sema3ab (sema3ab,sema3a,LOC107665547,LOC107672583)


Basic Information

Item Value
gene id sema3ab
gene name sema3ab,sema3a,LOC107665547,LOC107672583
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 21378928 ~ 21408841 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264957.1
ggTCTTTCTCAGCTGGCTCCGGTCTCTCTCAGTCTTGCGCTCTGACAGTGTGTGTGCTGAGCTTttgcaaagagagagagagagagagagagagagagagagaagcgcCTAGGGCTTCACCGAGCCTTAGTTGAGTTTAGTCTCAACTgtgttactatttaaaacagTCAGAGAGGAAGAGCGCACAACATCTAGGAGATAAACAACCACAGGAACACTCTTTAAAGTGAGACAGTGAGCGGTGTGGACACTCGTGGTCCTCTCCCGAGGCTGTGACTGCTTCACCAGGAGAGATGTGATCGTTGTGTGACTTATTTAATACACAGACACACCTGCTCCATCCTCAGGTGGCGTTCCGAAGGACTGGATTGCTGAACGAAACGAGTTTACCAGAGGCCGCTGGACTGCACGCAAGCAGGGGTGAAAATGGACTACCTGTGGGGGATTGTACTGCTGCTGTGGACCCTCAGAGGAGCCGACGCTCAGAGGAGCAAGAACAACGTACCCCGGCTCAAACTCTCGTATAAAGAAATGTTGGAGTCTAACAACCTGCTCACTTTCAACGGATTGGCCAACAGCTCTGCCTATCACACCTTTTTACTGGACGAGGAGAGAGGTCGGCTCTTTGTGGGCGCCAAAGATCACGTGCTGTCTTTCAACTTGGTGGACATCAATCTAGACATGCAACTGATATCTTGGCCTCCTTCACCGACTCGGCGAGATGAATGCAAGTGGGCTGGGAAGGATGTCCAGAAGGAGTGCTCAAACTTCATAAAGGTTCTACAGCCGTTCAATCAGACACACTTGTATGTGTGCGGAACAGGAGCCTTTCATCCCATCTGTTCTTATGTGGAAGTGGGCAAACGCCCGGAGGACAACATTTTTCGTCTGGGGTCGTCAAGCTATGAGAATGGCCGCGGAAAGAGTCCATACGACCCAAAACTGCTGACTGCTTCCATGCTGATCGACGGGGAGCTTTATGCTGGGACATCGGCTGACTTCATGGGCCGGGACTTTGCCATTTTCCGAACGTTAGGCAAGCACCATCCAATCAGAACAGAGCAGCATGACTCCAGATGGCTCAATGATCCTAGATTTATCAGTGTGCATCTCATCCCGGAGAGCGACAACCCTGAAGACGACAAGATCTATTTGTTCTTCAGGGAGAACGCCATCGATGGAGAGCAAGTCAGCAAAGCCACACACGCCAGAATCGGACAGCTATGCAAGAACGATTTCGGAGGCCACAGGAGTTTGGTGAACAAATGGACCACGTTTCTGAAGGCCCGTTTAATCTGCTCCGTTCCTGGCCTTAATGGCATCGACACACACTTTGATGAACTACAGGATGTTTTTCTCATGAGCTCCAAGGATCCCAAAAACCCTATTATATATGCTGTATTTACAACATCCAGTAACATCTTTAAGGGCTCAGCGgtgtgtatgtacagtatggCGGATATCAGGAGGGTGTTTCTGGGCCCCTATGCCCACCGAGATGGACCCAACTACCAATGGGTACCATTTTTGGGTAGAGTGCCGTATCCAAGACCTGGCACGTGCCCCAGCAAAACGTTTGATGGTTTTGAATCAACAAAGGACTTTCCTGATGATGTTATCACATTTGCCAGAAGCCATCCAGCCATGTACAACCCAGTGTTCCCCATCAACAACCGTCCAATCATAATCAAAACCGATGTTGACTATCAGTTCACACAGATAGTGGTGGACAGGGTGGAGGCAGAAGATGGACAGTATGATGTCATGTTTATTGGCACCGACATGGGCACCGTTCTTAAGGTGGTTTCTATCCCCAGAGGAACATGGCACGATCTTGAAGAAGTCCTGTTGGAAGAGATGACTGTGTTCAGAgaaCCAACAGCTATTACAGCTATGGAACTTTCCACAAAGCAGCAACAGCTCTATCTCGGATCCACCATTGGGGTTTCTCAGATGCCGTTGCATCGCTGTGACGTGTACGGGAAGGCCTGCGCTGAGTGCTGTCTGGCACGTGACCCTTACTGCGCCTGGGACGGCTCACAGTGTTCCCGATACTTTCCAACTGCTAAGAGGAGAACGAGGCGTCAGGATATAAGGAACGGAGACCCCCTGACTCAGTGTTCAGATCTACAGCATCACGATGAGGCAGACGGAGAGAGGGGTTTGCTGGATAAGACGGTGTACGGGGTTGAAAACAGCAGCTCTTTTCTGGAGTGCAGTCCTAAATCCCAGCGTGCCCTTATTTACTGGCAGTTTCAGAGACACGGAGAGGACCGCAAACAAGAGATAAAGTCAGATGAACGGGTGTTGGGCACAGAACAAGGTCTGTTGATCCGAaccctccatcagaaggactcgGGTGTGTATTACTGTCACGCTGTCGAACACGGCTTCATCCAGACCCTCCTCCGCCTCACGCTCAACGTCATTCCCGCCGAACACCTGGATGACCTACTGAACCGAGACCCACCAGACAGCAACGACCCAGCCAACGGCAAGATGTGGTACCGCGACTTTCTGTCCCTCATCAACCCGCCGAGCCCGAACAGCGTCGACCAGCTCTGCGAGCAGGTTTGGAAAAGAGAACGCAAACAGCGTAGGCAGAAAGCCAATCTGCTGCACGCCAGCCAATCACACGCCAGCCAGCTCATccactccagccaatcacaCACCAGTAAGTGGAAGCTGCtacaagaaaacaagaaaggaCGCAATCGCAGGACCCACGAGATGCAGCGGGCGCCCCGCAGCGTGTGACATGGACCCTTAATAAAAAAGGATAAGGAAATCCAAAAGACTTCTGCTGAGACTGGACACAGGAAGAGTGGAATTCCACTTCCTGTAGTAAGTGTGTGAGAGATTTAGAGCACATCTTCATTCACACTTATCGAGACTCAAGAGGACCTAACGGGACACAAGATGCTAACAGATACTGAAATACCTGTAAATATgacataaacacaaaattattCTGTGAGACAGGATTCAGTCTGTATaaaaaaacttcattttatGAGGGACAAAACATGGATGCTGAAAGACCACTGTTTAACCTCTATTTAGCTGAAGCACAATCccagtgcattctgggtaacGAACTTGTCAGTGATATTATGTGTATAGAGCGTGTTGACCttaacatatactgtatatctttGTATCAGAACGGTAGGTCCTTCAGTTTATGTATGTATCCATTAATTAGGAATTGTTCTGTAGGgtttattcttctttttcttcccccTATTTCTATCTTCCTCCttgtgttttctattttcatcTGCTGCAAAAGCAACGCCTCAGCAAATCCATTAACGGAACTGTGTTGTTCCTTTGAATAAGCTCTTCCTGACaagaaaaaacaactaaaaatattttctgctattttttttagattaatatttaattttgtaccgTGCCAGAGTATAtctaaaatattgcataatagatttattttattattagttgtcTTCATTGTAAACCACTGCACCATGAGGGTTAACAAGCCTCTTCACTAACTTTTTCTCTTCAGTTAAGTTATTTGTTGATATGATTTTGGTCTATGTTCACATTCACGTTTATATAAAAGCATCGTGGTCGAGTATATGAAATAAGGTGGCATTTATTAAGGGGTATTGCTGTACGTTCCTTTTTGTCATGTTTGTCATGCATACTTCGGGAAATAGTGGCTTTCAATACATgttcaaaaacagaatttatgAAAAACCAATCCACACCACTATAGAGAGTATATGGCTGATTTTCAGCCGATTAATACTTCTGTTTATGACATAACATTATTACTTGTAACTGCTAAAGTGTTTAGCTTTTTTACAAGGCCCTGCTATTTATGTGACATTCAAGGCTTCATTTTAAGTCAACATGAATACATCTGAAAGTGCATCTGGAATACTTTTTGCTACTATAACATGACATTTCTGACTGAAACAGCATTAATCGTTATTTTATACAAGCTATAGTCCGTAAGTAAAATTACATCCACAAAGATGTAACGAAGCAAAAAGACCAATTTGTATCtcatcaaaatataataaaatgttaaaatgtagcTTCTTCTCTGAGACGACTTTCAACGTCAAAAAGGTTTCAACCAATCGGCGGCGCCATTGTTACACTCCTCCATATATATCCGTAGCTCAGAGATGTAAGCagatacttttacattttattacatttttaagagagattattatttagacattttgttTCCCCGTAAGTCCTTAAGCATGAACCATGCAATAAGACCAAAAACCGAGAGAGTAAATGGGGTTggttttgatttcttttcatGAATTTAAATACGAGAGGGCAAAGGAGGACAAATTTACAACCGTTATATAATATCCCGAGCCTGTCCCTTGGCTGGGGAAGGGACAGCTGTGTGACTGGAACTGCTGGGATCAGAGACAGAACACAGCTGGGACCGGACTCAGACTCCTTGAGAAGTCCTACTTCGACCGAATTCGTTTTATCAAGTCATTTTTGTCCCCTCTTGTTGAggccacacacactctcacgcctGCGGCACACATATATCTGAATGTAGCTGTGAACGTATAGACTATTTACGGAAAAAAAATGGTCCAGAATATATACCACTGTGTACAAACTGCATGTGAATTTACAGCACCACTCATTTCTATACTCGTTTACAGTAGCTGCTCTTGTTAATGAGTGATTTGTCTGGCGTTGGATTCCAGGTGGTGCTTAAAAATCTTCTGCTAATAATGACAGATGGTGTTATCGACGGGCATAATTCCCGCCTGATGAATTCTCTCCCTTTGTAGCTAAGTGTATAACCGCTGTAAATGAAAGGATGTCAGATGCAAAACTTAACAGTATGAACTCGGCCGGCTCTGTCTGAACGGACATTGGGCAGAAATGGACACCTGCCTTTGCTTAGGCTTTTGACAGGGACTCTCCTGAACTGGAAACGAGGGACAAAGACATGAAAATGCTGctgtaaattattcatttctggCATGCATTctgctgtttaaataaatgtctcttCTAAAGAA

Function

symbol description
sema3ab Predicted to enable chemorepellent activity; neuropilin binding activity; and semaphorin receptor binding activity. Acts upstream of or within branching involved in blood vessel morphogenesis; branching morphogenesis of a nerve; and motor neuron axon guidance. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in brain; myotome; pharyngeal arch; and somite. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 16 with or without anosmia. Orthologous to human SEMA3A (semaphorin 3A).
sema3a Predicted to enable chemorepellent activity; neuropilin binding activity; and semaphorin receptor binding activity. Involved in negative regulation of neuron projection development; olfactory bulb development; and regulation of axon extension involved in axon guidance. Predicted to be located in extracellular region. Predicted to be active in axon and extracellular space. Predicted to be integral component of plasma membrane. Implicated in hypogonadotropic hypogonadism 16 with or without anosmia.

NR:

description
PREDICTED: semaphorin-3A

GO:

id name namespace
GO:0048755 branching morphogenesis of a nerve biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264957.1 True 5042 mRNA 0.45 17 21378928 21408841

Neighbor

gene id symbol gene type direction distance location
sema3d sema3d,LOC107559401,LOC107723940,LOC107672594,LOC107729993 coding upstream 50598 21296098 ~ 21328330 (+)
elapor2a LOC107729994,LOC107671159,LOC107665539,LOC107559856,LOC565175 coding upstream 184959 21176917 ~ 21193969 (+)
tmem243a tmem243a,LOC107560025,LOC107665549,LOC107710379 coding upstream 202136 21174591 ~ 21176792 (+)
si:dkey-5i3.5 LOC107710366,LOC107671161,LOC107559433,LOC107665548,LOC107599782 coding upstream 204607 21167515 ~ 21174321 (+)
impdh1a impdh1a,LOC107559456,LOC107665545,LOC107710381,LOC107599814,LOC107671158,LOC108442450 coding upstream 224330 21136806 ~ 21154598 (+)
sema3e sema3e,LOC107665550,LOC107723938,LOC107563409,LOC107738421,LOC107559846 coding downstream 19886 21428727 ~ 21466593 (+)
pclob LOC107559387,LOC107723935,LOC107672584,LOC107665542,LOC107738431,LOC107563410 coding downstream 68487 21477328 ~ 21546134 (+)
LOC122363109 cacna2d1,LOC107672590,LOC107738419,LOC107673139 coding downstream 141304 21550145 ~ 21638322 (+)
LOC122323126 LOC107738418,LOC107723941,LOC107672595,LOC107563412,LOC100334116,LOC107673134,LOC107559839 coding downstream 247480 21656321 ~ 21681835 (+)
lepa NA coding downstream 511266 21920107 ~ 21922673 (+)
G128158 NA non-coding upstream 212855 21165272 ~ 21166073 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding upstream 216177 21161886 ~ 21162751 (+)
G128149 NA non-coding upstream 249895 21128553 ~ 21129033 (+)
G128148 NA non-coding upstream 297637 21080769 ~ 21081291 (+)
G127935 NA non-coding upstream 441486 20894777 ~ 20937442 (+)
G128216 NA non-coding downstream 57937 21466778 ~ 21468553 (+)
G128251 NA non-coding downstream 229569 21638410 ~ 21641629 (+)
LOC122323089 NA non-coding downstream 285605 21694446 ~ 21835021 (+)
G128318 NA non-coding downstream 624830 22033671 ~ 22068953 (+)
G128329 tspan9a,LOC107559293,LOC107738414,LOC107587031,LOC107672591,LOC107084745,LOC108414266 non-coding downstream 700632 22109473 ~ 22110458 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 737869 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 778409 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 822301 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 829571 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 1285327 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 992103 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1025965 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2048259 23457100 ~ 23736848 (+)
G128858 NA other downstream 3040924 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 3175004 24583845 ~ 24588337 (+)

Expression


Co-expression Network