CI01000001_04468566_04523431 (DNMT3BB.1)


Basic Information

Item Value
gene id CI01000001_04468566_04523431
gene name DNMT3BB.1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4468209 ~ 4523431 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_04468566_04523431.mRNA
GCTGCAGTGAATGGTGACACGTCTGTGGGAGAGGGATTGTCAGAGAACGACAGCGGTCTGGAGATGACCAATGAGAACAGCCCGCTGACTGCGGCAGAGCCACCTTCACCTTTCTGCCCCAAACAGAACGGAGGCGCAGCCTCACCCACAGATGAGAGTGTGAACAGCATCAGAAGAAAGAGATCACGTAAGCGCTCCGACACAGAGGAAGACAGTGCCTGGGATTCCTCCTACAGTGAGGAAAAGGCTGACATTGGGTCTGGTTGTGAGACGGGTCTGCGGCAAAGGCCTCGTCCCAGGACTATTTTCCAGGCAGGACTGACAGCTCACAGTAAACCCCGCAACAGAGAGAGGGGACATAGTAAACAGGATCACAGCAACCTGGTTTCTAGTGTTCCTGAGGGTCCCGTACTGGAGCTCATGGAACAGGACTCTAAAGACTCTGCACAGAGCAGCGCCACATCCACCTCGACTACTGACACAGTCAGCCAACCCGAGTACAAGGATAATAAAGGTTTTGGTATTGGAGAGTTAGTCTGGGGCAAGATAAAGGGCTTTTCTTGGTGGCCCGGGATGGTGGTGACCTGGAGAGCAACAGGGAAGAGGCAGGCGTCCCATGGCATGCGCTGGCTGCAGTGGTTTGGAGATGGAAAATTCTCCGAGGTGTCTGCTGACAAACTCGATTCCATCACAGCCTTCCCAAAGTTTTTCAACCAGTCATCCTACACCAAATTGGCTTCCTATCGTAGAGCGATCTTCCAGGCCCTGGAGGTGGCTAGTATACGGGCAGAGAAGACTTTTCCTCCGTGTGAGTCAGACAGTCTTGAAGAACAGGTAAAGCCCATGCTTGACTGGGCTCATGGTGGCTTTATGCCCAAAGGTCAGGAGGGCCTGAAACCCAGAGAGAACGCAGCTGAGTATTGTGTTTTTCCCATGGCCTCAGAGAGCTCAGCACTGCTGGACTCCAGCCCTCCAGAGTTCCCCCCCTCTGCTAAGAGAGCTCGACTCAGCCTCTGTAAGGCCAAAACTGGCACTGAGGACGTCTACAGCAGAGAACAAATGGTCAATGAAGTTTTGAAGAATCACAGAAGTATAGAAGAGTTTTGCCTCTCTTGTGGAAAGACGAGAGTGGCGACCTTCCACCCGCTGTTTGAAGGAGGCCTTTGCCTAACATGCAAGGATGTTTATTTAGAGATCTCCTACATGTACGATGACGATGGCTACCAGTCGTACTGCACCGTGTGCTGTGGCGGCAGAGAGGTGCTGCTCTGTGGAAACGCCAACTGCTGCAGGTGTTTCTGTGTGGACTGTCTGGATATATTAGTGGGAGCAGGAGCGGCCAACAGCGCCCGTGATCTGGACCCATGGCGCTGCTACATGTGTCAACCGCTGCAGCAGTACGGCGTGTTAAAGAAACGCCACGACTGGAGCCTGAAACTACAAGAGTTCTTCGTCAATGACAATGGACAGGAGTTTGAAAGTCCAAAAATTTACCCTGCAGTCCCAGCAGAGCAGAGACGTCCAATCAGAGTCCTTTCACTGTTTGATGGCATTGCGACAGGTTATCTGGTGCTTCGGGACTTGGGCTTCAAGGTTGATGTGTACATTGCATCAGAAGTATGTGAGGACTCGATTTCAGTGGGAGTTGTCCGGCATGAAGGAAAAATCCAGTATGTGCATGATGTTCGCAACATCACCAGAAAAAATATTGCTGAATGGGGGCCCTTTGACTTGGTGATTGGTGGAAGTCCCTGTAATGACCTTTCAATTGTCAACCCTGCCAGGAAAGGCCTGTACGAGGGGACTGGACGGCTGTTTTTTGAGTTTTACCGCCTTTTGAGTGAAGCAAAACCAAAGGAAGGGGAAGACCGGCCTTTCTTCTGGATGTTTGAGAACGTGGTCGCCATGAGCGTCAACGATAAGAGAGACATCTCACGATTCCTGGAGTGTAATCCAGTGATGATTGACGCTATCGAGTTTGGTAAGGTGCGTACCATCACGACACGGTCCAACTCCATCAAACAGGGCAAAGACCAACACTTCCCTGTCATGATGAACGGCAAAGAGGACATCCTGTGGTGCACAGAGCTCGAGAGCCTGTGTCCCACCGTGCAGTGTGGAGGAATGGCTGCTGCTGCTGGGACTGGGAGGCCGCTCGCGTTTCATTGGCCCCAGCAGTTCTTCTTTCCTCCCTTTAAGTTTTCGCGGTATGGAAAAATGGTGGTGAATGTAAAGACTGGAGATGAGAAACACAACCTCAGTCAGCTGTTGGACTGGCTCAATGACACACTGCAAGCCACTTTCAGTCAAGTGGAGCACACCTGCTCAGGTGCTGCTTTTTGTCAGTTGATGGACATCATTCATCCTGGATCTATCGACATAAATAAAGTGAAGTTCACAGCAAAAGAGAACACGGACATCTTGAATAATTTCAATCTGCTACAGGAAGCTTTCAACAAAGCACAAATCAAGAAAGAACTAGAACTGAAATTGTTGGTGAATGGAGACACACTAAAAACATTAGATTTGCTTACATGGTTCAAAAATATGTATGATCTCAATTTTGCAAAGCAGAAGTATAGCCCTCAGGAGGTTTTTGTTGAGGAGGAAGAGGTGTCATTGGAATCAAGCAGAGAGTTTGGAATGTATGAGTTTTTGGAGTACCAGTTCATTGATGAGGGTGACGCACATCCAGCTGACCAGTCAGTGGAGCAGTACTGGAAGACCGAGCTGAGGATTATGGGAAGGACATCTAGTTTTGGGAAATTAATCGTTAGCTTGTTGGCCCTGCCCAAAACATTGAAAAAAAAGATCATTTTTGAACAGATGATTCAACAAGCTGACAGTTTCACGGAGTGGAAAATGAAGGACTGTGAGGAGAAGGACGTGGCTGAGGACGATGTCACAGACAGCAGCTCATATAAAAGCGCTCCATCACATCTCAGCCCAGAGACTCAAGGGAGCATCACATCTGATATCATTGACTTAACGGAAATGGACGACATTGCGCCAATGGAAGTGGAGGACATTTCGCCTCTGGAAAAAAGAAGAGAAAATACATCTTCAACACAAAATGATGAGAAAACAGACAGTTCATACCAGGATGGTTACACAGTTGGCGAGATGGTTTGGGGGCCAATTGAGGGCTTTGGTCTTTGGCCTGGACTAGTTCAGAGCTGGGATAGCAAGAGGCCTTGTGGCTCCATGCGTAAAGTGATTTTCTTTGGGAACAGAGTACTATCAGAGATCCAAGCTGATGATCTCCTGCCCTTCTTTTCATTTGCGAAGTGCTTCTGTTCTAATTCCTTCGCTACGGTAAAGGCGTATAAAGATGCAATCTTCAGTTCTCTGCAGGTGGCATCCAGACGCAGTAGAATGTTTTTTTCTCCTGAGACGGACTCTACAGATGAGCTGCTTAGAGTTATGTTGGATTGGGCCTTTGGAGGCTTTGAACCATCGGGTCCAGATGGACTTCAACCTCAACCTCAATCAGAATACAGTGACAAGATTTATATGCCTCAATCAGTGAATGGGGACATGGGAAACCACAAAGACCATACAGGAAAGTTATTTCAATTAACTGTGTCTTTAAATAAACTCCCTGAATCTCTGGACCTGCATGATGGCTCAATAGACCTTGGGACAACAGATGCTTACAGAAAACGCATGTATCCAAAATGGAATCAGAGATCCTTGCAGACCGTGAAGACCCGTAGAAAACAAAAACATGCACACCAGAATAAGCAACAAAATACTAAACCAGTCATACAGATCGAGTCCAGACAGAACAGCCAAAAAAGACATCAAATGGTGCATGAATTTCTGAAAAACAAACGAAACATTGAAGAGTTCTGCTTATCATGTGGGAGTATGCCTGTTGAAATCATCCACCCACTCTTCGAAGGAAGGCTGTGTGCGAACTGCAAGTATAATTTCACGGAGACGCTTTACCGTTATGATGAAGATGGCTATCAGTCGTACTGCACCGTGTGCTGTTCAGGCATGGAGGTCATTTTGTGCGGCCACGAAAGCTGTTGTCGCTCCTATTGTGTGGACTGTCTGGATATCCTAGTGGGTGAGGGGACATTCGACCAGCTGAAAAATGTGGACCCGTGGACTTGTTACCTGTGTGCACCTGAGAGCAGCTCTGGAGCCTTGAAGCCCAGGCATGACTGGAGCATCCGTGTGCAGGAATTCTTTGCCAACAACAGTGCCATGGAGTTTGAGCCCCATCGTGTTTACCCATCAATCCCCGCTAACCTGCGACGTCCAATCAGAGTCCTTTCCTTATTTGATGGTATAGCCACAGGATACCTCGTTCTGAGGGATCTTGGCTTCAAAGTGGAAAAATATGTGGCCTCAGAAATAGATGAAGAATCAGTTACCATCTCTATGGTCAACCATGATGGAAAAATCACTCATGTGGATGATGTTAAGAACATTACAAAAGAGCATATTAAGAAATGGGGCCCGTTTGATCTTCTCATCGGTGGAAGTCCGTGTAATGACTTGTCCATAGTCAACCCTGCCCGTAAAGGCTTGTTTGAGGGCACTGGGCGGCTCTTTTTCGAATATTATCGGCTGCTGAATGTTATGAAGCCGAAGGAGGACGACCCACGACCGTTCTTCTGGCTGTTTGAGAACGTGGTGTTCATGCAAACCAGAGTTAAAGCTGACATTTGCCGCTTTCTGGAATGTAACCCTGTGCTTGTTGATGCTGTGAAAGTGAGTCCAGCTCACAGAGCAAGATACTTCTGGGGGAACATACCTGGGATGAACAGACCAATCATAGCATCTCCGAATGATAAACTCCGTCTTCAGGATTGTCTGGAGGCCGGTCGCACTGCAAAGTATGAAAAAGTTCGCACTATCACTACACGGCCAAACTCACTGAAGCAGGGCACCAATGATGCGCATTTCCCCATCACCATGAATGGAAAAGATGACAATATATGGGTCACAGAAATGGAGAAATTATGGAAAAATGCTGATGAATCTACAGATTGGAGAAACACAATATCAGTGAGCTGTTGGACTGACTCAATGACATACTCCAAGACACTTTCAGTCAAGTGCAGCACACCTGCTCAGTCAAAGTGTCCAAACCAGAGCAAGAAGAATGCTAAAAAGAGATCAGATGAATCTTTTTCCTGCACCCCAGCCACAATTTGTTTCATCAGAAAGTATTGCCCATCTACCTCAACTGATGCTGGATCAAACTGTACCAATAGCAAGGACAGTCTAGTATTAGGCAAGAAATACTGGGAAGATATTACAGCCTCCTGCAATGAGTTTTTGGAGTACCAGTTCATTGATGAGGGTGACGCACATCCAGCTGACCATTCAGTGGAGCAGTACTGGAAGGCAGAGCTGAGGATTATGGGAAGGACATCTAGTTTTGGAAAAATTATCATTAGCTTATTGGCCCTGCCCAAAACATTGAAAAAAGAGATCATTTTTGAACAGATTTTTAATCAAAATGACAATCTCAATGAGAGTAAAATGAAGGACTGTGAGAAAAAGGACATGTCTGAGGACGATATCACAGACAGCAGCTCATATAAAAGCGCTCCATCACATCTCAGCCCAGAGACTCAAGATGTTATTGACTTAAGGGAAGTGGAAGACATTGTGGCAATGGAGAAAAGAAAAGAAAGCATCTTGCGTAACAATGAGAAAACAAACAGTCCATACCAGGGCAATTACACAGTCGGTGAGATGGTTTGGGGGCCGATTGAGGGCTTTGGTCTTTGGCCTGGACTAGTTCAGAGCTGGGACAGGAAGAGGCCTTGTGGCTCCATACGTAAAGTGATTTTCTTTGGAAACAGGATGCTGACAGAGATCCAAGTTGACGATCTCCTGCCCTTCTTTTCATTTGCTAAGTGCTTCTGCTCCAATTCCTTTGCTACAGTAGCGACATATAAAGATGCTATCTTCAATTCTCTGCAGATGGACTCAACGGATGAGCTGCTTAGAGTTATGCTGGACTGGGCCTTTGGTGGCTTTAAACCAACAGGCCCGGATGGACTTCGACCTCAATCAGAATACAGTGAAGAGGATTTTATGCCACGATCTGTGAATGGGAATGTTGGATCCTCTCCGAACTACAAAGACCATAGAGAAAAATTATTTAAATTAACTGTATCTCTGAATAAACTCCCTGAATCTCTGGACCTGCACAAAGATCAAATGGTGCATGAATTCCTGGAAAACAAGAGAAACATTGATGAGTTCTGCTTATCATGTGGGAGTACATTCGTCGAAATCATCCACCCACTCTTCCAAGGCAGCCTGTGCATGAAATGCAAGTATAATTTCACGGAGACGCTGTACCGTTATGATGAAGATGGCTATCAGTCGTACTGCACCGTGTGCTGTTCTGGCATGGAGGTCATTCTGTGCGGTCATGAAAGCTGTTGTCGCTGCTATTGTGTGGACTGTCTGGATATCCTAGTGGGTGAGGGGACATTCAACCGGCTGAAAAATGTGGACCCGTGGACTTGTTACCTGTGTGCACCTGAGAGCAGCTCTGGAGCCTTGAAGCCCAGGCATGACTGGAGCATCCGTGTGCAGGAATTCTTTGCCAACAACAGTGCCATGGAGTTTGAGCCCCATCGTGTTTACCCATCAATCCCCGCTAACCTGCGACGTCCAATCAGAGTCCTTTCCTTATTTGATGGTATAGCCACAGGATACCTCGTTCTGAGGGATCTTGGCTTCAAAGTGGAAAAATATGTGGCCTCAGAAGTTGATGAAGAATCAGTTACCATCTCTATGGTCAACCATGATGGAAAAATCTCTCATGTGGCTGATGTTAAGAACATTACTAAAAAACACATTGAGAAATGGGGCCCGTTTGATCTTCTCATCGGTGGAAGTCCGTGTAATGACTTGTGCACAGCCAATCCTAGCCGAAAGGGCTTGTTTGAGGGCACTGGGCGGCTCTTTTTCGAATATTATCGGCTGCTGAATGTTTTGAAGCCGAAGGAGGATGACCCACGACCGTTCTTCTGGCTGTTTGAGAACGTGGTGTCAATGGAAACCAGAGTTAAAGCTGACATTTCCCGCTTTCTGGAATGTAACCCTGTGCTTGTTGATGCTGTGAAAGTGAGTCCAGCTTACAGAGCGAGATTCTTCTGGGGGAACATACCTGGGATGAACAGACCAATCATAGCATCTCAGAAAGATAAACTCAGTCTTCAGGATTGTCTGGAGGCCGGTCGCACTGCAAAGTATGAAAAAGTTCGCACTATCACCACACGACCAAACATACAGAAACCAGGCGTTGATGACAGGCATTACCCCATCATCATGAACGGAAAAGATGACAGTCTGTGGATCACTGAATTGGAGAAGTAACTTTTACTTATTCTATCCTTTCAGTTTTACATTCTTTCCAAATTCAGTCACAAATATGTATTTTGTTTATACTCACTCTTACACTTGCACTTTGACAGAATATTTGGATTTCCGAAGCATTACACAGACGTGAAAAATCTGGGTCGTATGCAGAGGCAGAGAGTGCTGGGGAAGTCCTGGAGTGTCCCTGTCATAAGGCATCTTTTTGCACCACTAAAGGATTACTTTGCTTGTGACTAAGTTCTCTTAAAATGAACAGAAGTTTATGGTGCACTTTTCACCTTTCAGAGTAAAAAGACTCAGGGAAACAACAGTTTGTTACTTTTTATTGTTTTTTTGTCGTTTAAAATGAATAAA

Function

symbol description
dnmt3bb.1 Predicted to enable DNA (cytosine-5-)-methyltransferase activity; DNA binding activity; and metal ion binding activity. Acts upstream of or within several processes, including DNA methylation on cytosine within a CG sequence; hematopoietic stem cell homeostasis; and regulation of hematopoietic stem cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; hematopoietic system; immature eye; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including acute myeloid leukemia; autoimmune disease (multiple); carcinoma (multiple); immunodeficiency-centromeric instability-facial anomalies syndrome 1; and thymoma. Orthologous to human DNMT3B (DNA methyltransferase 3 beta).

NR:

description
de novo DNA methyltransferase 3, partial

GO:

id name namespace
GO:0006306 DNA methylation biological_process

KEGG:

id description
K17399 DNMT3B; DNA (cytosine-5)-methyltransferase 3B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_04468566_04523431.mRNA False 7716 mRNA 0.46 62 4468209 4523431

Neighbor

gene id symbol gene type direction distance location
CI01000001_04465168_04466295 CDC42.L, CDC42L2, CDC42P6, CDC42 coding downstream 1914 4463257 ~ 4466918 (-)
CI01000001_04402985_04419845 NA coding downstream 48332 4402780 ~ 4419877 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A coding downstream 68405 4392314 ~ 4399804 (-)
CI01000001_04378975_04384527 SDCBP2, SDCB1, SDCBP coding downstream 83623 4378885 ~ 4384586 (-)
CI01000001_04343042_04345953 NA coding downstream 121625 4342041 ~ 4346641 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF coding upstream 202973 4725927 ~ 4728210 (-)
CI01000001_04732844_04744038 NA coding upstream 209413 4732844 ~ 4744038 (-)
CI01000001_04746153_04754209 NA coding upstream 222702 4746133 ~ 4754209 (-)
CI01000001_04757377_04759421 DNAJC5, DNAJC5.L, DNAJC5AB, DNAJC5AA coding upstream 232988 4756419 ~ 4759507 (-)
CI01000001_04846242_04846925 BHLHE23 coding upstream 322376 4845807 ~ 4847700 (-)
G15537 NA non-coding downstream 6297 4461657 ~ 4461912 (-)
G15544 NA non-coding downstream 6776 4460975 ~ 4461433 (-)
G15546 NA non-coding downstream 9451 4456197 ~ 4458758 (-)
G15539 NA non-coding downstream 17748 4450209 ~ 4450461 (-)
G15638 NA non-coding upstream 44313 4567744 ~ 4568009 (-)
G15703 NA non-coding upstream 107335 4630766 ~ 4631671 (-)
G15704 NA non-coding upstream 108938 4632369 ~ 4633693 (-)
G15646 NA non-coding upstream 178125 4701556 ~ 4703945 (-)
G15729 NA non-coding upstream 269044 4792475 ~ 4794669 (-)
CI01000001_02258523_02262621 NA other downstream 2170997 2258442 ~ 2263103 (-)
G14228 NA other downstream 2411731 2055974 ~ 2056478 (-)
G14219 NA other downstream 2473311 1994210 ~ 1994898 (-)
G14104 NA other downstream 2700751 1763669 ~ 1771468 (-)
G15736 NA other upstream 277470 4800901 ~ 4801395 (-)
G16332 NA other upstream 427258 4950689 ~ 4957842 (-)
G16462 NA other upstream 699346 5222777 ~ 5229585 (-)
G16664 NA other upstream 1820673 6344104 ~ 6347955 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022238 dnmt3bb.1 coding NC_007134.7 CM002907.2 17011454 ~ 17101360 (-)