n4bp1 (n4bp1,LOC107549646,LOC107738738,LOC107743359,LOC107583777)


Basic Information

Item Value
gene id n4bp1
gene name n4bp1,LOC107549646,LOC107738738,LOC107743359,LOC107583777
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25772135 ~ 25782486 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043265011.1
TTTTCCGGGTGCGACGGATTGAGATGTAGGCTAGCAGGCTAACTGAGAGTAACGTCAAAACAGATACTACAGCGCTGTTGACTAACGTCAAGAGTCAGAGGGTGGGAAGTGAACATGAAGGGGGTAAACGATTCATTTTACAAGAGGTGTTTTTGAAAGTGAAGACGCCGTGATCTACACAGATTGatatagctaaaaataaaatgtcaacaacGCGGCCCCTCCTCGGGATGAAGCGAATCACCGAGGTAACCTGCACAGAGCCGCCGGGAGGCAGGCAGTCCCCGACCGCCGGCAGAGCGCAGTCCGAGTCGCTCACCGTAGACGAGTTCACGGTACACGAGGACAAGCAGACAGAGCTCAGGTGTAGCAAGCCGAAGGTCGAACAGGTTTTCCAAGTGACGTTTACTATTATTGGGCTCTTGGATCACACAGGAGCCCACGGAAGTAAGGCTTCCAGGCAGATCTGGCTCCAGCTGAAGGGAAAAAAGGAGGACGTGTCTAAAGCAAAGGAGTATGTGAAAGGCCTGTGTGACCCAGAGCTTCAGAAGGAAGAATGGTACCCAGTGGACATGCACTGCATTTTTGCTGGTGCTCGTGGACTATTTTTAGACCGGCTGCTTAGAGACACAAGTGCAGAGGTCCAGGTACTGGAACCGGGTCGTCTGAAGTTGAGCGGGTGCGCAGAGGCCGTTGTCATGGCCCAAAGTCGTGTTCAACAGTTTGTTGCCCTCTTTCAGGAGAAGCGAAGCTTGCCAGCTGACAGAGAACCCTTAGTTAAGCGCACCTTTAAGAATTTTGTGGAGGACCGAGCTGATAAATATGCCATGGAACTGCTTTTGCTGCCCAGTGCCCTCAAAGAGGAACTTTTGGGCTTGGCCCAAAGCCCCACACAGCCTTTAATTAGCATAGACCTTGAGCAGGACCGCTCCCAGACTAGCACACCTGTAACAGACCTCTCAAACCGTATCCTGGACACCACTTTTGAGGACAAAACCGCAGGTCCTACGTCCACTCCTGATGTTATGCCCGGTCTAAACGGTCGACCTTGCAACAAGCGGCGGTCTTCTGAAAGTGAGCAGAGGGACACTAAGAGGCAATACTCAttggagaggagagaagaggagcAGTTGGAAGAGCGACAGCGAGAGCCATGCCAAACTTGGACAGTTACGTCTGCAAAAGGAGCGCTGGCTGGTAGTGAATTGACAAATGAAAGTGAGGCAGTGAGTCCTGAGACTAACTTACGCTGTCTTGTTAACTTCTTCCGAACCATGGGCTACCAGCAGGAGGTTGTTGAGAGGGTGGTTCGTGAGACCGGGCAGACAGAGGACACGTTTTTGCTTCTAGAACGAATTGTGGAAGAGACTCAGAAGGGTCAGGGAGCACAGCGCACTTCTCGCACGCCCGACCCATCACCCTGTGCAAATGCCTCGTCCACCTCTACCTCCATCAGACTCAAAGAGAAGGAACGGACACAGACGAGAGCTCTCACAGAGATAAagtgcaaagaaaacattagaCCTCCTAGCACTAACGGCATAGGTCAGAAGAACCAGATAAGCAGCATGCCACTAGCTTCTACCACTCTTAAAAGAAACAATGGTGCACAGACTGATGTGTGTGAAGTGATTATCATCGATGACGATGATAATGACTTCACAGAGATAGAGAGGAAACCCAGAATTTCTGCACTCGATTTGAAATCTGAGTCCCGGTTTGATTACTTGCCCCGTGGTAGCTCTCAAACAATGGTTCCAGTACGGATGGAGAGTGTGACCAATCTCCGCAGCTCGTCTCAAGGCCCACCTCTCCGGAGCACCGACACACGACCAGGATGCTCTTACCAGACGCTTCCTGGACGGGCACCTTTACCTCGCCCTGAGGCACATAGCACCTCTAAACCAGCACCCCTCACCGGCATTTCTCGTTTCCAGCAATCCCTGAGAACCCCCTACCGACTAGTTCTACAAAATGAACCAGGCTGCCCAGATCTGCGGCACATCATCATCGATGGGAGCAATGTGGCAATGGCGCATGGACTCCATCGAATCTTTTCTTGTCGTGGGATCGCCATCGCTGTAGAGGCCTTCTGGCGCAGAGGGCACAGAGAAATCACCGTCTTCGTTCCTCAGTGGAGACAGAAAAAGGACCCTAACATCACTGAACAGCACTTTTTGAATCAGCTGGAAAACCTGCGACTTCTATCTTTCACTCCGTCTAGAGAAGTGTGTGGACAGAGAATTTCCTCCCATGATGACAGATTCCTGCTTCATTTGGCTGAGAAGACAGGAGGGGTCATTGTCACCAATGACAACCTGAGGGACTTTGTGAGCCAGTCAGAAGCATGGAGATGGATTATTCAGGAGAGACTCTTACAGTTCACCTTTGTTGAAGATCATTTCATGATCCCAGATGACCCACTTGGAAAGAATGGACCTCATCTAGATGAGTTTCTATTTAAAGACCGCCGAGGTAGTCCCATAATGGCCCCACCGAGGACAGACATTCGGGCAACCCCGTCAGTATACGCTTCATCGGCCCAGTCCACAGCACACCCCTCTTCCCCTTCCCACTGGCCACACTCTGGACCTCCAGACTGGCATCTTCCTCGTCCTTCCCCTTCTCCACCTCCACAGCGGTCACCATCAGAAACCACAGAGCTCAAAAGGAAGTTATACGACATCTTTCCTGACCAAAAGCAGCGCATCGACCGTATCCTCAGCGACAACCCATATATGAGGGACCTGAATGCTCTGTCTGGCCTTTTGCTGGGCTGACACACTTTTACACTCAAGATCGCAGTTTCCACAGTTGTGCATGGAGGTTACAGggctttttgtattattaaagaATACCATGATGGAAAAGCGCTGCTATGAGCTTTTGTTTGTTCAAGGGACTTtgtttaagcatttattttttccatcatCTAATTTAGATTCTAATATCCATAGCCCTCCGATTGACTGCAAGCACAAAAACCTAAGTTATAAGTTGTTTAAACGCTTTGAATATACGGGAATGTACAGTCCAAAATGGCATATATTTgatgtaaatatttgtgaaaaaaaaaatttctttccTATAAGTTATCCATTCAGAAATCTTTATTGTAAAAGGTGTTTCAGTTACACCGTGGTTCTAAACCAgctttgctttaattactgctgAAGGACACTTTTGATTTGCAGGTTTTGATATGGTCGTGCtttgtcatttctgtttttgtaaatattgacattattgAGCCAAATGAGTACTAGTTTCCAGTCACTCAAAGTGCCCTACTGAAGTGCCCTATCATCTGTTTGCAGCATAAAATTGCTCATTTCCTGTTAACTAATTTTAGTTCCTGTTAACTTTGATGAAGGTGACAAAATGGTATGCTGTTTCTAGGAATCCCTGGAGACCCCCGTATCACCCAGAGACTGTATGAAACAGATGGTTAAAAAAGTTCCCAGATTACTCAGTGAACTGGCACGTCCCTTTTTCTGCCCTGTTGTGCAAGCCACCATCTTTAAATAGCCAACCGGAAACCAGAGCCGTCACTGATGTAAACCTTTGTCCCAGTTACAACCATCAGAGGGTGCTGTGGGATTGCCAGCCTCATTATGTAACAGAAGACATGAACAAAATGCAATGCATAGTTGAAATTGTTTTCTGTTAGAGCATCTTATTGCCACTCAAGTGAATTTTCACTGTTACGGTTACTGCATcggcctctctctgtctctgaaaTGTGTTTAGCGTTGGACATTGTGAATTGGTATTCAATTTTGAGAATGAAAATGCATAGGCGTTAAACCCATGAAAGAGTCACAGACTCTGCAGGCACTGTGGGTATCTCACAGTATAGCTGCTGAAAACcttttgctttttctggaaGGCAGTGTTAATAAAAGCCAGTTATGTGTTTA

Function

symbol description
n4bp1 Predicted to enable mRNA binding activity; ribonuclease activity; and ubiquitin binding activity. Predicted to be involved in negative regulation of macromolecule metabolic process; negative regulation of viral genome replication; and regulation of innate immune response. Predicted to act upstream of or within innate immune response. Predicted to be located in cytosol and nucleolus. Predicted to be active in PML body. Orthologous to human N4BP1 (NEDD4 binding protein 1).

NR:

description
NEDD4-binding protein 1

GO:

id name namespace
GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0031397 negative regulation of protein ubiquitination biological_process
GO:0016605 PML body cellular_component
GO:0005730 nucleolus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043265011.1 True 3920 mRNA 0.47 7 25772135 25782486

Neighbor

gene id symbol gene type direction distance location
cbln1 cbln1,LOC107549644,LOC107583779,LOC106573707 coding upstream 109705 25656644 ~ 25662430 (+)
si:ch211-212o1.2 si:ch211-212o1.2,tmem189,LOC107738740,LOC107740306,LOC107672277,LOC107583780,LOC108264382,LOC106560866 coding upstream 132764 25614213 ~ 25639371 (+)
znf423 si:ch211-216l23.1,LOC107738741,LOC107583782,LOC107740334,LOC107672235,LOC107549642 coding upstream 160007 25471074 ~ 25612128 (+)
si:ch211-216l23.2 LOC107549641,LOC107740307,LOC107583785,LOC107672316 coding upstream 308032 25457998 ~ 25464103 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding upstream 314848 25445589 ~ 25457287 (+)
siah1 siah1,LOC107742888,LOC107549647,LOC106573709 coding downstream 4848 25787334 ~ 25803910 (+)
st3gal2 st3gal2,LOC107742884,LOC107672232,LOC107686287 coding downstream 71955 25854441 ~ 25875732 (+)
trnal-cag_32 NA coding downstream 114937 25897423 ~ 25897505 (+)
LOC122322950 LOC107549654,LOC107576747,LOC107672203,LOC107742895,LOC107686352 coding downstream 115056 25897542 ~ 25902915 (+)
arih1 arih1,LOC107742882,LOC107672283,LOC108423892,LOC107549652,LOC107686289 coding downstream 124433 25906919 ~ 25920975 (+)
G129370 NA non-coding upstream 95274 25676557 ~ 25676861 (+)
G129368 NA non-coding upstream 96825 25675071 ~ 25675310 (+)
G129360 NA non-coding upstream 108550 25662497 ~ 25663585 (+)
G129270 fam192a non-coding upstream 329694 25440048 ~ 25442441 (+)
G129262 NA non-coding upstream 423097 25348756 ~ 25349038 (+)
G129435 NA non-coding downstream 184530 25967016 ~ 26221023 (+)
G129438 arih1,LOC105007423,LOC107738728,LOC107686289 non-coding downstream 374421 26156907 ~ 26158502 (+)
G129427 NA non-coding downstream 377539 26160025 ~ 26160419 (+)
G129446 NA non-coding downstream 430444 26212930 ~ 26213344 (+)
G129455 NA non-coding downstream 549740 26332226 ~ 26335988 (+)
mt2 NA other upstream 423541 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 462395 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 1183798 24583845 ~ 24588337 (+)
G128858 NA other upstream 1314575 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 2035287 23457100 ~ 23736848 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 138781 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 169844 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 446608 26229094 ~ 26332010 (+)
G129468 cpt1b,LOC107710383,LOC107686536,LOC107599889,LOC107671150 other downstream 521401 26303887 ~ 26306806 (+)

Expression


Co-expression Network