ube2na (ube2na,ube2nb,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528)


Basic Information

Item Value
gene id ube2na
gene name ube2na,ube2nb,ube2n,LOC105897570,LOC107707098,LOC107658971,LOC106609528
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24527211 ~ 24534508 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264986.1
TACGTTTCCGCGTGCGTCTGTACGCAACGCGCCGGAAGGCGTGTGTGCACTGCGTCTCCGCCGTCAATGCAAACGAAGTAAGAGGCACCGAGAGTCAAAGCTAAAATCCGCATTCAAGACAAGATGGCAGGGTTGCCCCGCAGGATCATTAAGgaaacaCAGCGTTTGTTGGCAGAGCCGGTGCCAGGTATAAAGGCAGAGCCAGATGAGGGGAACGCTCGCTACTTCCATGTGGTCATCGCCGGACCTCAAGACTCCCCCTTCGAGGGAGGAACTTTTAAACTTGAACTCTTTCTTCCTGAAGAATATCCCATGGCAGCTCCGAAAGTACGCTTCATGACCAAAATATATCACCCCAATGTAGACAAGTTGGGAAGAATATGTCTAGATATTTTGAAAGATAAGTGGTCTCCAGCCTTGCAGATCCGCACAGTGCTGCTATCAATCCAGGCATTACTAAGCGCTCCCAACCCTGATGATCCTCTAGCAAACGACGTCGCAGAGCAGTGGAAGACTAACGAAGCTCAAGCCATAGAGACAGcCCGAACATGGACCAGGCTTTATGCCGGAAACAATATTGAAGTGTAGAAATGTAcgtggggagaaaaaaaaaaaaaaaaaaaaaaggaagtcaaGAGTGAAAACAACTCCATGTTCTGCCAAGACCTATTCATTTTCATGTAAAGGACACAgtcttaggaaaaaaaaatatgataaactGTAAAGAATATATTAACACaaaagttaaaagaaaactTCAGACAATTTgtgatttaaatgcacattagtacaaaaaaaatgtctttgtccTGATTCACTGCTGTTGAGATGCATGGGCAGATGATCTACTCATACGGCTTTCTTTTACAGTGGTTGGGGAGGGAGCCGCAGACTTCTGCTATGAAGCGTGCATTAAAACTGACTGTCATTCGTCTGtccctttgtttttgttttgttttttttttttttcgtgggAGGGGGgtaactttttatatttcttttaaccTATTCTcgttgctttttcttttcttttttttaaacgaggAGCAGCAGACTAGCCCCCGTTTAGAGCACCCTTTCTGTCAAACCGAAGACCTACCCCGTTAGAAAacctagcaaaaaaaaacaaaaagtgtgttGTAAAACGGAAAGAGACTCCAGATGTAAACCACACGCAAACAGTAATTTCACCTGGGAAATGATTCAACTGGAAAGTCCTTCCACCATCACAGAAGCTGTTAAAGAcgtaaaaaaaaccctaatgtAGACTTGATTTGTGTTTTGGACTACAGGCGAGGTAGAGCTAGAGCGAAGGGAGATTTTGCGTAATATTTCTTTTAGTATAACAATTCTGTTAATGTATCcggttttagtgtttttgttttatctgtctTGCCATCGCTGTACTAATTGCACTCTTGAAACTCCATCATTGcgtgctttttattttgttgtgtcCGTCACAGTCCAGTGCATCGAAATTAATTTGTCCGTTTCTTCccttaagcatttattttgaaacgcCATGGTTGCGGGGAAGGGGGATGAAGTAAGATGAGTTGTGAGATTTTAGTAAAGGGTTGAGGGGTGGGAATGTCTGCACAAACATTGCAAAAGATCAATAAAGGCTTTGTCTCAATTTCCACGATTGGTCTTTGGTTAAAACGTCAACTTCAACCGTGTTTGTAAGTTCCCGCTTTCTACAGAAAGGGGAAAAAGAtcctgctttttaaaaaaaaaaaaaaaaatgtgatgacaACAGTCCACACACAtatttctgttctttctgtaaataaaatctgttgattaataagaaa
>XM_043264987.1
GTACGTTTCCGCGTGCGTCTGTACGCAACGCGCCGGAAGGCGTGTGTGCACTGCGTCTCCGCCGTCAATGCAAACGAAGTAAGAGGCACCGAGAGTCAAAGCTAAAATCCGCATTCAAGACAAGATGGCAGGGTTGCCCCGCAGGATCATTAAGgaaacaCAGCGTTTGTTGGCAGAGCCGGTGCCAGGTATAAAGGCAGAGCCAGATGAGGGGAACGCTCGCTACTTCCATGTGGTCATCGCCGGACCTCAAGACTCCCCCTTCGAGGGAGGAACTTTTAAACTTGAACTCTTTCTTCCTGAAGAATATCCCATGGCAGCTCCGAAAGTACGCTTCATGACCAAAATATATCACCCCAATGTAGACAAGTTGGGAAGAATATGTCTAGATATTTTGAAAGATAAGTGGTCTCCAGCCTTGCAGATCCGCACAGTGCTGCTATCAATCCAGGCATTACTAAGCGCTCCCAACCCTGATGATCCTCTAGCAAACGACGTCGCAGAGCAGTGGAAGACTAACGAAGCTCAAGCCATAGAGACAGcCCGAACATGGACCAGGCTTTATGCCGGAAACAATATTGAAGTGTAGAAATTGGTTGGGGAGGGAGCCGCAGACTTCTGCTATGAAGCGTGCATTAAAACTGACTGTCATTCGTCTGtccctttgtttttgttttgttttttttttttttcgtgggAGGGGGgtaactttttatatttcttttaaccTATTCTcgttgctttttcttttcttttttttaaacgaggAGCAGCAGACTAGCCCCCGTTTAGAGCACCCTTTCTGTCAAACCGAAGACCTACCCCGTTAGAAAacctagcaaaaaaaaacaaaaagtgtgttGTAAAACGGAAAGAGACTCCAGATGTAAACCACACGCAAACAGTAATTTCACCTGGGAAATGATTCAACTGGAAAGTCCTTCCACCATCACAGAAGCTGTTAAAGAcgtaaaaaaaaccctaatgtAGACTTGATTTGTGTTTTGGACTACAGGCGAGGTAGAGCTAGAGCGAAGGGAGATTTTGCGTAATATTTCTTTTAGTATAACAATTCTGTTAATGTATCcggttttagtgtttttgttttatctgtctTGCCATCGCTGTACTAATTGCACTCTTGAAACTCCATCATTGcgtgctttttattttgttgtgtcCGTCACAGTCCAGTGCATCGAAATTAATTTGTCCGTTTCTTCccttaagcatttattttgaaacgcCATGGTTGCGGGGAAGGGGGATGAAGTAAGATGAGTTGTGAGATTTTAGTAAAGGGTTGAGGGGTGGGAATGTCTGCACAAACATTGCAAAAGATCAATAAAGGCTTTGTCTCAATTTCCACGATTGGTCTTTGGTTAAAACGTCAACTTCAACCGTGTTTGTAAGTTCCCGCTTTCTACAGAAAGGGGAAAAAGAtcctgctttttaaaaaaaaaaaaaaaaatgtgatgacaACAGTCCACACACAtatttctgttctttctgtaaataaaatctgttgattaataagaaa

Function

symbol description
ube2na Predicted to enable ubiquitin conjugating enzyme activity. Acts upstream of or within DNA damage response, detection of DNA damage and protein polyubiquitination. Predicted to be active in nucleus. Orthologous to several human genes including UBE2N (ubiquitin conjugating enzyme E2 N).
ube2nb Predicted to enable ubiquitin binding activity and ubiquitin conjugating enzyme activity. Acts upstream of or within DNA damage response, detection of DNA damage. Predicted to be part of UBC13-MMS2 complex. Predicted to be active in nucleus. Orthologous to several human genes including UBE2N (ubiquitin conjugating enzyme E2 N).
ube2n Enables ubiquitin binding activity; ubiquitin protein ligase binding activity; and ubiquitin-protein transferase activity. Involved in several processes, including DNA repair; protein ubiquitination; and regulation of protein modification process. Located in cytoplasm; fibrillar center; and nucleoplasm. Part of UBC13-MMS2 complex; UBC13-UEV1A complex; and ubiquitin ligase complex.

NR:

description
ubiquitin-conjugating enzyme E2 N-like

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0051443 positive regulation of ubiquitin-protein transferase activity biological_process
GO:0033182 regulation of histone ubiquitination biological_process
GO:0042769 DNA damage response, detection of DNA damage biological_process
GO:0031058 positive regulation of histone modification biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0000729 DNA double-strand break processing biological_process
GO:0051092 positive regulation of NF-kappaB transcription factor activity biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0031372 UBC13-MMS2 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
K10580 UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264986.1 True 1817 mRNA 0.41 4 24527212 24534508
XM_043264987.1 False 1540 mRNA 0.43 5 24527211 24534508

Neighbor

gene id symbol gene type direction distance location
LOC122322916 LOC107749305,LOC107686322,LOC107553937,LOC107686321,LOC107553936 coding upstream 4724 24512132 ~ 24522487 (+)
LOC122322915 LOC107553937,LOC107749305,LOC107686321,LOC107686322,LOC107553936 coding upstream 24347 24493933 ~ 24502864 (+)
nr1h4 nr1h4,LOC107749275,LOC107686236,LOC107672305,LOC107740216 coding upstream 38290 24474237 ~ 24488921 (+)
slc17a8 slc17a8,LOC107553956,LOC107672209,LOC107686235,LOC107583818 coding upstream 54260 24460916 ~ 24472951 (+)
si:dkey-103i16.6 si:dkey-103i16.6,LOC107749280,LOC107664689,LOC107553976,LOC107672161 coding upstream 177054 24338891 ~ 24350157 (+)
nudt4a LOC107740279,LOC107672310,LOC107553971,LOC107686239 coding downstream 788 24535296 ~ 24549380 (+)
eea1 LOC107686240,LOC107583815,LOC107672259,LOC107740258 coding downstream 15924 24550432 ~ 24570221 (+)
LOC122362645 itpr2,LOC107672258 coding downstream 56395 24590903 ~ 24659950 (+)
LOC122362651 bhlhe41,LOC107686242,LOC107553967,LOC107672284,LOC107730473,LOC107583813,LOC107740304 coding downstream 137294 24671802 ~ 24675849 (+)
LOC122362647 ctsd,LOC107686244,LOC107672285,LOC107740314 coding downstream 143152 24677660 ~ 24683938 (+)
G128863 si:ch211-219a15.3,LOC107553954,LOC107583920,LOC107740237,LOC107672306,LOC105898028 non-coding upstream 2157 24524527 ~ 24525054 (+)
G128859 NA non-coding upstream 68277 24458719 ~ 24458934 (+)
G128857 arntl2,LOC107749276,LOC107686234 non-coding upstream 82012 24444502 ~ 24445199 (+)
G128856 NA non-coding upstream 84052 24442373 ~ 24443159 (+)
G128841 NA non-coding upstream 86679 24436038 ~ 24440532 (+)
G129038 NA non-coding downstream 129943 24664451 ~ 24728979 (+)
LOC122362653 NA non-coding downstream 132976 24667484 ~ 24669844 (+)
LOC122362654 NA non-coding downstream 200679 24735187 ~ 24737012 (+)
G129115 mgat4c,LOC107553950,LOC107740326,LOC107672194 non-coding downstream 304554 24839062 ~ 24856231 (+)
G129127 NA non-coding downstream 466222 25000730 ~ 25000930 (+)
G128858 NA other upstream 69651 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 790363 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 2088532 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 2115254 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3886152 20634845 ~ 20641059 (+)
LOC122323037 NA other downstream 49337 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 760235 25294743 ~ 25309740 (+)
mt2 NA other downstream 811884 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1386759 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 1417822 25952330 ~ 25962581 (+)

Expression


Co-expression Network