vps9d1 (vps9d1,LOC107749294,LOC107553982,LOC107670156,LOC107748773)


Basic Information

Item Value
gene id vps9d1
gene name vps9d1,LOC107749294,LOC107553982,LOC107670156,LOC107748773
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23937000 ~ 23952211 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043265074.1
GCTGCGGGTCGTCGACGGACTCGCGCGATTGTTTTGGCAGGATGGCCGCTCCTGTCAGTGACGGCAGTCAGAGACCGCTGCAGAATGCCATGAGACTTGTAAAAGTGGCCATTCAGCTGGATACCGGCAACAGACACGAGGAGGCATACTGTGAATATTTGAGAAGTATCAACTACATCTCTCATGCTCTGCTTGAAGATGCCACATCTAAACAGGAGGTAGAGATGGAGTCGGTGGAACTGGAGAAGATGGTGAAACTTGTTGAGCAATGTTTAGAGAGGGTTAAATCATGCAtcataagaaagaaagaatccTCAACACCTATCTCCTCCACTCCTCTACCCACCTGTCCGGCTATTAATGCGACAAATCATCCCAAAACAACAGATAAACTTAATGCAGCTGCATTGGTTTCTGAGAGCCAAAGTAAAGAGCAGCCCTCCAGACATCGCAGAGTCCTCTCTGAGGGAGGGGAGACGGACTCCCCCTTCCTGCCACCTGAAGTCTTCCAGAAGCTTCAGTCAATGGAATCACAAGACAACCGAAAGGAATTAACGCCTATTGAAGAAGCCTCGCGTCTCAACCAGAAACTTAAGGCTAATTATGAGGCTCGGCTGGCAAGACTTACGCCTGGTCAGGCCACACAAAAAACCTCATTGACTCTTTCACTTCAGAGGCAGATGATGGAGAATCTTATAATCGCCAAAGCCAGACAAGATGCACTTCAAAGAAAAATGGAGGAAAGGAGACTCAGGTTGCAGGAAGAAGCAAACAGgaGGTTTGCGACCTGTGGGACCATGACACCTGAGGAACAAGAGCAGCGAGTTCTGTATGCAAGTGTGCTTGAATATGAGCAAGATCATGAATGGCCAAAAATCTGGAAAGCTAATCTGAAAAAGAATCCAAATGATCCTGTGCTGGTTTCAGGTCTTCTTTCGTGTCTTCTCAGCTATCCAGACCATCCGGTCATGAAGTTGCTGAAGAGGCTTCAGTATCGGGTGTATAACAGACTGTATCCTATAGTGAGCCAGTGCATTCCTCTGAGCACAGCGTTCGGTCACTCGCTGCCCTTAAAACCCTCCCGCAGCGCCCAAAGCCTGTTCCTGTCCGACAGTTTTGTGTctccgcagcagcagcagagccCGCTCAAATCCGCAATGACACACAGCTTATCTGATGCCTCCATCTCCCTGTCTCCATCCCACGACCTCAACGCCAACGACACAAAGTCTGAGACAGACCCGGATGAGCCCTCAACTCTGGTCTCCACAGATAGGGAGAACTCTTTTGAGGATCTAGAGAAGTTTCTTACTCAGCTGGACTGGGTTCCTTCTCACAGTGGTGATGATACGGACTCTGATGTGACTTTTGACACAACACACATGGACCTAGAGTCTCATATTACTAATCTTGAGGAGCGTGCTTTGAAGGAACATTTGAAGGCCATCGTCAAAGACATCCACAATGCTATCGATCGCctgctgtctctgtgtcttctcTCTTTTGAATGTCTCAACACTGCAAATTCTAAGGACCAATGCGTGGCAAGTATAGAGGAAGTCTTCTTCACCCCTATTTGGCGCCCTCTTTTGGCACTTTTTAGGAAGGTGCATCAAGAACGGGAGCTGGCTATTGAGAGCAGCATGCGTCTTCATTGTAATGTTTCACCTGGTGATGTTGGTGTTCCATCTAAATTGTTCCCAAAAGACACCGCTCTGCTGCATGGTTCCTATCCATATGAGTCAGCCGTGCAGGAGCTGAAGCTTCTGTGTAGAGACTATTGTCCTCAGAAGAAATTGGAGTGTATTGTGAGAACTCTACGAATCATCTGTGGATGTGCTGAAGAGTACCGCCTCCTGCAAGAAAACGATCCTCCACCCAAATCAGCAGCAATaggTGCCGATGACCTGTTGCCCATCCTGGCGTTTGTGGCTTTACGCAGTGAAACGCCTCAGCTGGTGTCTGAATGTGCCGCATTGGAAGAGTTCATTCACGAGGGGTATCTGATCGGAGAGGAAGGGTACTGCCTGACGTCAATGCAGAGTGCGCTGACCTACGTTGAGTCATTGCTCTTGGGTGGGGCTCCACCCCCCGCTGCCAAACCCACCTGACGTAGGTGCCTCAGCCGACGGAAAGATCTCATCGTGTTTGACAGTCCTCAGGAGTTGGTGAATCTCCTCTGCTCAGACTGTTCAAGTCCCAAATCAGGCCAGACTTCAGTTCTGTTCAAATCTTCTTCACCTACTGCTTTTGAAGGGACTGGAGAAGgttattcagtgtttttgggAGCTACAGGACGGGTTCTGAATATGGGATCTGAATGTGGTTAGAAGACCAGTATTGTagccaaagcaaaaaaaatgttgagacTGAATGGGATGAGCCAGATGTTAGGAAAGGGTTTGTGGAAAGgttagttaaaatgtaattttatatatatatatgcgcaaATGTGATTGCGCCTATTCTAATCccattgatatatttttttttttttttttttttttttttttggtcaaaatatattt
>XM_043265075.1
GCTGCGGGTCGTCGACGGACTCGCGCGATTGTTTTGGCAGGATGGCCGCTCCTGTCAGTGACGGCAGTCAGAGACCGCTGCAGAATGCCATGAGACTTGTAAAAGTGGCCATTCAGCTGGATACCGGCAACAGACACGAGGAGGCATACTGTGAATATTTGAGAAGTATCAACTACATCTCTCATGCTCTGCTTGAAGATGCCACATCTAAACAGGAGGTAGAGATGGAGTCGGTGGAACTGGAGAAGATGGTGAAACTTGTTGAGCAATGTTTAGAGAGGGTTAAATCATGCAtcataagaaagaaagaatccTCAACACCTATCTCCTCCACTCCTCTACCCACCTGTCCGGCTATTAATGCGACAAATCATCCCAAAACAACAGATAAACTTAATGCAGCTGCATTGGTTTCTGAGAGCCAAAGTAAAGAGCAGCCCTCCAGACATCGCAGAGTCCTCTCTGAGGGAGGGGAGACGGACTCCCCCTTCCTGCCACCTGAAGTCTTCCAGAAGCTTCAGTCAATGGAATCACAAGACAACCGAAAGGAATTAACGCCTATTGAAGAAGCCTCGCGTCTCAACCAGAAACTTAAGGCTAATTATGAGGCTCGGCTGGCAAGACTTACGCCTGGTCAGGCCACACAAAAAACCTCATTGACTCTTTCACTTCAGAGGCAGATGATGGAGAATCTTATAATCGCCAAAGCCAGACAAGATGCACTTCAAAGAAAAATGGAGGAAAGGAGACTCAGGTTGCAGGAAGAAGCAAACAGgaGGTTTGCGACCTGTGGGACCATGACACCTGAGGAACAAGAGCAGCGAGTTCTGTATGCAAGTGTGCTTGAATATGAGCAAGATCATGAATGGCCAAAAATCTGGAAAGCTAATCTGAAAAAGAATCCAAATGATCCTGTGCTGGTTTCAGGTCTTCTTTCGTGTCTTCTCAGCTATCCAGACCATCCGGTCATGAAGTTGCTGAAGAGGCTTCAGTATCGGGTGTATAACAGACTGTATCCTATAGTGAGCCAGTGCATTCCTCTGAGCACAGCGTTCGGTCACTCGCTGCCCTTAAAACCCTCCCGCAGCGCCCAAAGCCTGTTCCTGTCCGACAGTTTTGTGTctccgcagcagcagcagagccCGCTCAAATCCGCAATGACACACAGCTTATCTGATGCCTCCATCTCCCTGTCTCCATCCCACGACCTCAACGCCAACGACACAAAGTCTGAGACAGACCCGGATGAGCCCTCAACTCTGGTCTCCACAGATAGGGAGAACTCTTTTGAGGATCTAGAGAAGTTTCTTACTCAGCTGGACTGGGTTCCTTCTCACAGTGGTGATGATACGGACTCTGATGTGACTTTTGACACAACACACATGGACCTAGAGTCTCATATTACTAATCTTGAGGAGCGTGCTTTGAAGGAACATTTGAAGGCCATCGTCAAAGACATCCACAATGCTATCGATCGCctgctgtctctgtgtcttctcTCTTTTGAATGTCTCAACACTGCAAATTCTAAGGACCAATGCGTGGCAAGTATAGAGGAAGTCTTCTTCACCCCTATTTGGCGCCCTCTTTTGGCACTTTTTAGGAAGGTGCATCAAGAACGGGAGCTGGCTATTGAGAGCAGCATGCGTCTTCATTGTAATGTTTCACCTGGTGATGTTGGTGTTCCATCTAAATTGTTCCCAAAAGACACCGCTCTGCTGCATGGTTCCTATCCATATGAGTCAGCCGTGCAGGAGCTGAAGCTTCTGTGTAGAGACTATTGTCCTCAGAAGAAATTGGAGTGTATTGTGAGAACTCTACGAATCATCTGTGGATGTGCTGAAGAGTACCGCCTCCTGCAAGAAAACGATCCTCCACCCAAATCAGCAGCAATaggTGCCGATGACCTGTTGCCCATCCTGGCGTTTGTGGCTTTACGCAGTGAAACGCCTCAGCTGGTGTCTGAATGTGCCGCATTGGAAGAGTTCATTCACGAGGGGTATCTGATCGGAGAGGAAGGGTACTGCCTGACGTCAATGCAGAGTGCGCTGACCTACGTTGAGTCATTGCTCTTGGGTGGGGCTCCACCCCCCGCTGCCAAACCCACCTGACGTGCCTCAGCCGACGGAAAGATCTCATCGTGTTTGACAGTCCTCAGGAGTTGGTGAATCTCCTCTGCTCAGACTGTTCAAGTCCCAAATCAGGCCAGACTTCAGTTCTGTTCAAATCTTCTTCACCTACTGCTTTTGAAGGGACTGGAGAAGgttattcagtgtttttgggAGCTACAGGACGGGTTCTGAATATGGGATCTGAATGTGGTTAGAAGACCAGTATTGTagccaaagcaaaaaaaatgttgagacTGAATGGGATGAGCCAGATGTTAGGAAAGGGTTTGTGGAAAGgttagttaaaatgtaattttatatatatatatgcgcaaATGTGATTGCGCCTATTCTAATCccattgatatatttttttttttttttttttttttttttttggtcaaaatatattt

Function

symbol description
vps9d1 Is expressed in brain; forebrain; and neural rod. Orthologous to human VPS9D1 (VPS9 domain containing 1).

NR:

description
VPS9 domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043265074.1 True 2528 mRNA 0.47 16 23937000 23952211
XM_043265075.1 False 2524 mRNA 0.47 16 23937000 23952211

Neighbor

gene id symbol gene type direction distance location
utp4 utp4,LOC107749295,LOC107553989,LOC107748774,LOC107583899 coding upstream 690 23928290 ~ 23936310 (+)
wfdc1 wfdc1,LOC107553961,LOC107749317,LOC107684670,LOC107583842,LOC107670154 coding upstream 9412 23915929 ~ 23927588 (+)
si:dkey-246g23.4 si:dkey-246g23.4,LOC107553963,LOC107684669,LOC107749297,LOC107738435 coding upstream 25018 23899926 ~ 23911982 (+)
kcng4a kcng4a,kcng4,LOC107749318,LOC107553964,LOC107738382,LOC107684667,LOC107670163 coding upstream 44835 23859036 ~ 23892165 (+)
si:dkey-246g23.2 si:dkey-246g23.2,LOC107749300,LOC107553994,LOC107684666,LOC107670153,LOC107738383,LOC108415329 coding upstream 83725 23818053 ~ 23853275 (+)
spata2l LOC107670151,LOC107748780 coding downstream 5950 23958161 ~ 23961023 (+)
uri1 uri1,LOC107553985,LOC107684674,LOC107670159,LOC107583840 coding downstream 10817 23963028 ~ 23970059 (+)
LOC122362775 cdh13,LOC107722459,LOC107684661,LOC107738387 coding downstream 182202 24134413 ~ 24181542 (+)
cry1b cry1ab,LOC107672239,LOC107553944,LOC107583830 coding downstream 325071 24277282 ~ 24286775 (+)
zgc:153031 zgc:153031,LOC107664682,LOC107583831,LOC107672313,LOC107553959 coding downstream 334927 24287138 ~ 24291459 (+)
G128725 NA non-coding upstream 149837 23785024 ~ 23787163 (+)
G128699 NA non-coding upstream 577443 23358451 ~ 23359557 (+)
G128696 NA non-coding upstream 599911 23335791 ~ 23337089 (+)
G128476 NA non-coding upstream 856690 23068310 ~ 23080310 (+)
G128475 NA non-coding upstream 869932 23066812 ~ 23067068 (+)
G128753 NA non-coding downstream 76278 24028489 ~ 24029817 (+)
G128770 NA non-coding downstream 104509 24056720 ~ 24063271 (+)
G128772 NA non-coding downstream 106142 24058353 ~ 24066103 (+)
G128803 NA non-coding downstream 344898 24297109 ~ 24297333 (+)
G128804 NA non-coding downstream 345398 24297609 ~ 24297845 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 200152 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 1498321 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 1525043 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3295941 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 3336481 20589684 ~ 20600519 (+)
G128858 NA other downstream 497554 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 631634 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 1342532 25294743 ~ 25309740 (+)
mt2 NA other downstream 1394181 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1969056 25921267 ~ 26174156 (+)

Expression


Co-expression Network