arih1 (arih1,LOC107742882,LOC107672283,LOC108423892,LOC107549652,LOC107686289)


Basic Information

Item Value
gene id arih1
gene name arih1,LOC107742882,LOC107672283,LOC108423892,LOC107549652,LOC107686289
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25906919 ~ 25920975 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264798.1
CTTTAAGCGAGCctaacaactttattttaaaacacgtCTTGTTTTTTGTGTCACGCACATGACGTCACCCAGCGTCGGCCCGTGACGCTGCGTCTCTTTGTTGGCCCAGCAGCGGCGTCGCtccttctgttgttgttttctcagcTCCTAGAAAAACTGGAATGCTAGCAAGCTAAagtgttctgtttttttgttttgctccatctgccaaataatacacattaaacTTGTACCACTTGGCGCGTCACTACATTGAACGCAACCCAGTCATGGACTCAGACGAGGGTTACAATTACGAATTCGACGACGAGGAAGAGGAATGCAGCGAAGACAGCGGCGAAGAGGAGACCGCCGACGACACCCTGGAGCTCGGCGAGGTGGAGTTGGTTGATCCCGTTGTGGCCGGCGGAGAGCGAGACGACTGCGGGGAGACGGGAGGCAGCGGCCTCGGGCCTGGGCAGGATGAGGAAGACTACCGCTTTGAAGTGCTAACTGCCGAACAGATTCTGCAGCATATGGTGGAGTGTAAGGAGGTCAACGAGGTCATCCAGAATCCTGCTACAATCACTAGAATATTACTTAGTCATTTCAACTGGGACAAAGAAAAGCTGATGGAAAGGTACTTTGATGGTAACCTGGACAAGCTATTTTCAGAATGTCATGTTATAAACCCCAGCAAGAAGTCTCGGACACGCCTCATGAACACAAGATCGTCGGCACAGGACATGCCATGTCAGATCTGCTATCTCAACTATCCTAACTCGTACTTCACTGGTCTGGAATGTGGGCACAAGTTCTGCATGCAGTGCTGGGGTGATTATTTAACCACCAAAATCATAGAGGAAGGAATGGGACAGACCATTTCTTGTCCTGCTCATAGCTGTGATATTTTGGTGGATGACAACACAGTCATGCGACTGATTACAGATTCAAAAGTGAAGTTGAAGTACCAGCATTTAATAACCAATAGTTTTGTAGAGTGTAACCGACTGTTAAAATGGTGTCCAGCACCTGACTGTCATCATGTTGTCAAAGTACAGTACCCAGATGCCAAACCTGTACGGTGCAAGTGTGGTCGGCAGTTTTGcttCAACTGTGGAGAAAACTGGCACGATCCAGTGAAGTGTAAGTGGCTAAGGAAATGGATAAAGAAATGTGATGATGACAGTGAGACATCAAACTGGATTGCAGCAAATACAAAGGAATGTCCAAAATGCCACGTCACCATTGAGAAAGATGGTGGCTGCAACCACATGGTGTGCCGGAACCAGAACTGTAAAGCAGAATTCTGCTGGGTTTGCCTGGGGCCCTGGGAGCCACATGGTTCTGCTTGGTACAACTGTAATCGTTACAACGAGGATGATGCCAAGGCAGCCCGGGATGCTCAAGAGCGCTCCAGAGCAGCTCTGCAGAGGTACCTGTTCTACTGCAACCGCTACATGAACCACATGCAGAGCCTGCGCTTCGAGCACAAGCTGTACGCCCAGGTCAAACAGAAGATGGAGGAGATGCAGCAGCACAACATGTCATGGATCGAGGTGCAGTTTCTGAAGAAGGCCGTGGATGTGCTGTGCCAGTGCCGCTCCACGCTCATGTTCACCTACGTCTTTGCGTTCTACCTCAAGAAGAACAACCAGTCTATCATCTTCGAGAATAACCAGGCAGATCTGGAGAATGCTACAGAGGTTCTGTCTGGATACCTGGAACGAGACATCTCCCAAGATTCTCTGCAGGACATTAAGCAGAAAGTACAAGATAAATACAGATACTGTGAGAGCAGACGGAGAGTGCTGCTGCAACACGTACATGAAGGCTATGACAAAGACCTGTGGGAGTACATCGAGGATTGAGGCTACATCTCCACACCACAGACTCTCGGAGACAAACTCCACCCACTAGAGCGCTGATGCAATGACAACAGAGCAGCACAGACCTCTGCTGCCTCCTCCCTGGCAAACCGCCCTgcattgcataatttttttttccagatttttgtTTCAAGAAAAGCATAagagtaaattatatttaaatgaaaaagttagaatattaaaaataaaatattacatgttcAACAGTATTGTTAGCAGCGTGAAGCGCAAGACTGAGAAATCCAACAAAAAGGCGAAATATCTTTCTTTTGCTTGCATTGTGAGATCTTGCCCTCGGAAATCTTTTCCCtccttatcagttatgtttgtGGACGTGTTctgtttgactttattttatatactctttttttttttgtgtgtgtgtggaaaatgaactttgttttcaaaatggCTTTAATCATTTTGAACGTGTCTGGCGAGATCCGTGTGTGGGTTGCCGAATGTCGATTGGATGATTGTAAGGAGGCGACTTTTTGGCTTACAGACGTTAgtggaatagaaaaaaaaaacaccaaaaaaagagagagagagagagagagataaaatcggtatttttcaatttgtaaatatgcatatgcatggAAGTTAAAGAGTAAGAGTGGCATGtgtttgcatcatttttaaaagatatttatctttacagatattaaaaaaaaaaatgtatatttgctgTGTAGATTGAGTGTCTTTCCCTATCTTGGATCGCCCCTCTGAAGAGGTTTGGACTTGACACATGCTTGACGTAAACCGGCAGTCCGTGTCTCTCCCTCCGCTCCTCCCCTTTGCTCCACAAGGCTACATTCTGCCAAATCGAGCAGATCATGCCAAGGTGGCGCTTTTCTGCCTGCTAGGAGTCTTGTGAGAGCTTCTGGCTTTACGATTGGAGGAAATGGGGGTGGTTTAACGTTCGCTGCTTTTTTCCAAGAGttcaaacttttaaaacagCAGCGGTTTCCTCTGCTCTGCCTCCTTTGCTGTTATTCTGCTCCCTCCTCCTAGGTAGATTTAGTAACGTAATATGATTTTAAGAGTTATATGAATAATTTCTGAGAGCCAAACTGAGTGACATTCACTCATataacctttttatattttttctttttgtctctctgAAGTTCATTCTTCGACCCCGACCCCGGCTCGAGGTTCTTTCTCCGCCCGCCCAACATGCTTGTTGATGACATTGCAGCGATGGGCCTGTTGAGCTGCTTTCTTGACATCCGTTGTCAAGCGTTCCGACTGAGCCATTGACAAACAGGGTTAGGCATTTTCCACATGATCGATTCTTTTGCACACCGCAGAACTAGTAGTCGGAAGCCACCGTTATCTCTGCTGCGAGGTTCCATGCcgctttaattaattttgtgtaaaataatcaCGTTTGCACCTGGGATGGTTTCCAAAGGGCCGTTTTGAGTCATGATATAGTTTGCAGGGAATATGTGATGTAACCTTCGTACTGTGATGTTGCATTTGTGTACACTTTGTTCATGCAGAATTGTACAAATTGTGTGTGGACGCACCACGACCATCGTTGAAGCACTGAGACCCTGTCATCGGGGGTACAGGGGCGGGGGTTCTGGGATAGACACAGATGGGACAGTGGCGTTGCAGATCAAGTTGGCCTATTCAGACAACACCAAAGTGTCAATCTCAAACTGATGATTTCTTAACCCCCCCCCTCCTCACTTTCTGTTGGAAGTGTGACTCATTGtggcttttcatttttgattttcttttctacTTCAGATGTGCTCCATGAAAATAAATGTCCTGAAATGCAttcttcatttaattaatagtaTTCTCTTGTGTTTTTGCCTGTTAATCCTTTTGCTTTGTGTGCTGGGAAtgattgcaatttttttttttttatgtaagtctTTGTAATATGCCATGGATGAGTGCTGAGATGGTCTTCCAGGTATAGACATACATGCTTTGACTATTAAATGGGAATTGGAAATTTCTGCAAGAACATGAAATAGGAAAGTCTGTTTTGTAGGTTCCCGTGGTTTCTGTTACAATGGGACACGGAATGATCTACAAAAACATGGAATGGTTCTACTGCCCCTGTATGCAGCATAGTGTGTGTTTAACTGTCTCCTTCAGGCCACTTTGCTTCTCAGTTACGCCTATTTGATCATGTCTGCTAGTTCATGAGCATCCAAATTTAACATTCACGGTAATAAAAAGCAGCTACTCTCATTTTGTTGAGACATCCAAAAACTTTTAATACTTTTCTACATGTATCCTTTCTTTATgcgattaaattttttttttttttttgatttcttaTATACATAGTGTACAAATGTGTAAGAAATTAGTTGTTCGttttgaagaaaacaaatattaaagtgcAAAATGTTGCAAACATTGCTTTA

Function

symbol description
arih1 Predicted to enable ubiquitin conjugating enzyme binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in Lewy body and nuclear body. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human ARIH1 (ariadne RBR E3 ubiquitin protein ligase 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase ARIH1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11968 ARIH1; ariadne-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264798.1 True 4276 mRNA 0.44 15 25906919 25920975

Neighbor

gene id symbol gene type direction distance location
LOC122322950 LOC107549654,LOC107576747,LOC107672203,LOC107742895,LOC107686352 coding upstream 4004 25897542 ~ 25902915 (+)
trnal-cag_32 NA coding upstream 9414 25897423 ~ 25897505 (+)
st3gal2 st3gal2,LOC107742884,LOC107672232,LOC107686287 coding upstream 31187 25854441 ~ 25875732 (+)
siah1 siah1,LOC107742888,LOC107549647,LOC106573709 coding upstream 103009 25787334 ~ 25803910 (+)
n4bp1 n4bp1,LOC107549646,LOC107738738,LOC107743359,LOC107583777 coding upstream 124433 25772135 ~ 25782486 (+)
hacd3 hacd3,LOC107672296,LOC107738726,LOC107583769,LOC107742880,LOC107596982 coding downstream 19754 25940729 ~ 25943948 (+)
LOC122362626 LOC107672296,LOC107738726,LOC107742880,LOC107686290,LOC107596982,LOC107583769 coding downstream 270029 26191004 ~ 26196388 (+)
LOC122362692 LOC107719968,LOC107671151,LOC101886608 coding downstream 379941 26300916 ~ 26303177 (+)
LOC122323090 LOC107710382,LOC107686534,LOC107560047,LOC107719970,LOC107671152,LOC107599867 coding downstream 425037 26346012 ~ 26357471 (+)
G129370 NA non-coding upstream 230058 25676557 ~ 25676861 (+)
G129368 NA non-coding upstream 231609 25675071 ~ 25675310 (+)
G129360 NA non-coding upstream 243334 25662497 ~ 25663585 (+)
G129270 fam192a non-coding upstream 464478 25440048 ~ 25442441 (+)
G129262 NA non-coding upstream 557881 25348756 ~ 25349038 (+)
G129435 NA non-coding downstream 46041 25967016 ~ 26221023 (+)
G129438 arih1,LOC105007423,LOC107738728,LOC107686289 non-coding downstream 235932 26156907 ~ 26158502 (+)
G129427 NA non-coding downstream 239050 26160025 ~ 26160419 (+)
G129446 NA non-coding downstream 291955 26212930 ~ 26213344 (+)
G129455 NA non-coding downstream 411251 26332226 ~ 26335988 (+)
mt2 NA other upstream 558325 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 597179 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 1318582 24583845 ~ 24588337 (+)
G128858 NA other upstream 1449359 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 2170071 23457100 ~ 23736848 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 292 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 31355 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 308119 26229094 ~ 26332010 (+)
G129468 cpt1b,LOC107710383,LOC107686536,LOC107599889,LOC107671150 other downstream 382912 26303887 ~ 26306806 (+)

Expression


Co-expression Network