trhr2 (trhr2,LOC107686265,LOC107738778,LOC107549620,LOC107740321,LOC107583797,LOC107672195)


Basic Information

Item Value
gene id trhr2
gene name trhr2,LOC107686265,LOC107738778,LOC107549620,LOC107740321,LOC107583797,LOC107672195
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25176932 ~ 25187744 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264600.1
TTTAAGAGTGCAGTTACTAGCGCTTCTGTACAAGATCACATTTTTTGCTCGTCATGTCAAATACTTCATATcagtgcattttgtttttcatctggGGTTTACAGCCGACACCGCACGAGAGCTGTTTCGGTTCCAAACTACAAGAATGATGTCTGAGTGATCAATTGGACGGACGCTTGCATTAacgtgggaaaaaaaattagcCTCTGGATTTGAATGCGATGCTTTTAATGGAAGGATACTGTTACAGAAGAAATAATGGGCTACGGTCAGCAGATGAACATCATTATGCTGTTGAAGCCAAGAAAATTAAACAACATACTTAATAAGAGAAAAGCACATCAATAAAAGCTGGAACTGAACGGgcagattttgttttcatattaaatCTTTTGAATATCAAACAGACTACGTTCAGCTTTTTTTCTTCGCCACCAATTTTGTTTCTGCCTGTTGCTTCACATCTTATATGTAAATACTCACATCGAGAGGATTAATCATGCAGGAAAATGTGAGTTCCAGAATGGACACCCCCACCAATATCTCCCTGGTGGGTTCTGGGGACGCTGTGTCCGAGTCCCTGGAGTATAAGACCGTATCTGTGTTCCTGGTGCTGCTGGTGTGTGGCGTGGGCATAGTGGGAAACATCATGGTCGTGCTGGTGGTTCTTACCACACGCCACATGCGTACACCCACTAACTGCTATCTGGTGAGCTTGGCCGTGGCGGACCTGATGGTTCTGGTGGCTGCGGGTTTGCCGAATATCTCAGAGAGCTTGATGGCCACCTGGGTGTATGGGCATGCTGGGTGCCTAGGCATCACCTACTTCCAGTACCTTGGTATTAATGCGTCTTCCTGTTCGATAACAGCCTTCACTGTTGAGAGATACATCGCTATATGTCACCCAATGAGGGCTCAAACGGTCTGTACGGTATCCCGAGCCAAGCGCATTATTGCTGGGGTGTGGGCTTTCACCTGTGTTTACTGCATGCTCTGGCTGTTCCTGGTGGATATCCAGGTGAACCCTGACGGCCGCGTTCAGTGCGGCTACCGTGTGTCTCGAGACCTCTACCTGCCCATCTACCTGATTGACTTCACCATCTTCTACGTGATCCCTCTGCTCCTGGCCATTGCTCTTTATGGTCTCATCGCCCGAATCCTTTACCTGAATCCTCTGCCCCACCCACCAGACTCAGGTACCATTACCGCCCCCACTCTCAGGAGGAGCTGCAAAGAACCAGCGGATGGCGGAAAAGCAGGTCGTCAAGGACGTCCAAAGAGTGCGCTTTCTTCACGGAAACAGGTCACTAAGATGCTCGCAGTGGTGGTTGTGCTCTTCGCCCTGTTGTGGATGCCGTACAGGACCCTGGTTCTCATTAACTCCTTCGTGAGCACGCCGTACCTGGATGCCTGGTTCCTGCTCTTCTGCAGAACCTGCATTTACGCAAACAGCGCAATCAACCCTGTCGTTTACAACCTGATGTCCCAGAAGTTTCGCTCGGCCTTCCGTGGGCTGTATCGCTGCCATAGAGAAGACATACACCAGCGGACGCTCTCTATGTTTCAGAGCGGATACAGCCTTGGAAGGGAACCCCGGCTTTGCAGCAACACCAACGGCACACCTAAGAAAATCGGTTCAGTCACTCCCGAGCAGAAACCAAACAAAGGCATGGAGCACAGCAAGGAAAATATAAACAAGCTAATTAGCGATGGCGTAAAAAATGAGATTGAGAAAAGCATCAAGAAAAACGTAGATGAATTGAAAAGCTCAGTTGACAAGGAGATGCCTACAGTGGAGAACGTGGACATGAGCAAGATTAATGATAATGGGAAAATAATGGAGGAAAGCGATAATACCACTCAGGATATTATCGCTGACACGAGCAACACAGAGCAGACACAGCTAGCCGCCGATGAACCCAAATCTACAGTGGGGGGAGACAAACAGTTAAATCACAGCATTGTATAGATTGCTCCactgcatactgtatatatttcattgAAGTGGCAGGGTTGATCGCTAGAGCTAGTTGTTCATTTTGAAGCCAGGTCTTGGAATTCAAAATTTGTATTTACAGGTGTCATCGTCACTCTTTAGTGGAGGTGGCAAGACTGGAGCCACTTTCTCCTCATAATTTACAAGTGGAACCATTTGGCTGTCAGCACCAGCATCACATGCCTCATAGAGCTAGAGCTTCAGCTAGGGCTGACTAATttgttacaaaacattattttgaagaaacatTTAACATCTCTTATTGTTGCTGCTTAAAATATAGACACTGAAACATCACctacacaattttaaaatccaaactcatttaaaaacaggCATCAAACACTTGCTGACTTTGTAAAGGGTTACTGAGGGAAAAACCTGGACAACATGAACTGAACAACTGAGGATCACACACCACCAGACtttcaagacattttgaagaaaacatttagaaacataTTTCTCATTGCTAGGAGATCAGCGAAATGAAAGCAATGCATGCTCTAAAATCAactcaaaatatcaaacatgatATGTTTGACATCCCTCGACAGAACTATTGATAATTCTCCAGACAGCAAAATCtgggaaattttttttgtgtattctaGCAAGttgtacaaattagccacccTGTAATATATGTATGATGTCTTATTCCAATGAAAAGCcttacaatgaaagtcaataggATCCAAAACAAAATTAGACCCAGCAGAATTTCATTTCAATATACAAGggagaaaaaaatctgcttccatataaataattacagatacaatgtaaattaattaattatttttaattgtatttattttacctcATATTTTTTCACCAAAATGTGAAACTCGATCTTCCAGTGACAAGACAAGCTTCTACAATCATTTAGTCCGCTTAAGCTCCGgttatttgttctgttttcatCCAATCAACAACTGATGGGTTTTCTGTTTTTCGATAAGCTGTTTCATTTAGATATACATCAAAATATGGATGAAAATATCTGTTATTACTTCCGTAACATTCCATATAGTCATACTTGAGCCTTCTCTAAAAGAAGCAAATTCTTtcagttgacccaaaaatgaactcCAGTCAAGTCAAAAAAGACATACACAAAACCGCAGGACTCCTTCACTGTCAAACCgctaactaaatatttaattaaaatctcaGCCTTTTAATAACCACGCAAGGCTATATCAGAATTTCGACTTGGATTTAATTAATTGTGCAGACTTAGCTCCAGGATGTGTCTTCTCTCAACACAAAACTTTTTTACCCACTTTGTGTCTTCAAACTCAGCGGAATGAGAAACAAACAAGCCTCATCCTGCTTTTAAAGCACAGACAAAGTTATCCcttaaaaacattcagaacacTACGGGGCATAAGatccatttaaaatgcttttgtcCGACAATAAGGCCCGCAGAATCATGACACACTTGTGTTTTTCCACAGCCAACATTTGCCATCACTGGATGAATTCCATAGTACGTGGAGATCTAATGCCTCACCATTTGTTCCAGCACAAATAAACAGAACCCGTTCTGTGTGCCCAGAGGTATGTCTGAGCTTTTTAGACCCCATTTACAATCAGTGGAAGATGAGCGAAGCCAGGCATCCATTTGTCAGGTGtagtt

Function

symbol description
trhr2 Predicted to enable thyrotropin-releasing hormone receptor activity. Predicted to be involved in phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
thyrotropin-releasing hormone receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264600.1 True 3644 mRNA 0.43 4 25176932 25187744

Neighbor

gene id symbol gene type direction distance location
chtf8 chtf8,LOC107569647,LOC107583916 coding upstream 52143 25123321 ~ 25124789 (+)
si:ch211-218c6.8 LOC107709518,LOC107686257 coding upstream 67997 25107115 ~ 25108935 (+)
si:ch211-242e8.1 LOC107751619,LOC107569663,LOC107583802 coding upstream 73181 25099382 ~ 25103751 (+)
c18h11orf16 LOC107740346,LOC107672206,LOC107686328,LOC107750774,LOC107583884 coding upstream 81259 25090195 ~ 25095673 (+)
rnf141 rnf141,LOC107686251,LOC107730548,LOC107672299,LOC107740332 coding upstream 163312 25009287 ~ 25013620 (+)
LOC122362888 LOC107686267,LOC107738755,LOC107738765 coding downstream 102258 25290002 ~ 25294615 (+)
phaf1 si:dkey-102f14.5,LOC107686270,LOC107738752,LOC107583793,LOC107549632,LOC107740317,LOC107672279 coding downstream 134912 25322656 ~ 25334005 (+)
nup93 nup93,LOC107549634,LOC107740311,LOC107583877 coding downstream 161737 25349481 ~ 25371467 (+)
slc12a3 slc12a3,LOC107740340,LOC107583876 coding downstream 183961 25371705 ~ 25381143 (+)
herpud1 herpud1,LOC107686272,LOC107549637,LOC107740310,LOC107672290 coding downstream 193964 25381708 ~ 25387860 (+)
G129135 NA non-coding upstream 35073 25063454 ~ 25141859 (+)
LOC122362644 NA non-coding upstream 127327 25034118 ~ 25049605 (+)
G129134 NA non-coding upstream 133112 25043088 ~ 25043820 (+)
G129125 NA non-coding upstream 159948 25013750 ~ 25016984 (+)
G129127 NA non-coding upstream 176002 25000730 ~ 25000930 (+)
G129246 NA non-coding downstream 100399 25288143 ~ 25288537 (+)
G129262 NA non-coding downstream 161012 25348756 ~ 25349038 (+)
G129270 fam192a non-coding downstream 252304 25440048 ~ 25442441 (+)
G129360 NA non-coding downstream 474753 25662497 ~ 25663585 (+)
G129368 NA non-coding downstream 487327 25675071 ~ 25675310 (+)
LOC122323037 NA other upstream 588595 24583845 ~ 24588337 (+)
G128858 NA other upstream 719372 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1440084 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2738253 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2764975 22400944 ~ 22411957 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 106999 25294743 ~ 25309740 (+)
mt2 NA other downstream 158648 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 733523 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 764586 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 1041350 26229094 ~ 26332010 (+)

Expression


Co-expression Network