CI01000001_05581818_05584137


Basic Information

Item Value
gene id CI01000001_05581818_05584137
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5581818 ~ 5584621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_05581818_05584137.mRNA
TATTGTTCATATCGTGGAAGATAACAAGATCACTGATGGCGTCAAAATCTAGGGTCTCCATTCTGGATTACTTCAATATCGTCTGTGAGGGAGAAAATGGCAAAATTGAATCAAACTGCAAAGCTTGTGGCACAAGGATTCAGGCTAAACGGACAGTTACTTCTAACTTTGTTACACATTTAAAGCGCAAACATCAGGCCATGTATGATGAGTTTGTGAGGAAGAAAGATGTGAAAAGGGAGGCAATGCAGAATTGTACTGGCCCACCAAGTGGTCGAGTGATCTCTCAAAGCAGTCCTGGGATGAACAAGTTTGACTACAGTGACCCTCGCCAATCCCTCATCTCAGAAGCCATCGCCAAGATGATCATCCGAGACCTGCAGCCGACACAGATAGTTGAATATGAGGGCTTCCGTGAGCTTCTTCAGCTCCTGGAGCCCCGTTACATACCGGTACCATGCCATTACATACAACAGCAGCTCCTTCCAGCCTATGTCTCCCAAGTTCAACTAGCTGCCAAACAGGCTCTAAAAGGAGCAGAGTCCTGTAGTGTGACCCTTGACCTGTGGAAAAGTAGCTCTGTGGGTAACAGCTGTGGTGCTGGGTATCTTGGAGTGACTTGCCACTTCATAAACGCAGACTGGCACATTAGATCTGCTCTTTTGGCATGCTTACCCCTTACAGACCACAGCAACACTCAGCAAATGCTCAGCGAGTTTGATGAGATCTCTGAATCCCATGGCGTGTCTGGAAAAGTGTTCAGAGTCGTCGCTGACCTGTCGCCTTGTGAAAACAGATCTCCTTTTCGTCTTCCTGGGTTCAGTCTCTTTGGAAATGATGAAGAAGATGAGGAAGGGGAGGAAGATTGTAGCGACGAAGAGCCTGGAGCAGGAGAAGCCAAAGAAGCAATTAGTAGCAATGAGAACCGCAAGTCTTTAGATCAGTGTCTTGGTCGAAGTAGGATAGACTGTTTTGCTCGATTACTAGCTCATTGTGTTAAGGAAGGAGTTTGCGCTTCCCCTCAGATATCACTTCCTCTAAACAAAGCAGCCCACCTCTATAACTACGTAATTGCCACAGTGGCTCCTGAAAAACTTGTCCAAGTATTTGGCTCCAATACCTCATCAACAAATTGGCAAAGACCCTCTTCCATGGATAAGTGGAACGCTCAGTTAAAGATATTGCGCCAAATGGTGGAGTCGATGGATTTTCTTGAAGACATTGTAGATAGAAACGACCTAGTTCTCGGTAACTTAGAAAAAGCGGTGCTGCGGGAGCTAGTTGAAGTGTTGGAGCCTTTCGAAGAGGCCTCAGACATGGTACAAGGAGACAAGCACGTGTCCATCAGCCTAGCCCTGCCCTGTGTGTTGGGTCTACGCAAGCACCTGGCTGAGGTCGTAACTCACCAGTGCTCTGGGATCGTGATGGGATTGTCTCAAGCTCTGGACCGCAGACTGGCAGGCATTCTTGAGGACCCTCTTTACGTAACAGCCACCACCCTGGACCCGCAGTTCAAGTTGTCCTGGAGCAGTGACAGCGACTGGCACAAACAGGTGCTGCTGGAAGAGGTTGGAAAGCATACTCGGCCTTTGAGTCCACTAGAACATCATTCAGAGGCCCAGCCGTCACCGTCCAAACGCTGCAAGCTGTTTTCTTTCATTAAGCAGCGGCCGACCGCCCAGGCCAAGACAGTGGAGCAGGAGCTGTCCACATATCTCCACGAAGAACCCACCGATGAGGATCCACTACAATACTGGAAACGCAAGTCCATCGATTTCCCATTGCTTTCACAAGTAGCCAAGAAAGTTTTTACCGTGCCAGCAACAACCACATCAGTGGACCAGATATTTAACCTGGTTAGCAAGACTCTCAGGCCAGAACAATGCCGATTTCTGCCAAAAAACTTGGACACTCTAATTTACTTGAAGGCTAACTATAGGATACTTTGGTCCTAACTACAAAGAGAGCTTTACAGAATTTTCTTTCTGTACTGATATCAAACCAAACACCTCAAATGCAAAATGGGGATTGTGCCTGATATGTATCTCTCGATAAATACTGTAGAATTACCCCAAAGCAAACAAAATACTTTTGTCAGCAAATATTTCCCTTTTTTTAAATAATGTACAAAAGGCTAGACTTAAATGATATAAAATTAACTATTATATAGTGTTAACCTATTATGACGTTACTCATTATCAGATGCTGGTTGCCTTTTTTGCAGACTTTTATAAAATATTATGTTCTGTGTACTCTCACTCCCCAAAAATGCAACAGGATTAGATAAGAACAGTGCACACTTGATTAATTGTTAAATATTTCCATAATTCTCCTTCCATCAGCATGTTATACCCCAGAACCACAGAAAAGCTATTCTTGCAGCCAAATGCTTTCTCAGAACACATGTAAGAAAAATATTTAATTTCCAGCAAAACATTA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_05581818_05584137.mRNA True 2439 mRNA 0.45 2 5581818 5584621

Neighbor

gene id symbol gene type direction distance location
CI01000001_05579315_05580553 CCDC115 coding upstream 1115 5579315 ~ 5580703 (+)
CI01000001_05565644_05568075 NA coding upstream 13330 5565644 ~ 5568488 (+)
CI01000001_05498507_05500723 NA coding upstream 80702 5498210 ~ 5501377 (+)
CI01000001_05487409_05494726 NA coding upstream 86482 5487302 ~ 5495336 (+)
CI01000001_05478200_05480124 NA coding upstream 101314 5478200 ~ 5480504 (+)
CI01000001_05587090_05591952 APOBEC2B, APOBEC2 coding downstream 2469 5587090 ~ 5592138 (+)
CI01000001_05689002_05702184 NA coding downstream 104034 5688655 ~ 5702684 (+)
CI01000001_05734513_05735964 NA coding downstream 148500 5733121 ~ 5736013 (+)
CI01000001_05795264_05798555 ATP6AP1LB coding downstream 210643 5795264 ~ 5799834 (+)
CI01000001_05803416_05809184 SLMAPB coding downstream 218795 5803416 ~ 5809306 (+)
G15978 NA non-coding upstream 3786 5577410 ~ 5578032 (+)
G15980 NA non-coding upstream 9606 5571923 ~ 5572212 (+)
G15966 NA non-coding upstream 109441 5472040 ~ 5472377 (+)
G15964 NA non-coding upstream 111569 5470040 ~ 5470249 (+)
G15983 NA non-coding downstream 14217 5598838 ~ 5599260 (+)
G15984 NA non-coding downstream 15602 5600223 ~ 5600503 (+)
G15985 NA non-coding downstream 16535 5601156 ~ 5601440 (+)
G15989 NA non-coding downstream 21898 5606519 ~ 5612278 (+)
G15987 NA non-coding downstream 27713 5612334 ~ 5613782 (+)
CI01000001_05279884_05287123 NA other upstream 291862 5279837 ~ 5287698 (+)
G15794 NA other upstream 517114 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 1960367 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3910814 1667762 ~ 1671167 (+)
G13051 NA other upstream 4536666 1043713 ~ 1045152 (+)
G15995 NA other downstream 127264 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 1947951 7531541 ~ 7540586 (+)
G17234 NA other downstream 2447503 8032124 ~ 8032483 (+)
G17353 NA other downstream 3631401 9216022 ~ 9228859 (+)
G17354 NA other downstream 3649842 9234463 ~ 9240677 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021611 si:dkey-109j17.5 coding NC_007134.7 CM002907.2 19202636 ~ 19206419 (+)
mexican tetra (Astyanax mexicanus) G134516 LOC103033727,LOC108436326,LOC108276432 non-coding NC_035911.1 CM008314.1 24817171 ~ 24820589 (-)