CI01000001_04465168_04466295 (CDC42.L, CDC42L2, CDC42P6, CDC42)


Basic Information

Item Value
gene id CI01000001_04465168_04466295
gene name CDC42.L, CDC42L2, CDC42P6, CDC42
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4463257 ~ 4466918 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04465168_04466295.mRNA
ATTCTTTGATGCCAGATGCTGGAAAACAACTTATGACAACTGTGATGTCCACAATTAAATGCGTGGTGGTTGGAGATGGTGGCGTGGGTAAAACCTGCCTTTTGGTTTCATTTACAAACAAGTTCCCATCAGAACCAACAGTATTTGACAGCCAAGCTGTGTCTGTAACGATTGGCGGTGAACCATATACCATTAGATTATTTGATGCTGCAGGTCAGGATCAATTACGGCCCTTAAGCTATCCTCAAACAGACGTCTTCTTAGTTTGTTTCTCTGTAGTTTCTCTTTCCTCGTTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACCTATTACTCCCCGAAAACCCCTTTTCTGCTGGTTGGAACTCAGATTGACCTAAGAGATGATCCTATAACTATTGCAAGGCTTGCAAAAAACAAACAAAAGCCAATCAAACCAGAGACAGCTGAAAAACTAGCCAAAGATTTAAAGGCTGTGAAATATGTTGAATGCTCTGCTCTAACACAGAAAGGACTGAAGAATGTATTTGATGAGGCGATATTAGCAGCTTTAGAGCCCCCAGGGTCCCAGAAGACATGCAAATGTGTTATTTTATGAGCTGGACACAGCAACTAACAACGAACTGGATCTTTTTTTTCTATGGGTTTTTATCAGGAAAGTAACAATAGCTTTGGTATGGTACCCATGTCACATGATGGGATCGTATGTGTGCAGCATTTACACATACAGCTCGCTTTTGTGATACTAAAACACAGTCCCTTCAAGATTTTTTCATAACAAAAATGTTAGTAGGGTAAAGTGGGGTAAGTTGTGCCACTTTTTATTTAAGTTGTCAAATAGGAAAAGGAGAAATGTGAAGTACATAGAAGAAAATAGGCCAATTTATATGTGTGGATGTCTGTCATGAACTGAATTTAGAAGACATCATAAAGCCATACTTAAAAAAAATTAAA
>TU17363
GTTAATAATATTCACAAAAAGAATTTTACACAAATGACATTCTCATAAAAGATTATTTTCTAAGAAGATGTAAGCAGCATTGCAGAACACACTGGTCAGACTAAAATCAATACATTAAACCCAAGATTTTAAGCCTGGGGCCCTTGGGAAAAATGTGAAACAGAACATTTTCTTATATTGTCCTAACATTTCTAACAAATTACCTTATAAATCATGTTCTTCATTGAAGTTATTTTAGGTCCCTGGGTTGACAAATTGGGATATTCAACAAAAAATGTGCCATTGAATATACTCAAGCCAATTTAATATTACAGAATGAAGCCTTTTCTTTAGGGTTTCTTAACTACTTGATGACTGAAACTCAATAACCACTTTTCATGGCTAAATAGTTGTCATATTGAAAATGACACTTAGCAGAGCTAAAAGGAAATAAAAAAAAAACATGTGGCTTATAAAGTGAAGCAATTTACACCAAGATGGTTTTTTACTTTAATGTATTTTGTAGGAGACACAAATCCACAATCGAAACTGCCCTTTATGCTGCTTTTTCTTTCTTTTTTTTCTTTGCATGTAAGCAGCCTAACCCCCTCTATAAACTGAATAGCATTTATTATGAATTACAGATTCTTTGATGCCAGATGCTGGAAAACAACTTATGACAACTGTGATGTCCACAATTAAATGCGTGGTGGTTGGAGATGGTGGCGTGGGTAAAACCTGCCTTTTGGTTTCATTTACAAACAAGTTCCCATCAGAACCAACAGTAAGGATTTTCTCTTTTTTCAATTATGTACGCAGTACTATTGCTCTGATTGATATGTTCATCTCGACCAGCTTAAGAAAGAGAAAAATTCAACCTTTGTATCCATTATCAGTGATAGACTGTTAAATCCCATCAGTTGCAACACACATGGAAATAATCCTATCAAAGTAGTGTCAATTCAGCTGTTTTGTCATGTTCTTTTTCAGGTATTTGACAGCCAAGCTGTGTCTGTAACGATTGGCGGTGAACCATATACCATTAGATTATTTGATGCTGCAGGTATATGATAATGCAATTGATGAAGCAGTATCAACTTACAGTACAGTGTGAGGAATATCTTAAACCTGTCCCAGTCAAACCTTTCAGATTTCATATGTACACAATTTGCGCAAAACCGATCCTCACAAACCTAAATATTTCAATATTTTGTAGGTCAGGATCAATTACGGCCCTTAAGCTATCCTCAAACAGACGTCTTCTTAGTTTGTTTCTCTGTAGTTTCTCTTTCCTCGTTTGAAAATGTGAAAGAAAAGGTGAGTCTGTATGTGATCTGTTAATAATGTAGAATCATTTATTGTTTGCTAACAACAATTCATTTGAAATGCAGTGGGTGCCTGAGATAACCTATTACTCCCCGAAAACCCCTTTTCTGCTGGTTGGAACTCAGATTGACCTAAGAGATGATCCTATAACTATTGCAAGGCTTGCAAAAAACAAACAAAAGCCAATCAAACCAGAGACAGCTGAAAAACTAGCCAAAGATTTAAAGGCTGTGAAATATGTTGAATGCTCTGCTCTAACACAGGTGGGTATGCTCATCAATATGTTCTGTTTCTAAAGCCATGCTTTTGCTTTATTAGCATAACAAATGGAGATTCACTTTTTCCCTTCGTTACAGAAAGGACTGAAGAATGTATTTGATGAGGCGATATTAGCAGCTTTAGAGCCCCCAGGGTCCCAGAAGACATGCAAATGTGTTATTTTATGAGCTGGACACAGCAACTAACAACGAACTGGATCTTTTTTTTCTATGGGTTTTTATCAGGAAAGTAACAATAGCTTTGGTATGGTACCCATGTCACATGATGGGATCGTATGTGTGCAGCATTTACACATACAGCTCGCTTTTGTGATACTAAAACACAGTCCCTTCAAGATTTTTTCATAACAAAAATGTTAGTAGGGTAAAGTGGGGTAAGTTGTGCCACTTTTTATTTAAGTTGTCAAATAGGAAAAGGAGAAATGTGAAGTACATAGAAGAAAATAGGCCAATTTATATGTGTGGATGTCTGTCATGAACTGAATTTAGAAGACATCATAAAGCCATACTTAAAAAAAATTAAACACCATGACACACATAGGGGTAAGTTGTGATATGTCAAGTTGAGTCATTGGGTAATGTCAGAGAAATGTGCATTTTAAATAAAAATATGAAAAAATATTTATACAGAAAGATCTTGCTGCACATTATTCACATTTCCTTTAAGAATATCCATAAAACTCTCACAGTGTTTCAATGTGGTGTCAAAAATATGGTTTTATTACTTTGGCATGGAGGAAAAATGGTCAGAATCACCTTTTCTCATGTTACTTCTCAAACATGGCCCTTTTTAAATATAAACAGCTAAATACTTATTTATACTTAGTGAAAAAATAAATACAAATACAGAATGGTTATGACATAGTCTTCAAATTATGTACAACAATAAGAGATGCACTTATAATTTTCATAAGGCTTTTAAGGTAACCATTACGTAGAACAGCGTTTCTCATAACAGAACCAATTCAAACAGGAAAACACTCCCTCTCTGCAGCTGGACAGCAGAGTTGGGGTACGTGAGCTCGGACTCGAGTCCAGCTTGCACTTGTCACGGACTCGGATGCATTTTACTCTCAAAAAAAGTGTCAGAGTGCAACTGAATCCAGTGTTGTCTGTGATTGTGTCACGAAAATCTATCATTTGCATTGGCGTTTTTAAATCTTATTTGAAACCGTAATATTAATTTTAGATGTTTTAAAAAAACATTGATGCATTATTAATAATAAATAGCACTTTTATTTTCCTCATATCATTTACATCAACAATATGGTTTATTTTAAATAATTTCATTATTGTCCGTTTCCATGCTATTCATCCATGGCACATGCATTTTGATTCTTTATAGCCTACTCAAGTAATGTTGTCCAATGACTTGTTTGCATTATTTAGGCATTCTTTTATTTATTTGTAAGTTAATATATATATTTTTGTTTGTTTGTTTTGATAAAGTTGGCCATAGGAGTGTAAAATGAATTTTTAAAACATGGGACATGTTGGGACATGGATTGAGACTTTTGTTTTTGCAATCAGGCTCTCAAAAATTATATACAAATTTGGATTTAGATTTATCGGTCAATATATCGGTTATTGGCTTTCAAATATAAAGAATTATCGATTATCGTATTCATATCGGGGCATCCCTAACTTAATGACTTATTGACATACAGTAATATTTAGTTGGACTCGACTAAGATTCAGCTCTTTTGGACTCGCATTTGAGTCCGACTCGGCCCCTTTTGGACTTGACTCGGACTGTAATAAGTTGGACTCGAACCCTACTCTACTGGACAGATCTCCACACTACTGTTAGTGACCCGTATTCCATACCAGCCTGCCCAGACCTGTGTATCCTTCCCACCGTGAGTGAAACGGATAAACAGAACTCCAGGTCCGTAATCCTTAAAGACGTGTGTCATCTGAAATAATAAAAAAAAAACATACATATAGTGACAATGGCACAGTTATTTGATAAGATTCGTTTGTTAATTTTCTTTTTGTCTACTCACTTCACACCACTGCTGATCGTTCCACTGTTGAAAGAAAACATTCTCAGGCTCAAAGGTACTGATGGGTTTCTTT

Function

symbol description
cdc42 Predicted to enable GTP binding activity and GTPase activity. Involved in cell surface receptor signaling pathway; positive regulation of cell migration involved in sprouting angiogenesis; and positive regulation of filopodium assembly. Acts upstream of or within several processes, including camera-type eye development; melanosome transport; and plasma membrane bounded cell projection assembly. Predicted to be located in midbody and plasma membrane. Is expressed in blastodisc; brain; eye; and pronephros. Human ortholog(s) of this gene implicated in fibrosarcoma. Orthologous to human CDC42 (cell division cycle 42).
cdc42l2 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including Cdc42 protein signal transduction; cell projection assembly; and endocytosis. Predicted to act upstream of or within cell division and small GTPase mediated signal transduction. Human ortholog(s) of this gene implicated in fibrosarcoma. Orthologous to human CDC42 (cell division cycle 42).

GO:

id name namespace
GO:0030225 macrophage differentiation biological_process

KEGG:

id description
K04393 CDC42; cell division control protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04465168_04466295.mRNA False 958 mRNA 0.39 5 4464812 4466295
TU17363 True 3662 lncRNA 0.35 1 4463257 4466918

Neighbor

gene id symbol gene type direction distance location
CI01000001_04402985_04419845 NA coding downstream 44935 4402780 ~ 4419877 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A coding downstream 65008 4392314 ~ 4399804 (-)
CI01000001_04378975_04384527 SDCBP2, SDCB1, SDCBP coding downstream 80226 4378885 ~ 4384586 (-)
CI01000001_04343042_04345953 NA coding downstream 118228 4342041 ~ 4346641 (-)
CI01000001_04334653_04338081 NA coding downstream 126043 4334163 ~ 4338769 (-)
CI01000001_04468566_04523431 DNMT3BB.1 coding upstream 1914 4468209 ~ 4523431 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF coding upstream 260109 4725927 ~ 4728210 (-)
CI01000001_04732844_04744038 NA coding upstream 266549 4732844 ~ 4744038 (-)
CI01000001_04746153_04754209 NA coding upstream 279838 4746133 ~ 4754209 (-)
CI01000001_04757377_04759421 DNAJC5, DNAJC5.L, DNAJC5AB, DNAJC5AA coding upstream 290124 4756419 ~ 4759507 (-)
G15537 NA non-coding downstream 2900 4461657 ~ 4461912 (-)
G15544 NA non-coding downstream 3379 4460975 ~ 4461433 (-)
G15546 NA non-coding downstream 6054 4456197 ~ 4458758 (-)
G15539 NA non-coding downstream 14351 4450209 ~ 4450461 (-)
G15625 NA non-coding downstream 15393 4448865 ~ 4449419 (-)
G15638 NA non-coding upstream 101449 4567744 ~ 4568009 (-)
G15703 NA non-coding upstream 164471 4630766 ~ 4631671 (-)
G15704 NA non-coding upstream 166074 4632369 ~ 4633693 (-)
G15646 NA non-coding upstream 235261 4701556 ~ 4703945 (-)
G15729 NA non-coding upstream 326180 4792475 ~ 4794669 (-)
CI01000001_02258523_02262621 NA other downstream 2167600 2258442 ~ 2263103 (-)
G14228 NA other downstream 2408334 2055974 ~ 2056478 (-)
G14219 NA other downstream 2469914 1994210 ~ 1994898 (-)
G14104 NA other downstream 2697354 1763669 ~ 1771468 (-)
G15736 NA other upstream 334606 4800901 ~ 4801395 (-)
G16332 NA other upstream 484394 4950689 ~ 4957842 (-)
G16462 NA other upstream 756482 5222777 ~ 5229585 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) LOC122328447 LOC107603155,LOC107707751,LOC107672009 misc NC_056721.1 CM032090.1 10514979 ~ 10518751 (+)