAAATCGATAGGCCAGTGTTTGCAGGAACGTGGCCTCTCGGTGGAAATGCTTTACCTGCAGGTGGAATCAGGCCTGACGCGGGCCCTCCAAGATGTCCGCTCCGACGGTTCCCCCTTATGTATTCTCGTCGAGCAGACTAATGTAACACTCTCCTCGTGCACAGTAATCATATTTTCAGAGTCCCTCAAAATTCATCGAAATATGCCCAAAGAACAGGCCATGGAGTTTGTGTTGGTGGAGTTCAGGCGCTTGAGCGGTTCGCGGCGGGTGCTGGACCCCACGGAGGCTGCGGCACGGGCGGCTGAGCTGACGGAGGACTACCTGGAGCGTAGCAAGCTGGAGCGCCACACTGTTCCCTCTGCCACCCGCCACCTGCTCTTTCTCCTGGCCGAAGGTTTGCACCTGTACCCAGAGGAACTCAACACACTGACAGAGTATCTTCAAAACCGCCAAGACCATCTGCAAGTAACTTCTGTAGAGGTGGGCACTGATGTTGCTCCTGTGATAAACAGCCTCCCTCCAGGGTTAGGAAAACCCCCACCACTTCTGCCTGCTGGTTCTGGACCACCACCAAGAGAGCAGACAAACCCACCCTCAGGGTCTGGAGATGCACCCCCAGGACATCACAGGGGATTGcaagGTTCATATCCCAAGACGAAACCACCTCCTTTGCTTTCGATGCAAAATCTAAAGCCACCTTCCCACAGATCAACTGCCCCCCATAGTCTTCTACCCTCTCGGGCCTCTACGGTGTCACATGGTTCTTCATTTAGTCCCCCATCCAGAGGGCCAGCAACCCCTCATagtgttgacaagccacaaccTCTGCTAGGCTCAGCACCTACACATGGGCCATCCTCCACCCGTACCCCTCTGCTCGATCGTGGCCCTCTTCTTGACCGTGCCCCTCTGCTTGAAACGCCTCTTGGTTTCCCGTCCCCTAGAGGACTGTTGCAGCATCCGGGGTCTCATTCGTTACGAGGGCCACCGTTGATATGTGGACCACCTCCGCAGAATGGACCCCGGGGTCCTAGAGCACCACCACCTTCACTCAGGAGCCTTCATATGGGAGCCCCAACAGGTCCTCGCCCCCCACCACGACGCCTGCTCCCTTGATTCTCTCGGGACACCTGATTAAATCATAAGCCAGAATTGCCATGTGGGACACTTGTTAACATTTTGgactgttttatgtttttatatttgatataaatttgacttctgtgttttctttcagGATCCTGAGATGTTTAAAGATGTACTGGTGTGGAAAAAGCCTCAGTTGTGTTCTCTTTATTTCCACAGGTGTAAGCtaattttaagaataaatatGGACATTGTCAGTGGCA
>XM_043264493.1
TCAAGAAATACACTTGTTCTTTGAAAGGAAGTCAGATCGAGTGTGTTGCAAGTGTTTTGCAGGCATCTTTGAGCGTAAATCGCTATTATCCATAATTGTTTAAATCTGAACGAGTCTCAGTATGCACTGATCTCGCCAGAAATGAAATAACGTATCAGCAAATTCATCACGATTCACAGAGCAGCAGGACTGCAACCGAGCATCTGCGCAGAAGAAACACGATGTCGTCGTGGTCGAAGAAAGCTGGGGGCAGACGACCACCACCAAAACACAGCGGAGGAAGTGTCTCAAAGCCTCCCAGACCTTTTCGAAGAACGCCCTATCCGATGAGGGAGGACAGAAAAGATGATCATCCAGAATCTGAGAGCTTTGAGAGCTTAGATGAAGGGATTGACTACTCTGGCACTGCAGACTATGAGCTTTCCCCTCATCAGTCAGCCGCCGTTTCACCTGAAGAATACGAGGCAACGGTTCAACGCAATGCTGTATACGAGAGGTTCTTCCAGCAACTGCACGGAGACGCTGCTCGACAGCCCGCGGACTGTGTTGTCCTGTCAGTGAACAACCAGAACGTGGATTACCCCAAATCGATAGGCCAGTGTTTGCAGGAACGTGGCCTCTCGGTGGAAATGCTTTACCTGCAGGTGGAATCAGGCCTGACGCGGGCCCTCCAAGATGTCCGCTCCGACGGTTCCCCCTTATGTATTCTCGTCGAGCAGACTAATGTAACACTCTCCTCGTGCACAGTAATCATATTTTCAGAGTCCCTCAAAATTCATCGAAATATGCCCAAAGAACAGGCCATGGAGTTTGTGTTGGTGGAGTTCAGGCGCTTGAGCGGTTCGCGGCGGGTGCTGGACCCCACGGAGGCTGCGGCACGGGCGGCTGAGCTGACGGAGGACTACCTGGAGCGTAGCAAGCTGGAGCGCCACACTGTTCCCTCTGCCACCCGCCACCTGCTCTTTCTCCTGGCCGAAGGTTTGCACCTGTACCCAGAGGAACTCAACACACTGACAGAGTATCTTCAAAACCGCCAAGACCATCTGCAAGTAACTTCTGTAGAGGTGGGCACTGATGTTGCTCCTGTGATAAACAGCCTCCCTCCAGGGTTAGGAAAACCCCCACCACTTCTGCCTGCTGGTTCTGGACCACCACCAAGAGAGCAGACAAACCCACCCTCAGGGTCTGGAGATGCACCCCCAGGACATCACAGGGGATTGcaagGTTCATATCCCAAGACGAAACCACCTCCTTTGCTTTCGATGCAAAATCTAAAGCCACCTTCCCACAGATCAACTGCCCCCCATAGTCTTCTACCCTCTCGGGCCTCTACGGTGTCACATGGTTCTTCATTTAGTCCCCCATCCAGAGGGCCAGCAACCCCTCATagtgttgacaagccacaaccTCTGCTAGGCTCAGCACCTACACATGGGCCATCCTCCACCCGTACCCCTCTGCTCGATCGTGGCCCTCTTCTTGACCGTGCCCCTCTGCTTGAAACGCCTCTTGGTTTCCCGTCCCCTAGAGGACTGTTGCAGCATCCGGGGTCTCATTCGTTACGAGGGCCACCGTTGATATGTGGACCACCTCCGCAGAATGGACCCCGGGGTCCTAGAGCACCACCACCTTCACTCAGGAGCCTTCATATGGGAGCCCCAACAGGTCCTCGCCCCCCACCACGACGCCTGCTCCCTTGATTCTCTCGGGACACCTGATTAAATCATAAGCCAGAATTGCCATGATCCTGAGATGTTTAAAGATGTACTGGTGTGGAAAAAGCCTCAGTTGTGTTCTCTTTATTTCCACAGGTGTAAGCtaattttaagaataaatatGGACATTGTCAGTGGCA
>XM_043264494.1
TCAAGAAATACACTTGTTCTTTGAAAGGAAGTCAGATCGAGTGTGTTGCAAGTGTTTTGCAGGCATCTTTGAGCGTAAATCGCTATTATCCATAATTGTTTAAATCTGAACGAGTCTCAGTATGCACTGATCTCGCCAGAAATGAAATAACGTATCAGCAAATTCATCACGATTCACAGAGCAGCAGGACTGCAACCGAGCATCTGCGCAGGTAATGTTTGTTACGCCGTTCGTTTAGAAGAAACACGATGTCGTCGTGGTCGAAGAAAGCTGGGGGCAGACGACCACCACCAAAACACAGCGGAGGAAGTGTCTCAAAGCCTCCCAGACCTTTTCGAAGAACGCCCTATCCGATGAGGGAGGACAGAAAAGATGATCATCCAGAATCTGAGAGCTTTGAGAGCTTAGATGAAGGGATTGACTACTCTGGCACTGCAGACTATGAGCTTTCCCCTCATCAGTCAGCCGCCGTTTCACCTGAAGAATACGAGGCAACGGTTCAACGCAATGCTGTATACGAGAGGTTCTTCCAGCAACTGCACGGAGACGCTGCTCGACAGCCCGCGGACTGTGTTGTCCTGTCAGTGAACAACCAGAACGTGGATTACCCCAAATCGATAGGCCAGTGTTTGCAGGAACGTGGCCTCTCGGTGGAAATGCTTTACCTGCAGGTGGAATCAGGCCTGACGCGGGCCCTCCAAGATGTCCGCTCCGACGGTTCCCCCTTATGTATTCTCGTCGAGCAGACTAATGTAACACTCTCCTCGTGCACAGTAATCATATTTTCAGAGTCCCTCAAAATTCATCGAAATATGCCCAAAGAACAGGCCATGGAGTTTGTGTTGGTGGAGTTCAGGCGCTTGAGCGGTTCGCGGCGGGTGCTGGACCCCACGGAGGCTGCGGCACGGGCGGCTGAGCTGACGGAGGACTACCTGGAGCGTAGCAAGCTGGAGCGCCACACTGTTCCCTCTGCCACCCGCCACCTGCTCTTTCTCCTGGCCGAAGGTTTGCACCTGTACCCAGAGGAACTCAACACACTGACAGAGTATCTTCAAAACCGCCAAGACCATCTGCAAGTAACTTCTGTAGAGGTGGGCACTGATGTTGCTCCTGTGATAAACAGCCTCCCTCCAGGGTTAGGAAAACCCCCACCACTTCTGCCTGCTGGTTCTGGACCACCACCAAGAGAGCAGACAAACCCACCCTCAGGGTCTGGAGATGCACCCCCAGGACATCACAGGGGATTGcaagGTTCATATCCCAAGACGAAACCACCTCCTTTGCTTTCGATGCAAAATCTAAAGCCACCTTCCCACAGATCAACTGCCCCCCATAGTCTTCTACCCTCTCGGGCCTCTACGGTGTCACATGGTTCTTCATTTAGTCCCCCATCCAGAGGGCCAGCAACCCCTCATagtgttgacaagccacaaccTCTGCTAGGCTCAGCACCTACACATGGGCCATCCTCCACCCGTACCCCTCTGCTCGATCGTGGCCCTCTTCTTGACCGTGCCCCTCTGCTTGAAACGCCTCTTGGTTTCCCGTCCCCTAGAGGACTGTTGCAGCATCCGGGGTCTCATTCGTTACGAGGGCCACCGTTGATATGTGGACCACCTCCGCAGAATGGACCCCGGGGTCCTAGAGCACCACCACCTTCACTCAGGAGCCTTCATATGGGAGCCCCAACAGGTCCTCGCCCCCCACCACGACGCCTGCTCCCTTGATTCTCTCGGGACACCTGATTAAATCATAAGCCAGAATTGCCATGTGGGACACTTGTTAACATTTTGgactgttttatgtttttatatttgatataaatttgacttctgtgttttctttcagGATCCTGAGATGTTTAAAGATGTACTGGTGTGGAAAAAGCCTCAGTTGTGTTCTCTTTATTTCCACAGGTGTAAGCtaattttaagaataaatatGGACATTGTCAGTGGCA
>XM_043264495.1
TTAGAAGAAACACGATGTCGTCGTGGTCGAAGAAAGCTGGGGGCAGACGACCACCACCAAAACACAGCGGAGGAAGTGTCTCAAAGCCTCCCAGACCTTTTCGAAGAACGCCCTATCCGATGAGGGAGGACAGAAAAGATGATCATCCAGAATCTGAGAGCCGTTTCACCTGAAGAATACGAGGCAACGGTTCAACGCAATGCTGTATACGAGAGGTTCTTCCAGCAACTGCACGGAGACGCTGCTCGACAGCCCGCGGACTGTGTTGTCCTGTCAGTGAACAACCAGAACGTGGATTACCCCAAATCGATAGGCCAGTGTTTGCAGGAACGTGGCCTCTCGGTGGAAATGCTTTACCTGCAGGTGGAATCAGGCCTGACGCGGGCCCTCCAAGATGTCCGCTCCGACGGTTCCCCCTTATGTATTCTCGTCGAGCAGACTAATGTAACACTCTCCTCGTGCACAGTAATCATATTTTCAGAGTCCCTCAAAATTCATCGAAATATGCCCAAAGAACAGGCCATGGAGTTTGTGTTGGTGGAGTTCAGGCGCTTGAGCGGTTCGCGGCGGGTGCTGGACCCCACGGAGGCTGCGGCACGGGCGGCTGAGCTGACGGAGGACTACCTGGAGCGTAGCAAGCTGGAGCGCCACACTGTTCCCTCTGCCACCCGCCACCTGCTCTTTCTCCTGGCCGAAGGTTTGCACCTGTACCCAGAGGAACTCAACACACTGACAGAGTATCTTCAAAACCGCCAAGACCATCTGCAAGTAACTTCTGTAGAGGTGGGCACTGATGTTGCTCCTGTGATAAACAGCCTCCCTCCAGGGTTAGGAAAACCCCCACCACTTCTGCCTGCTGGTTCTGGACCACCACCAAGAGAGCAGACAAACCCACCCTCAGGGTCTGGAGATGCACCCCCAGGACATCACAGGGGATTGcaagGTTCATATCCCAAGACGAAACCACCTCCTTTGCTTTCGATGCAAAATCTAAAGCCACCTTCCCACAGATCAACTGCCCCCCATAGTCTTCTACCCTCTCGGGCCTCTACGGTGTCACATGGTTCTTCATTTAGTCCCCCATCCAGAGGGCCAGCAACCCCTCATagtgttgacaagccacaaccTCTGCTAGGCTCAGCACCTACACATGGGCCATCCTCCACCCGTACCCCTCTGCTCGATCGTGGCCCTCTTCTTGACCGTGCCCCTCTGCTTGAAACGCCTCTTGGTTTCCCGTCCCCTAGAGGACTGTTGCAGCATCCGGGGTCTCATTCGTTACGAGGGCCACCGTTGATATGTGGACCACCTCCGCAGAATGGACCCCGGGGTCCTAGAGCACCACCACCTTCACTCAGGAGCCTTCATATGGGAGCCCCAACAGGTCCTCGCCCCCCACCACGACGCCTGCTCCCTTGATTCTCTCGGGACACCTGATTAAATCATAAGCCAGAATTGCCATGTGGGACACTTGTTAACATTTTGgactgttttatgtttttatatttgatataaatttgacttctgtgttttctttcagGATCCTGAGATGTTTAAAGATGTACTGGTGTGGAAAAAGCCTCAGTTGTGTTCTCTTTATTTCCACAGGTGTAAGCtaattttaagaataaatatGGACATTGTCAGTGGCA

Function

NR:

description
nuclear receptor coactivator 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264491.1 False 1933 mRNA 0.52 10 25457998 25464103
XM_043264493.1 False 1855 mRNA 0.53 11 25457998 25464103
XM_043264494.1 True 1960 mRNA 0.51 10 25457998 25464103
XM_043264495.1 False 1652 mRNA 0.53 8 25458425 25464103

Neighbor

gene id symbol gene type direction distance location
rspry1 rspry1,LOC107583786,LOC107672266 coding upstream 711 25445589 ~ 25457287 (+)
cpne2 cpne2,LOC107583787,LOC107740309,LOC107672324 coding upstream 21225 25417863 ~ 25436773 (+)
nlrc5 nlrc5,LOC107580006 coding upstream 44741 25394882 ~ 25413257 (+)
LOC122362468 cetp coding upstream 63757 25389034 ~ 25394241 (+)
herpud1 herpud1,LOC107686272,LOC107549637,LOC107740310,LOC107672290 coding upstream 70138 25381708 ~ 25387860 (+)
znf423 si:ch211-216l23.1,LOC107738741,LOC107583782,LOC107740334,LOC107672235,LOC107549642 coding downstream 6971 25471074 ~ 25612128 (+)
si:ch211-212o1.2 si:ch211-212o1.2,tmem189,LOC107738740,LOC107740306,LOC107672277,LOC107583780,LOC108264382,LOC106560866 coding downstream 150110 25614213 ~ 25639371 (+)
cbln1 cbln1,LOC107549644,LOC107583779,LOC106573707 coding downstream 192541 25656644 ~ 25662430 (+)
n4bp1 n4bp1,LOC107549646,LOC107738738,LOC107743359,LOC107583777 coding downstream 308032 25772135 ~ 25782486 (+)
siah1 siah1,LOC107742888,LOC107549647,LOC106573709 coding downstream 323231 25787334 ~ 25803910 (+)
G129270 fam192a non-coding upstream 15557 25440048 ~ 25442441 (+)
G129262 NA non-coding upstream 108960 25348756 ~ 25349038 (+)
G129246 NA non-coding upstream 169461 25288143 ~ 25288537 (+)
G129135 NA non-coding upstream 316139 25063454 ~ 25141859 (+)
G129134 NA non-coding upstream 414178 25043088 ~ 25043820 (+)
G129360 NA non-coding downstream 198394 25662497 ~ 25663585 (+)
G129368 NA non-coding downstream 210968 25675071 ~ 25675310 (+)
G129370 NA non-coding downstream 212454 25676557 ~ 25676861 (+)
G129435 NA non-coding downstream 502913 25967016 ~ 26221023 (+)
G129438 arih1,LOC105007423,LOC107738728,LOC107686289 non-coding downstream 692804 26156907 ~ 26158502 (+)
mt2 NA other upstream 109404 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 148258 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 869661 24583845 ~ 24588337 (+)
G128858 NA other upstream 1000438 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1721150 23457100 ~ 23736848 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 457164 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 488227 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 764991 26229094 ~ 26332010 (+)
G129468 cpt1b,LOC107710383,LOC107686536,LOC107599889,LOC107671150 other downstream 839784 26303887 ~ 26306806 (+)

Expression


Co-expression Network