CI01000001_05587090_05591952 (APOBEC2B, APOBEC2)


Basic Information

Item Value
gene id CI01000001_05587090_05591952
gene name APOBEC2B, APOBEC2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5587090 ~ 5592138 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_05587090_05591952.mRNA
AGTGGTATCAACGGTACAATTCAGACACCTGTTTGAGAAGCAGCAGTTCACCGTGAGTTCAGGGGAGAGTGGGGACATCAGCACTCTGTACAGGAATCTAACCTTAAAATACACCGTATTTCACATCTGCGATGGTTATCTTCTAGAAAGTGACTCAGTTCCTCCAACACAACTCAAGTATCTCAAGACGCAGTTTGCTAATGGGTCAGAACACATTCAGGCTGTCATCTCTCTTACTCACACACTCCCATCTAGCAGACTCATTTCATCGCACAGCAAAGTCATGGCAGACAAAAAGGACAGCAAGACTCCCAAAAATGAGCAAAAAACTGAGGAGATGCCACAGGGAAATGGGGAGATAGCAGAAGGAGCCAAAGGCCCTGTCAAAGATGAGGAGTTTGAGCTGGAGCCCATGGAGCTGCCTCCATTTGAGATCATTGTAGGAGACAGAATGAACCCCACCTTCTTTAAGTTCCAGTTTAAAAATGTGGAATATTCTTCCGGGCGCAATAAGACCTTCCTGTGCTACCAGGTAGACATTCAAGGGGGCGCTGCAGAGACAGACGGCCTTCGTGGTTACCTGGAGGATGAGCATATGGGTTCACACGCTGAAGAGGCCTTCTTCCAACTGGTGCTGGCCTATTACGACAAGTCACTCAACTACACAGTGACCTGGTACACGTCCTCGAGCCCTTGCGCAGCCTGCGCCGCTAAGCTTGTTGAGATCTTGCGAGCACGCAAGACACTGCGCCTTAATATCCACTGCTCCCGTCTTTTCCAGTGGGAGGAACCAGAGATACAGGCCGGACTTCAGGCACTAGCTGGGGCGGGATGTAAACTACGCATGATGAGGCCTTTGGACTTTGCGTATGTTTGGTCTACTTTCGTTGAGAACGAGGAAGATAACTTTACACCCTGGGAAGACTGTCAAGATAACTATGATTATTACGACGAGAAGTTGTGTGATATTTTAAAGTAGGATAAGTAGCCGCTTCTGGCCTATGATTAAGATCGTTTAATACAGCCTATGAACTGCCTTTAAGGAAATTGGTACTTCAAAGCCAATTATTACAATCACCCTGTCATTTTAGCAGCTTTGTTTCCTCTGTCAGCACTGCTTCTCTTGTAACATCACATGGCTGACTTTACATAAGTTTATAATCCA

Function

symbol description
apobec2b Predicted to enable RNA binding activity and cytidine deaminase activity. Acts upstream of or within several processes, including cell dedifferentiation; sensory epithelium regeneration; and skeletal muscle organ development. Predicted to be active in cytoplasm and nucleus. Is expressed in retina. Orthologous to human APOBEC2 (apolipoprotein B mRNA editing enzyme catalytic subunit 2).
apobec2 Enables cytidine deaminase activity and identical protein binding activity. Involved in DNA demethylation. Acts upstream of or within cytidine to uridine editing. Predicted to be active in cytoplasm and nucleus.

NR:

description
C->U-editing enzyme APOBEC-2-like, partial

GO:

id name namespace
GO:0043697 cell dedifferentiation biological_process

KEGG:

id description
K18772 APOBEC2; C->U-editing enzyme APOBEC2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_05587090_05591952.mRNA True 1165 mRNA 0.47 5 5587090 5592138

Neighbor

gene id symbol gene type direction distance location
CI01000001_05581818_05584137 NA coding upstream 2469 5581818 ~ 5584621 (+)
CI01000001_05579315_05580553 CCDC115 coding upstream 6387 5579315 ~ 5580703 (+)
CI01000001_05565644_05568075 NA coding upstream 18602 5565644 ~ 5568488 (+)
CI01000001_05498507_05500723 NA coding upstream 85974 5498210 ~ 5501377 (+)
CI01000001_05487409_05494726 NA coding upstream 91754 5487302 ~ 5495336 (+)
CI01000001_05689002_05702184 NA coding downstream 96517 5688655 ~ 5702684 (+)
CI01000001_05734513_05735964 NA coding downstream 140983 5733121 ~ 5736013 (+)
CI01000001_05795264_05798555 ATP6AP1LB coding downstream 203126 5795264 ~ 5799834 (+)
CI01000001_05803416_05809184 SLMAPB coding downstream 211278 5803416 ~ 5809306 (+)
CI01000001_05814686_05836203 NA coding downstream 222508 5814646 ~ 5837238 (+)
G15978 NA non-coding upstream 9058 5577410 ~ 5578032 (+)
G15980 NA non-coding upstream 14878 5571923 ~ 5572212 (+)
G15966 NA non-coding upstream 114713 5472040 ~ 5472377 (+)
G15964 NA non-coding upstream 116841 5470040 ~ 5470249 (+)
G15983 NA non-coding downstream 6700 5598838 ~ 5599260 (+)
G15984 NA non-coding downstream 8085 5600223 ~ 5600503 (+)
G15985 NA non-coding downstream 9018 5601156 ~ 5601440 (+)
G15989 NA non-coding downstream 14381 5606519 ~ 5612278 (+)
G15987 NA non-coding downstream 20196 5612334 ~ 5613782 (+)
CI01000001_05279884_05287123 NA other upstream 297134 5279837 ~ 5287698 (+)
G15794 NA other upstream 522386 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 1965639 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3916086 1667762 ~ 1671167 (+)
G13051 NA other upstream 4541938 1043713 ~ 1045152 (+)
G15995 NA other downstream 119747 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 1940434 7531541 ~ 7540586 (+)
G17234 NA other downstream 2439986 8032124 ~ 8032483 (+)
G17353 NA other downstream 3623884 9216022 ~ 9228859 (+)
G17354 NA other downstream 3642325 9234463 ~ 9240677 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021612 apobec2b coding NC_007134.7 CM002907.2 19213472 ~ 19221027 (+)