arsa (arsa,LOC107710387,LOC107599918,LOC107560065)


Basic Information

Item Value
gene id arsa
gene name arsa,LOC107710387,LOC107599918,LOC107560065
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20928515 ~ 20933433 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264880.1
GACGGTGATCACGTGATCCAATCGAGACAACATGAAAGACTCCATCAGTTGCAAATGATAGCAATACAGTTTTGAGGAAAGGACTAGACCCAAGGTTCATAGCGAAGCGTTTGTTCATAACAAACCGAGAAGGGGCTGTCATGCTACTTCAATAACgttttgtattaattgtaaAGATTGTGTAAGCTGCGTAATGGCTTTAATGCGCGTAATCGCGTTGCTTGCACTGATCACAGCTCGATGTGCTCGCGCCTCGCCGCCAAACTTCGTGCTGCTGTTCGCCGATGATTTGGGTTACGGTGATCTGGGCTGTTTTGGACACCCGAGCTCCCTCACTCCGAATCTAGACAGACTTGCATCCCACGGGCTCCGGTTTACCGACTTCTACGTCACGAGTCCCGTGTGCAGCCCCTCCAGggcaGCCCTGCTGACGGGCCGCTATCAGACTCGTTCCGGCATCTACCCGGGTGTGCTGTATCCGGCCTCTAAAGGGGGTCTCCCGCTCAACGAGACCACTATTGCAGAGGTGCTGAAGTCTAAGGGTTACACTACAGCCATAGTGGGCAAATGGCACCTGGGCGTTGGGCTGAACGGCACTTACCTGCCCACCAGACAGGGCTTCGACAACTATCTCGGTATCCCATACTCACACGACCAGGGTCCCTGTCAGAATCTCACGTGTTTCCCTCCGGATGTGAAGTGCTTTGGCTTCTGTGATCAGGATGTTGTAACCGTACCTCTCATGTTTAATGAGAACATCAAGCAGCAGCCCGCAGACTTCCTGCAGCTCGAGAAGGCCTACAGTGAATTTGCCACTCAATTCATCAGTGATGCTGTCCAACATAACCGTCCTTTCTTCCTGTACTATCCTTCACATCACACACACTACCCTCAGTATGCAGGCTCAGACTATGCAGGGAAGTCTCCTCGTGGGCCGTTCGGTGACGCTCTGATGGAGTTTGATGGCACTGTGGGGAAGATCCTGCAAACCCTGGAGGAGACGGGGGCGATCAACAACACTCTGGTCTTCTTCACTGGTGACAACGGGCCAGAGCTCATGCGGAAATCACGTGGGGGAAACGCTGGACTGATGAAATGTGGCAAAGGCACGACTTATGAAGGAGGAATGAGAGAGCCAGCCATCGCATATTGGCCTGGATCCATCCAACCAGGTGTGACCCATGCCTTGGCCAGCTCTTTGGACATTCTGCCCACCTTTGCCACACTGGCTGGAGCTGTGTTACCTGACGTTCAGCTAGACGGGGTTGACATGACAAACATCCTGTTGAATCACGGAGAGAGTGAAAGACAGACCATCTTTTACTATCCAGTTTCTCCAAGCGAGAAGTATAGCGTGTTTGCAGTGAGATGGAAAAATTTCAAAGCACACTACTATACACAAGGTGCAATTCACAGTGTTAGCACCCCAGACAGCAACTGCTCATCACTTTTCCTCAAGCGCCATAATCCTCCTTTGCTATATAACATAGAGGCAGACCCATCAGAAAACTATAACCTTAACAGTACAGAATGGGACTCTGTGCTCAAGCTAATCCAGGTCTTCAAGGAGCAGTTTGAGGCTTCTATGGTGTTTGGCGAGAGCGAGATAGCCAAAGGGAGAGACTCTGCACTCGAGCCCTGCTGCATTCCTAATTGCACCCCTAAACCCACATGCTGCCGTTGCAATTCTGCACTTTAGTGGAAGCGGTGACAAGCACCGGCACGCTGCCAAATCATCGAATCACAGTTCACCAGAACGGCGAAAGGCTGATTGTGTTTACATTCTTCAagcaaaaatgcaatgcaaaaagcACAACTTTTCTGGAATCTCGTTTTGGTTCTTTGTTgaagaaaacaactgaaaagataaaaaatgaagttgttgttttttttgtcacagttAATGCCGTATGAATGCTAAAAAGTGTTATTAATTTTCTCTTATCTGTCGGTTTGCAGACCAAAATGTGGCTCTGACTAGTTCACCGATATAATAATAGGCTTTTGACGGCATTTGGTTGTAAAGGGAATAGAGGAGCTATACTGTGAAGTGTCAGTgttattaaaagtgtattttcatTTACTATCAGTCTGCTTTTAACACTGAATCGTTATAATggagtgattttaaaaataaaggaaagaaCACAGgtctaattatatttaa

Function

symbol description
arsa Predicted to enable arylsulfatase activity. Human ortholog(s) of this gene implicated in metachromatic leukodystrophy. Orthologous to human ARSA (arylsulfatase A).

NR:

description
arylsulfatase A

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K01134 ARSA; arylsulfatase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264880.1 True 2167 mRNA 0.48 8 20928515 20933433

Neighbor

gene id symbol gene type direction distance location
rabl2 rabl2,rabl2a,LOC107559580,LOC107710389,LOC107686543,LOC107662875,LOC107600941 coding upstream 256678 20666753 ~ 20671837 (+)
odf3b odf3b,LOC107686589,LOC107710372,LOC107559895 coding upstream 270692 20654532 ~ 20657823 (+)
zgc:77752 zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252 coding upstream 274845 20648300 ~ 20653670 (+)
arf5 arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562 coding upstream 294879 20629743 ~ 20633636 (+)
neto2b neto2b,LOC107710374,LOC107662839,LOC107599993 coding upstream 310335 20609937 ~ 20618180 (+)
chkb chkb,LOC107686538,LOC107710386,LOC107719962,LOC107559534,LOC107671153 coding downstream 29695 20963128 ~ 20969701 (+)
LOC122362691 LOC107719968,LOC107671151,LOC101886608 coding downstream 36659 20970092 ~ 20972842 (+)
cpt1b cpt1b,LOC107686536,LOC107599889,LOC107671150,LOC107710383,LOC107559523 coding downstream 40082 20973515 ~ 20980699 (+)
impdh1a impdh1a,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC107671158,LOC108442450 coding downstream 203373 21136806 ~ 21154598 (+)
si:dkey-5i3.5 LOC107710366,LOC107671161,LOC107559433,LOC107665548,LOC107599782 coding downstream 234082 21167515 ~ 21174321 (+)
LOC122362840 NA non-coding upstream 41400 20869875 ~ 20887115 (+)
LOC122363025 NA non-coding upstream 280807 20641765 ~ 20647708 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding upstream 339652 20586051 ~ 20588863 (+)
G127860 NA non-coding upstream 356205 20562083 ~ 20572310 (+)
G127785 NA non-coding upstream 544757 20325330 ~ 20383758 (+)
G128148 NA non-coding downstream 147336 21080769 ~ 21081291 (+)
G128149 NA non-coding downstream 195120 21128553 ~ 21129033 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding downstream 228453 21161886 ~ 21162751 (+)
G128158 NA non-coding downstream 231839 21165272 ~ 21166073 (+)
G128216 NA non-coding downstream 533345 21466778 ~ 21468553 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 287456 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 327996 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 371888 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 379158 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 834914 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1467511 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1501373 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2523667 23457100 ~ 23736848 (+)
G128858 NA other downstream 3516332 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 3650412 24583845 ~ 24588337 (+)

Expression


Co-expression Network