si:dkey-5i3.5 (LOC107710366,LOC107671161,LOC107559433,LOC107665548,LOC107599782)


Basic Information

Item Value
gene id si:dkey-5i3.5
gene name LOC107710366,LOC107671161,LOC107559433,LOC107665548,LOC107599782
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 21167515 ~ 21174321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264860.1
AAGCGCACTGGTTTTATCGGCCATAtgtaattgcattatttattctattaattaatgtattcattcaagtcatttatttgtttgcacgCGCCTGCTGCGAACTGTCACGCGCTGGTCTGCTCGTGCACGCCAGTATCTGCCTCAGCTCGCGAGTCGCCTCAGCAGCAGCTCACCTGCTGTCATGCTTTCCAGAGTGGCTACAATGGCAGGGGTCACTGCTCACAAGATCAGCAAACACATCACGTTCTTAGCCAGTGACTTGACTGGGACTCCAGCGACTGGCGTTTCACCCGCCAAACCGATTCTGCTGTTGCTGCCGTGGCTCGGCTCCAGACCACAAGCCATCGCCAAATATTGTGAGATTTACTTTCGCACAGGCTTTGATGTTCTCATAGTGGAAAGCGAGGTGAGCCAGTTCTTGTGGCCCCGCTGGGGGCTGGAGTATGGTGGCCGTCTGCTGGAATTATTAGAGAGCGAGCGCTTCTCACAGCGCCCCCTGCTGGTCCATGCTTTCTCCATAGGTGGATATACATTTGCTCAGGTGCTTGTTCATGTGGCCAAAGACACCCAGCGGTACCAAGGCCTCACACACAGGATCAGGGGACACATCTATGACAGCCTTGTCATGGGATCGCTGGAGCATATGGCCAACGGTCTGGGTAAAACCATATTCCCCCGGATGGAAGGCATCGTGAAGTCGGCTAGCCTTCTGTACTTCCGTATCTTTAAACACCAGACGGTTGACTACTTCAACTCATCGATCGGTGTTTTCTGGAACACTCCTGTGACTGCTCCGGCTCTTTTCTTCTACTCCGAGAACGATGCTCTGTGCGATTACAAGAGCTTGGAGGAGATGGTGGAGCTCTGGAGGAGCCGCGGTCAAACCGTCGAGAGCAAGAAGTGGAAGGAGTCTGTTCACGCAGGTCACCTCCGCGTACACCCTCAGGATTATCTGTCCACGTTGGAGTCCTTCGTGCAGTCTCTCAACATGGTGCCTCTGAAGgccaaaatgtgaattttgaagGCAGCTACCGTCTCGTTAAACATCCAAGTTGCCTGAAGTGCCTGATTATATTGTTACATTGACATTCTCACGCTCTGCTCAAATGGTCTTGCAAATAACAATTTCTCAAACTGCTTCAGTctgttgaaatatttatgcaACTACATGAAATCCTTTTCAGCCAAAAAATTCGTACCCTGTCCAGAAAAAGAATCCGAGCTCTTTTTAAAGACTGTAGCACTGGCACATCGGGGATGTGTAACGCTTCTCAATCTGCTGATGTGCGACCATTTAGGTTTATTGCACTACAATATGAAACTCTGGTACTTTATTCAACATCTGTTCAGACCTCAAAACGTTGTAATACTGAACCGTGTATCATTATTTTgttgtacaaatattttttctaaaccGTAAACACTTGAATAACACTTGTTTTCAACCTTTTTGTTAATAGTGAATTATAGTTTATGTGATTTAACGTATATAACATAATATGACTTCATAATTTTGAACTTGACTTAACATTTAAATCTGTGGTATGTTCATTTGAATATACTTTCCTTTTGATCATTTATGTTATTTGTCAGCGACAAAagaagttaataaaaacatgatataattacatataatacgCTGTTTGGCACAATCCAGGTAAACCTCTTTTTTCAGGTACCTATGCATACAATATTGTAAAGACAGTTAAAGTGGgacatttttgtattacatgtttttatatttttattttgtatagtgTAATGGAAATCTTTAGCCTATGCCAACTTgcatatttcaaaacaatatttatggaAAATTATCCAAGTGTCCTGCTGTACATTGCATCAGTGcaataatgtatgtttttacGTTCTTTTAgcaaaagtcaaataaataattcagattctt

Function

NR:

description
PREDICTED: transmembrane protein 53-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264860.1 True 1909 mRNA 0.43 3 21167515 21174321

Neighbor

gene id symbol gene type direction distance location
impdh1a impdh1a,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC107671158,LOC108442450 coding upstream 12917 21136806 ~ 21154598 (+)
cpt1b cpt1b,LOC107686536,LOC107599889,LOC107671150,LOC107710383,LOC107559523 coding upstream 186816 20973515 ~ 20980699 (+)
LOC122362691 LOC107719968,LOC107671151,LOC101886608 coding upstream 194673 20970092 ~ 20972842 (+)
chkb chkb,LOC107686538,LOC107710386,LOC107719962,LOC107559534,LOC107671153 coding upstream 197814 20963128 ~ 20969701 (+)
arsa arsa,LOC107710387,LOC107599918,LOC107560065 coding upstream 234082 20928515 ~ 20933433 (+)
tmem243a tmem243a,LOC107560025,LOC107665549,LOC107710379 coding downstream 270 21174591 ~ 21176792 (+)
elapor2a LOC107729994,LOC107671159,LOC107665539,LOC107559856,LOC565175 coding downstream 2596 21176917 ~ 21193969 (+)
sema3d sema3d,LOC107559401,LOC107723940,LOC107672594,LOC107729993 coding downstream 121777 21296098 ~ 21328330 (+)
sema3ab sema3ab,sema3a,LOC107665547,LOC107672583 coding downstream 204607 21378928 ~ 21408841 (+)
sema3e sema3e,LOC107665550,LOC107723938,LOC107563409,LOC107738421,LOC107559846 coding downstream 254406 21428727 ~ 21466593 (+)
G128158 NA non-coding upstream 1442 21165272 ~ 21166073 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding upstream 4764 21161886 ~ 21162751 (+)
G128149 NA non-coding upstream 38482 21128553 ~ 21129033 (+)
G128148 NA non-coding upstream 86224 21080769 ~ 21081291 (+)
G127935 NA non-coding upstream 230073 20894777 ~ 20937442 (+)
G128216 NA non-coding downstream 292457 21466778 ~ 21468553 (+)
G128251 NA non-coding downstream 464089 21638410 ~ 21641629 (+)
LOC122323089 NA non-coding downstream 520125 21694446 ~ 21835021 (+)
G128318 NA non-coding downstream 859350 22033671 ~ 22068953 (+)
G128329 tspan9a,LOC107559293,LOC107738414,LOC107587031,LOC107672591,LOC107084745,LOC108414266 non-coding downstream 935152 22109473 ~ 22110458 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 526456 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 566996 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 610888 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 618158 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 1073914 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1226623 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1260485 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2282779 23457100 ~ 23736848 (+)
G128858 NA other downstream 3275444 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 3409524 24583845 ~ 24588337 (+)

Expression


Co-expression Network