lmf2a (lmf2a,LOC107564898,LOC107686567,LOC107600131,LOC107662891,LOC107735523,LOC107705770)


Basic Information

Item Value
gene id lmf2a
gene name lmf2a,LOC107564898,LOC107686567,LOC107600131,LOC107662891,LOC107735523,LOC107705770
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20311779 ~ 20321200 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043265078.1
CGGCGTGCGGCGCGCGTCTCTGCACGTCGGATGTGTCGCCGAGTCTCAGTCCCGTGCGTTCAAACCTCCCTGATCTCCATCTTGATGAGAATCCTAAGTTGCTCCCGTCTGTTTCTTTTAGGAgtttactgaacaaaaaaatgGGTGATATAAGGCTGCCGAGGCACATGTTCTTGTGGTGCCTGTCTGCTATTTATATGTTTGCCTTCGCGTCTCTTTACGTGCAGATTCCAGGTCTGTACGGGAACGAGGGTGTGCTGCCGGCTCGATGGCAGCTGCGGGTGTCTGGGAAGAGTGTTGCGGAGCAGCTGAAGGATTCTCCCACGCTGCTGTGGTTCGGTCCTCGTCTGGGTTTGGACACGCAGCAGTGCATGGAGCTGCTGAGTCTGACCGGAGCTCTGCTCGGTTTAATGACGCTGGCTCTGCCGGTGCTCAGAGACTGCAGGGTCTTCCTGGTGCTCTGGGTTCTCTACCTGTCCGTCTACCAGGTGGGCCAAGTCTTCTTATACTTCCAGTGGGATAACCTCTTGCTGGAGGCGGGTTTCTTGGCCATTCTCATCGCTCCCCTGAAAATGCCCTGGTCCTCGAAGGTGCGTCTCCACGACGGCGTGACTTTCTGGCTGACGCGCTGGCTGTTGTTTCGGCTGATGTTTGCGTCTGGTGTTGTCAAACTGACCAGCCGCTGTCCCACCTGGTGGGGCCTGACCGCTGTAACCTATCACTACGAGACCCAGTGCATACCGACTCCTCTGGCCTGGTTTGCTCATCAGCTGCCGGTCTGGTTCCAGAAGCTCAGTGTGGTGGGAACGTTTGTTATCGAGATCGCCGACCCCTTCCTGTTCTTCAGCCCCGTACGACGACACAGACTCGCCTCCTTCTACCTGCAGGTCCTGCTTCAGGTGTTCATCATCCTGTCTGGGAACTATAACTTCTTCAATATCCTCACCATCACCCTGTGCCTGTCGCTGCTGGACGACCAACACGTGAACTTCTGGCTGCGAAGACCCACGGAGAAGACGGAGAGCACATCATTGCAGACTCTGTTCTGTGGTCTGGCGGTGATGTTCGAGATCGGGACGTACGCTCTGCTTGGCTACTGGACCGTCAAATACTTTGGCCTCCAGGTGGATTGGGAAAACAAAAGCGTCCTTTCCAAAACAGCATTTACGTATTTTGAGTTCAACGGCTTCCTGAAGACGGTCACAGTGCCCAGCATCTGGATTGGTGTGCTGTCTCTCACGTGGGAGATCATCTCCTCCATGTTTAAgtgtgcgtgtgtgagaggagTGTTGTGGCGTCTCTGGAGCACAATCCAGTGGGCAGTTATGGCTGCGGCTACCGTCTCCATGTTTGCCATCAGTCTGGTTCCTTACACCTACATCGAGTATGATGCACATAATAACCTCTGGCCTGGCGTCCGGGCAGCGTTTGATCTGACTGACCGTTACCAGCTGGTCAACTCGTACGGATTGTTCCGGAGGATGACCGGAGTCGCCGGCCGTCCAGAAGTGGTCATTGAGGGCAGTATGGACCGCAACACATGGACGGAGATTGAGTTCATGTATAAACCGGGGAACATGAGCGCAGCGCCCCCTGTGGTGGCTCCTCACCAGCCCAGGCTGGACTGGCAGATGTGGTTCGCTGCTCTGGGGCCTCACACACAGAGCCCCTGGTTCAGCAGCCTCTTACACAGACTCCTGCAGGGCAAACGAGACGtgaTCAGACTCATTCAGACAGATGAGTCTCAGTATCCATTCAGCAAACAGCCTCCTGTGTACCTCCGAGCTCACCGCTACAAATACTGGTTCAGTGAGCCTAAAGACGACGGgtcATATCCCCAGCGATGGTGGAGACGGGTGTATGTGGAGGAGTTCTATCCCATGGTGCACCTTGGTGACTCTTACCTTGAACAGATGCTGGTTCAACATGGTTTGAAGGATAAGGTTCCTCCGAGGCGCAGCTCGAATGCGCTCCCTCAGATGTTGCGTCACGTGGGTAAACGCGTCCGTGAGATGCCAGCTCCTCTTCTGCTCTGGACTCTCTTCAGCTCGGCCGCGACCGTGTGTCTCCTCAACTCTCTGAGATCTCGTCCGCACCACCTCCAGCACGAATCGGTCCAGAGCAAACGCTCAGCAGAGCGCTCCGGCGTGGTGCAGGAGGACGAGAAGAAacacgaggaggaggaggaggacgagaaGAAacacgaggaggaggaggcagaAGAAGATGGACTAGAGCAGGAAGAAGATGCATCAAGTGAAGAAGAACAGGAAGGAGAACTTGAAAGGGAAGTAAACGCAGGGGAAACGGAAGAGGACAGCCTCAGGAAAAGGAAGTGAGGACTTCCGATCATCTGAGGACTGTGATTCCAGCTCAGGGTAATAACATCCACCCCAAAACACCAGCACTTCCACCCTGGTTGTGTCGAAACATTGGCTTTTCTGTTTTCACAGGCAGGTTTGTGAGATGTAGGCAGCGTAGTGATGCATTCGTGTTGATTTATCCGCCAGTTCTGTTGTATGGTCTTCGATTGCTTTGACAGGTAAATGCAAAACAAGGTAGGTTACTGTTTTGCACCAACTGCTACATGCCACACTAAAGGATGTTTTCCACCATGAGAcctaaaaataactgtaaaaatgtacttttaaatgcaCATGCTGGACTTCATTGAACTACGCTTTGAATCGAACGCAACAAAATACCAAAAACTGCACTTTTGACTTGATGGACAATTTAGACAAccatttattgttttgtgaaCGAAGCCCAGTATGCGCTGTGCCTTACAGTATGCCAGGAGTATCAGAGAAATCGATGTAcctgtttaaaatgacatttaagtaGTTTTCCCCTTCGACTGTCATGTTGTATAGGTGGTAATATATTATATGACATCAAATGGTTTATTAGACCGTAACTGGTTATGGTCTGTGATATTTGTGTATTGTAATAAGATTTTTGACCACTGTCATGTACAGTAGTATTGCATGCTTAATATAAGTGAAAATGCACCAAAAAAgctttaatgttttgtaatatttttaataaacatagaAAAATATA

Function

symbol description
lmf2a Predicted to be involved in protein maturation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human LMF2 (lipase maturation factor 2).

NR:

description
lipase maturation factor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043265078.1 True 3066 mRNA 0.51 16 20311779 20321200

Neighbor

gene id symbol gene type direction distance location
c2cd5 c2cd5,LOC107686569 coding upstream 646 20286465 ~ 20311133 (+)
b4galnt3b LOC107705801,LOC107686572,LOC107564911,LOC107735491,LOC107662894 coding upstream 33283 20259769 ~ 20278496 (+)
fkbp4 fkbp4,LOC107686573,LOC107705800,LOC107564896,LOC107662895,LOC107735478 coding upstream 55332 20250402 ~ 20256447 (+)
wash1 wash1,LOC107564895,LOC107686618,LOC107662897 coding upstream 72978 20230154 ~ 20238801 (+)
ptprq ptprq,LOC107705767,LOC107662847,LOC107564908,LOC107564907,LOC108413201,LOC107683214 coding upstream 113964 20160121 ~ 20197815 (+)
dnaja2b dnaja2l,dnaja2,LOC107735561,LOC107705812,LOC107686561,LOC108438176,LOC103026191 coding downstream 43531 20364731 ~ 20371597 (+)
LOC122363067 LOC107559703,LOC107686559,LOC107662909,LOC107576256 coding downstream 92816 20414016 ~ 20422329 (+)
si:dkey-88e18.2 LOC107686617,LOC107733267,LOC107560122 coding downstream 118944 20440144 ~ 20445367 (+)
vwf vwf,LOC107600553 coding downstream 149901 20471101 ~ 20504374 (+)
LOC122323072 LOC107559655,LOC107686551,LOC107733270,LOC107662882,LOC107736185,LOC563500,LOC107600544 coding downstream 184831 20506031 ~ 20531579 (+)
G127780 NA non-coding upstream 30484 20256712 ~ 20281295 (+)
LOC122363139 NA non-coding upstream 87195 20221304 ~ 20224584 (+)
G127766 iqsec3b,LOC107564909,LOC107705799,LOC107735425,LOC107662846,LOC108413205 non-coding upstream 96548 20202748 ~ 20215231 (+)
G127663 NA non-coding upstream 320143 19985741 ~ 19991636 (+)
G127637 golim4,LOC107662907 non-coding upstream 386977 19781765 ~ 19924802 (+)
G127785 NA non-coding downstream 4130 20325330 ~ 20383758 (+)
G127800 NA non-coding downstream 52654 20373854 ~ 20375835 (+)
G127860 NA non-coding downstream 240883 20562083 ~ 20572310 (+)
G127873 LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654 non-coding downstream 264851 20586051 ~ 20588863 (+)
LOC122363025 NA non-coding downstream 320565 20641765 ~ 20647708 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 218178 20067678 ~ 20093601 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other upstream 296073 20003004 ~ 20015706 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other upstream 1023223 19269611 ~ 19288556 (+)
G127500 NA other upstream 1470244 18730690 ~ 18841535 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other upstream 1659615 18646362 ~ 18652164 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other downstream 224792 20545992 ~ 20549357 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other downstream 229948 20551148 ~ 20556627 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other downstream 268484 20589684 ~ 20600519 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other downstream 313645 20634845 ~ 20641059 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 2079744 22400944 ~ 22411957 (+)

Expression


Co-expression Network