siah1 (siah1,LOC107742888,LOC107549647,LOC106573709)


Basic Information

Item Value
gene id siah1
gene name siah1,LOC107742888,LOC107549647,LOC106573709
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25787334 ~ 25803910 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264932.1
CTGACTTCAAACTGACATTTGACTCCTCGATCCACAGGCAACAGTGGTGACTGTGCAGGCGGGACTCTCTCCTTCCTTCTGCGGTCTTTCTGGGAGTTTGCGACTCTGTGCAACAGCGTACTTCTTTCCTCTACAATTTCTTCATTTGGAGAGCTAACTGGGTACTCTAAAAATCCTGGGAGTGGTCTTTCTTAAACAAGTTTTGGAATGTGCTTATAGAGGTGGAGATGCCTAACAGCTAGACTCCTTAACCCTGTTTTTAGTCTTTCTGGAGATTGCTGCTGAAGTCTCCTTCCAGGCACTGGAATCTGGATCTACTTGTGTAACATTCCTAGActacagcaatttttttttctactctaATGACTTTCTTTGTGCTCGTCCTGGGCTGTTCTTCATTGAAAAAGAAAGTCTTTTAAAACACAGATCTACTGCTCTCTACTTTGAGGAACACTTGCTGGAATTAAGACTGTAGGTGTGTTTTGGGACTCATCCCTTCCTCCATTGGGGGGTTGGGGTTGGGGATACCTTACCGTGGCCCTAGGTGACCTGTTGGAGCTGTGTTTCTATCTTAAGCTGCTTTTAGAAGACTGTAGTAAAACGAGTGTTAAACGGAAAAGGAGGGACCCTCTTGTACAGGCCCTTTTGTTTTTATGGAAAGAGCATGATGAAGAGTCAATCTGCTCCCCATGTCGGCTACCATTAGACTACAGCCTGTGTACTCATGGAAGGGGGTGCTCAAGCTCTTCTCTTGCATAGCGGCCAGAACTGCTAGTAAACCTAAAGAGGTCCACACATTTCAAGGAAAGAAGAAAGACGTACTTGGGAATCATATGGACGAAGAAATGAGTCGCCAGACTGCCACAGCGCTGCCCACAGGAACCTCTAAGTGTCCCCCTTCTCAGCGCGTCCCTACCTTGTCGGGCACCACCGCGTCCAACAGCGACCTTGCCAGCCTGTTCGAGTGTCCGGTCTGTTTTGACTATGTGCTGCCGCCCATCCTGCAGTGCCAGAGCGGACATTTGGTTTGTAGCAACTGCCGGCCCAAACTTACCTGTTGCCCCACCTGCAGAGGTCCTCTTGGTTCAATCCGCAATTTGGCCATGGAGAAAGTGGCCAACTCAGTGCTTTTCCCATGCAAGTATGCCTCATCGGGCTGCGAAGTCACCCTACCGCACACAGACAAGGCCGAACACGAGGAGCTTTGTGAATTCCGGCCATACTCTTGCCCCTGTCCTGGTGCCTCCTGCAAGTGGCAGGGATCTCTCGACGCCGTCATGCCGCACTTGCTGCACCAGCACAAGTCCATAACCACGCTACAAGGTGAGGATATCGTCTTCCTGGCCACAGACATCAACTTGCCTGGGGCGGTGGACTGGGTCATGATGCAGTCGTGCTTCGGCTTCCATTTTATGCTCGTGCTGGAGAAGCAGGAGAAATACGACGGCCACCAGCAGTTCTTTGCCATCGTGCAGCTGATTGGCACACGGAAACAGGCGGAAAACTTCGCCTACCGGCTGGAGTTGAACGGTCACCGGAGGCGACTCACCTGGGAGGCGACGCCACGCTCCATTCACGAGGGCATCGCCACCGCCATCATGAACAGTGACTGCCTTGTGTTTGACACCTCCATTGCTCAGCTGTTTGCAGAGAATGGCAACCTGGGCATCAACGTCACCATATCCATGTGCTGAGGACTAACAGCCGTGCATACTTgaacgcatacacacacatataaacatgaAACCAGACATTTCAATACACCGCAGGATACCTTGAGTTGTGCTTGTGGGACGGGGGAGTAGCTAACCTAGGGaacttttttgctgttgttcGTTCCGAGTAgtcatcaaaaaaaaacttattggTTGGAGCTTGGCACATCCAACCAGAACTCCTGGGTTCTCAATTTTATGCTACAATATtatataagttaaataattaatgtattcTACATTTTTGAGAGCAACATTCATTGCCCTTGAAGGTGTCGGAAAGCCACGTTTGTGGGATGGACATTTGCAAATGTGGCATTTGAAACGAGGGTTTGAGGAACGGCACGCTGAGCTGGATGGCGGTTGGGAATATTGATCAATTCTGGGGTGGGTTTGCTCAAAATGCGCAACCCTTAGAGCAAGTTTTTGTTCGTTCTGTTGTCGTTTCCCAAGACGTTTTGCATTTCAGTTCAGATAAAACACTAACTTTTATGTTCAAATattaggttttgttttattctaatcTTGTCCCCCCACCCCTTTTTTGTTCCCTTTAATTTTTCCTACCTTGAGTATGATACAGAAAGGTTCTGGTAATTGGTGCATGACCACTGGATAAGTTATAACAAGTCCAGATTTCATTTtagaagtcttgtttgtttctgCCTGTTGCTGCAGTGTTTctcctgtttgtttttgaagggATGGCCTGGCACACGCACATCAAGCCAGGTTATAAAAGCcacacactttttatatatatatatcaagtacTCCTTAAAAGATGGATACAagttgtacagtatgtgtgagGTCATAAGTTTTGTTTCTTAACCTGGAAGCCCTCAATTACAAACACTGGAGCAAACACTGCACTGAATACAAGGCAAGGAACCGGGGCAATTAATACAGTTATTATAATGAGATTATTGTCATAATTATCATTTTGTAATGACTTATAAGAAAATGGAATGAAAAAGGCTGTTGTAACCTTGTGGCTAATCTTCAGTGTTTGTAGATAGTGTTGTTCTTCAGAAGACATCAGtgtcttcttttctctttttgtaagtcaatatttttgttgctgttgttcttTGTATgtctgtatttctgtttttttgcaagGATAGGGTGAAGCAAAGCCAAACATCTCTGTGGATACATTGTACTGTTGCTAGTCCTGATctctaattttatttgttttattgtttgttttgttctattttGCCAGTAAATAAATCTATCTTTTTCATA
>XM_043264933.1
cagCTTCAGTCAGTGCGCGACACCGAGACTGCCGGGCGACAGCAGCGTCTCCTTTTAGCGAATGTGGAAACACAAACATCCAGACGATTAACGGACGTATAACCTAACTCGGATCTACGTGTAGTgggttgttttttaattgttccGTTTGGCAGCAGGAGGATATTTTTCTGGAGAGGTCCACACATTTCAAGGAAAGAAGAAAGACGTACTTGGGAATCATATGGACGAAGAAATGAGTCGCCAGACTGCCACAGCGCTGCCCACAGGAACCTCTAAGTGTCCCCCTTCTCAGCGCGTCCCTACCTTGTCGGGCACCACCGCGTCCAACAGCGACCTTGCCAGCCTGTTCGAGTGTCCGGTCTGTTTTGACTATGTGCTGCCGCCCATCCTGCAGTGCCAGAGCGGACATTTGGTTTGTAGCAACTGCCGGCCCAAACTTACCTGTTGCCCCACCTGCAGAGGTCCTCTTGGTTCAATCCGCAATTTGGCCATGGAGAAAGTGGCCAACTCAGTGCTTTTCCCATGCAAGTATGCCTCATCGGGCTGCGAAGTCACCCTACCGCACACAGACAAGGCCGAACACGAGGAGCTTTGTGAATTCCGGCCATACTCTTGCCCCTGTCCTGGTGCCTCCTGCAAGTGGCAGGGATCTCTCGACGCCGTCATGCCGCACTTGCTGCACCAGCACAAGTCCATAACCACGCTACAAGGTGAGGATATCGTCTTCCTGGCCACAGACATCAACTTGCCTGGGGCGGTGGACTGGGTCATGATGCAGTCGTGCTTCGGCTTCCATTTTATGCTCGTGCTGGAGAAGCAGGAGAAATACGACGGCCACCAGCAGTTCTTTGCCATCGTGCAGCTGATTGGCACACGGAAACAGGCGGAAAACTTCGCCTACCGGCTGGAGTTGAACGGTCACCGGAGGCGACTCACCTGGGAGGCGACGCCACGCTCCATTCACGAGGGCATCGCCACCGCCATCATGAACAGTGACTGCCTTGTGTTTGACACCTCCATTGCTCAGCTGTTTGCAGAGAATGGCAACCTGGGCATCAACGTCACCATATCCATGTGCTGAGGACTAACAGCCGTGCATACTTgaacgcatacacacacatataaacatgaAACCAGACATTTCAATACACCGCAGGATACCTTGAGTTGTGCTTGTGGGACGGGGGAGTAGCTAACCTAGGGaacttttttgctgttgttcGTTCCGAGTAgtcatcaaaaaaaaacttattggTTGGAGCTTGGCACATCCAACCAGAACTCCTGGGTTCTCAATTTTATGCTACAATATtatataagttaaataattaatgtattcTACATTTTTGAGAGCAACATTCATTGCCCTTGAAGGTGTCGGAAAGCCACGTTTGTGGGATGGACATTTGCAAATGTGGCATTTGAAACGAGGGTTTGAGGAACGGCACGCTGAGCTGGATGGCGGTTGGGAATATTGATCAATTCTGGGGTGGGTTTGCTCAAAATGCGCAACCCTTAGAGCAAGTTTTTGTTCGTTCTGTTGTCGTTTCCCAAGACGTTTTGCATTTCAGTTCAGATAAAACACTAACTTTTATGTTCAAATattaggttttgttttattctaatcTTGTCCCCCCACCCCTTTTTTGTTCCCTTTAATTTTTCCTACCTTGAGTATGATACAGAAAGGTTCTGGTAATTGGTGCATGACCACTGGATAAGTTATAACAAGTCCAGATTTCATTTtagaagtcttgtttgtttctgCCTGTTGCTGCAGTGTTTctcctgtttgtttttgaagggATGGCCTGGCACACGCACATCAAGCCAGGTTATAAAAGCcacacactttttatatatatatatcaagtacTCCTTAAAAGATGGATACAagttgtacagtatgtgtgagGTCATAAGTTTTGTTTCTTAACCTGGAAGCCCTCAATTACAAACACTGGAGCAAACACTGCACTGAATACAAGGCAAGGAACCGGGGCAATTAATACAGTTATTATAATGAGATTATTGTCATAATTATCATTTTGTAATGACTTATAAGAAAATGGAATGAAAAAGGCTGTTGTAACCTTGTGGCTAATCTTCAGTGTTTGTAGATAGTGTTGTTCTTCAGAAGACATCAGtgtcttcttttctctttttgtaagtcaatatttttgttgctgttgttcttTGTATgtctgtatttctgtttttttgcaagGATAGGGTGAAGCAAAGCCAAACATCTCTGTGGATACATTGTACTGTTGCTAGTCCTGATctctaattttatttgttttattgtttgttttgttctattttGCCAGTAAATAAATCTATCTTTTTCATA
>XM_043264935.1
GGTGTGTCTGTTTCTTAACATCATGAGGTCCACACATTTCAAGGAAAGAAGAAAGACGTACTTGGGAATCATATGGACGAAGAAATGAGTCGCCAGACTGCCACAGCGCTGCCCACAGGAACCTCTAAGTGTCCCCCTTCTCAGCGCGTCCCTACCTTGTCGGGCACCACCGCGTCCAACAGCGACCTTGCCAGCCTGTTCGAGTGTCCGGTCTGTTTTGACTATGTGCTGCCGCCCATCCTGCAGTGCCAGAGCGGACATTTGGTTTGTAGCAACTGCCGGCCCAAACTTACCTGTTGCCCCACCTGCAGAGGTCCTCTTGGTTCAATCCGCAATTTGGCCATGGAGAAAGTGGCCAACTCAGTGCTTTTCCCATGCAAGTATGCCTCATCGGGCTGCGAAGTCACCCTACCGCACACAGACAAGGCCGAACACGAGGAGCTTTGTGAATTCCGGCCATACTCTTGCCCCTGTCCTGGTGCCTCCTGCAAGTGGCAGGGATCTCTCGACGCCGTCATGCCGCACTTGCTGCACCAGCACAAGTCCATAACCACGCTACAAGGTGAGGATATCGTCTTCCTGGCCACAGACATCAACTTGCCTGGGGCGGTGGACTGGGTCATGATGCAGTCGTGCTTCGGCTTCCATTTTATGCTCGTGCTGGAGAAGCAGGAGAAATACGACGGCCACCAGCAGTTCTTTGCCATCGTGCAGCTGATTGGCACACGGAAACAGGCGGAAAACTTCGCCTACCGGCTGGAGTTGAACGGTCACCGGAGGCGACTCACCTGGGAGGCGACGCCACGCTCCATTCACGAGGGCATCGCCACCGCCATCATGAACAGTGACTGCCTTGTGTTTGACACCTCCATTGCTCAGCTGTTTGCAGAGAATGGCAACCTGGGCATCAACGTCACCATATCCATGTGCTGAGGACTAACAGCCGTGCATACTTgaacgcatacacacacatataaacatgaAACCAGACATTTCAATACACCGCAGGATACCTTGAGTTGTGCTTGTGGGACGGGGGAGTAGCTAACCTAGGGaacttttttgctgttgttcGTTCCGAGTAgtcatcaaaaaaaaacttattggTTGGAGCTTGGCACATCCAACCAGAACTCCTGGGTTCTCAATTTTATGCTACAATATtatataagttaaataattaatgtattcTACATTTTTGAGAGCAACATTCATTGCCCTTGAAGGTGTCGGAAAGCCACGTTTGTGGGATGGACATTTGCAAATGTGGCATTTGAAACGAGGGTTTGAGGAACGGCACGCTGAGCTGGATGGCGGTTGGGAATATTGATCAATTCTGGGGTGGGTTTGCTCAAAATGCGCAACCCTTAGAGCAAGTTTTTGTTCGTTCTGTTGTCGTTTCCCAAGACGTTTTGCATTTCAGTTCAGATAAAACACTAACTTTTATGTTCAAATattaggttttgttttattctaatcTTGTCCCCCCACCCCTTTTTTGTTCCCTTTAATTTTTCCTACCTTGAGTATGATACAGAAAGGTTCTGGTAATTGGTGCATGACCACTGGATAAGTTATAACAAGTCCAGATTTCATTTtagaagtcttgtttgtttctgCCTGTTGCTGCAGTGTTTctcctgtttgtttttgaagggATGGCCTGGCACACGCACATCAAGCCAGGTTATAAAAGCcacacactttttatatatatatatcaagtacTCCTTAAAAGATGGATACAagttgtacagtatgtgtgagGTCATAAGTTTTGTTTCTTAACCTGGAAGCCCTCAATTACAAACACTGGAGCAAACACTGCACTGAATACAAGGCAAGGAACCGGGGCAATTAATACAGTTATTATAATGAGATTATTGTCATAATTATCATTTTGTAATGACTTATAAGAAAATGGAATGAAAAAGGCTGTTGTAACCTTGTGGCTAATCTTCAGTGTTTGTAGATAGTGTTGTTCTTCAGAAGACATCAGtgtcttcttttctctttttgtaagtcaatatttttgttgctgttgttcttTGTATgtctgtatttctgtttttttgcaagGATAGGGTGAAGCAAAGCCAAACATCTCTGTGGATACATTGTACTGTTGCTAGTCCTGATctctaattttatttgttttattgtttgttttgttctattttGCCAGTAAATAAATCTATCTTTTTCATA

Function

symbol description
siah1 Predicted to enable ubiquitin conjugating enzyme binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to be involved in neuron apoptotic process and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be active in cytoplasm. Is expressed in germ ring; myotome; and nervous system. Orthologous to human SIAH1 (siah E3 ubiquitin protein ligase 1).

NR:

description
E3 ubiquitin-protein ligase Siah1 isoform X1

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04506 SIAH1; E3 ubiquitin-protein ligase SIAH1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264932.1 True 2969 mRNA 0.45 3 25792590 25803910
XM_043264933.1 False 2359 mRNA 0.46 3 25787334 25803910
XM_043264935.1 False 2208 mRNA 0.45 3 25795068 25803910

Neighbor

gene id symbol gene type direction distance location
n4bp1 n4bp1,LOC107549646,LOC107738738,LOC107743359,LOC107583777 coding upstream 4848 25772135 ~ 25782486 (+)
cbln1 cbln1,LOC107549644,LOC107583779,LOC106573707 coding upstream 124904 25656644 ~ 25662430 (+)
si:ch211-212o1.2 si:ch211-212o1.2,tmem189,LOC107738740,LOC107740306,LOC107672277,LOC107583780,LOC108264382,LOC106560866 coding upstream 147963 25614213 ~ 25639371 (+)
znf423 si:ch211-216l23.1,LOC107738741,LOC107583782,LOC107740334,LOC107672235,LOC107549642 coding upstream 175206 25471074 ~ 25612128 (+)
si:ch211-216l23.2 LOC107549641,LOC107740307,LOC107583785,LOC107672316 coding upstream 323231 25457998 ~ 25464103 (+)
st3gal2 st3gal2,LOC107742884,LOC107672232,LOC107686287 coding downstream 50531 25854441 ~ 25875732 (+)
trnal-cag_32 NA coding downstream 93513 25897423 ~ 25897505 (+)
LOC122322950 LOC107549654,LOC107576747,LOC107672203,LOC107742895,LOC107686352 coding downstream 93632 25897542 ~ 25902915 (+)
arih1 arih1,LOC107742882,LOC107672283,LOC108423892,LOC107549652,LOC107686289 coding downstream 103009 25906919 ~ 25920975 (+)
hacd3 hacd3,LOC107672296,LOC107738726,LOC107583769,LOC107742880,LOC107596982 coding downstream 136819 25940729 ~ 25943948 (+)
G129370 NA non-coding upstream 110473 25676557 ~ 25676861 (+)
G129368 NA non-coding upstream 112024 25675071 ~ 25675310 (+)
G129360 NA non-coding upstream 123749 25662497 ~ 25663585 (+)
G129270 fam192a non-coding upstream 344893 25440048 ~ 25442441 (+)
G129262 NA non-coding upstream 438296 25348756 ~ 25349038 (+)
G129435 NA non-coding downstream 163106 25967016 ~ 26221023 (+)
G129438 arih1,LOC105007423,LOC107738728,LOC107686289 non-coding downstream 352997 26156907 ~ 26158502 (+)
G129427 NA non-coding downstream 356115 26160025 ~ 26160419 (+)
G129446 NA non-coding downstream 409020 26212930 ~ 26213344 (+)
G129455 NA non-coding downstream 528316 26332226 ~ 26335988 (+)
mt2 NA other upstream 438740 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 477594 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 1198997 24583845 ~ 24588337 (+)
G128858 NA other upstream 1329774 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 2050486 23457100 ~ 23736848 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 117357 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 148420 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 425184 26229094 ~ 26332010 (+)
G129468 cpt1b,LOC107710383,LOC107686536,LOC107599889,LOC107671150 other downstream 499977 26303887 ~ 26306806 (+)

Expression


Co-expression Network