CI01000001_05795264_05798555 (ATP6AP1LB)


Basic Information

Item Value
gene id CI01000001_05795264_05798555
gene name ATP6AP1LB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5795264 ~ 5799834 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_05795264_05798555.mRNA
AACTCACCATGCCATTTCCCCAATTGTCCTATTTCAACATTTTATGATGCAGATGGAGAACATGTTGAGAGTCCAAGTGCCTCACACGAGGAGAGTTATTCGCCTGCAGCTGAAAATCCACTCAGAAGAATACTGCAGCCTTACGGGTGGCATCTGCATGCCCAGCCCAGAACCAAACGGAAGTTGCTTCAGTCTACCAGCTCGGGACCTTACTCCCCACTGACTGTAGCTTACAATGGCAAGATCTGCATCCTCTTCAAAGCTAAAAGACTGGCTATTCGATACAGGAACAACACTTTCCTGGACCTCACAGAGAGGGTGTTTGGACCCAATGCACAAGTAGACACCAAAGGCTCTCTTTGTACAAAGGAGAAGGCCACGCTATCTTTGCATTTGGGCGATGTGGAAGACATCAGAGGACTTGTCATCAGGCTTCAGATGTCCAACACATTCTACGAATCAGTAAGCCAGAACTGGTTCACTCTGGACAGTGTTCACATCCACTACAACTGGACTCACGAGGCCACGTTCAATGCCACGGAGGTCTATGCCCCCGCCACCTATTCTTACCACTGCCAGCATGTCAGCAGCTTACAGAAATATGACACCCTACTGGTGCCCAGCTCCCACACTGACAGCTCGGCAAACTGGCACATCACTTTCACAGATTTTCAGATCCAGGCCTTTAATGTCCAGTCCAACAAGTTTGCTTCAGCAAGTGACTGTGCAACTTTCTTCACTCCAGCCATCTTGATGGGCCTGATCACCTCTTTGATTCTACTACTGGTGTTGGCTTACGCCCTGCACATGGTCGTCCACCTCAAGCACATTGATCGTTACGAAGAGCACAAGACCACCGTCTACTTCCCCCGCACCCCCGAGGCCGAGCTCCCAGACAAGAACAGCGTGTGAGGAGCGACGGCGGTGCTGTAAAACCAGCAAAAGACCAGCGTGAAAAGGATTGCTAGTTCTGATTCTGGATGGCTGCGTTGTCCTCTTGGTCTTCCTCCTGCCTGGCACTAATTCCTCCCCTTATCACTGTCTTAACCTTACTTCTTACAACCAGAGGATGAGATTACCTGATGCATCAGGTGTTAAAACCCAGGCTGGAGCCAAAACCTGGACATCTCACGGCTTTCCAGCACCAGCACTGGGAAGCCTATGAAACGAGGACAAAAAAAAAAAAAAAAAAAAGTGAGATTGCCTTTTAATAGATCACCATTCTGGTGGACTTTTCAAAGCACTTCACTGACTGGATACAAGTTCAGTGGTTAGAAATATACTAATTGACAAGGCAGAGATGGCAGAAGAGAAAAGACTGTGAAACAGAAATGACTGTGGTTTGATATGGAAGTCGTCTTCTTTTTTTTTTTTTCTTTTTTTTTAACAGTACTTCATAAATCACCATCTCATTCATCTGTAATGGAGTCCGCAGACTGATCTGCCAATTACAAGAACTGTTATATGACTGCCAAAGTGGTGCAAAATTGTTTGTCAACCTTGATGGGTAACTGACAGTAATAATGTGAATACGAAACATACAAAACAAACCATAAATGTACAGTGCTTAATACTATTTATGTATTCCAGGACTATACAATATAGATTCAGGAACTTCATAAATATACTCATTGGCTTTAAATGATCAGCTAGATATTCATATAGATCTAGATTCAACTGCTGTTTTAGTAATTAACAAACTTCCAGTATTAAGCACCTTCAAATCTATAAATATCAAGTGCGTAAAATGTATAGCAAGAAAAAGACCTTTTTTAAGCTTCGGAAACTGATGTATTGCACAGAACATTTTTATATGATCTCATAATTGCTAGATCTATATGCTGTCCCTTTTCAGGTGGAATATATTAGGACTAATAGACGAATTTAGCACCCCTTAAGAATTTATAGTACAGACAGTATAACTATAGTGAGGTAATGCTGAAAGAATGCTGTACAATTATTCATCTAAGTGTTTAATACCCTCAGTATCATAATCAGTATACCTCTATATCTACAATTATAACATCAGTAACTCATTATCACAATAACCTGCAGCATGACAATGACTAGAGATAAACCTCTACCATGGCACGTCTGATTCTGGAGGTAACAATGTGTTCATTTGAATGATGGTCATACACACTGAAGTGCACAAGAAGTTTTCTGAACATCAGTCAATTCAGTCTGAACA

Function

symbol description
atp6ap1lb Predicted to be involved in regulation of cellular pH. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)).

GO:      GO:0015991, GO:0016021, GO:0016020, GO:0033180, GO:0046933, GO:0046961

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_05795264_05798555.mRNA True 2191 mRNA 0.42 5 5795264 5799834

Neighbor

gene id symbol gene type direction distance location
CI01000001_05734513_05735964 NA coding upstream 59251 5733121 ~ 5736013 (+)
CI01000001_05689002_05702184 NA coding upstream 92580 5688655 ~ 5702684 (+)
CI01000001_05587090_05591952 APOBEC2B, APOBEC2 coding upstream 203126 5587090 ~ 5592138 (+)
CI01000001_05581818_05584137 NA coding upstream 210643 5581818 ~ 5584621 (+)
CI01000001_05579315_05580553 CCDC115 coding upstream 214561 5579315 ~ 5580703 (+)
CI01000001_05803416_05809184 SLMAPB coding downstream 3582 5803416 ~ 5809306 (+)
CI01000001_05814686_05836203 NA coding downstream 14812 5814646 ~ 5837238 (+)
CI01000001_05838017_05841551 ABHD6B coding downstream 38183 5838017 ~ 5841683 (+)
CI01000001_05842665_05846705 KCTD6B, KCTD6, KCTD6A coding downstream 42831 5842665 ~ 5846924 (+)
CI01000001_05861486_05864311 NA coding downstream 61611 5861445 ~ 5864604 (+)
G16071 NA non-coding upstream 9570 5785342 ~ 5785694 (+)
G16060 NA non-coding upstream 36858 5756362 ~ 5758406 (+)
G16027 NA non-coding upstream 85881 5709181 ~ 5709383 (+)
G16026 NA non-coding upstream 87799 5707255 ~ 5707465 (+)
G16025 NA non-coding upstream 88160 5706778 ~ 5707104 (+)
G16080 NA non-coding downstream 71772 5871606 ~ 5871892 (+)
G16084 NA non-coding downstream 77199 5877033 ~ 5877272 (+)
G16090 NA non-coding downstream 85956 5885790 ~ 5886041 (+)
G16112 NA non-coding downstream 208405 6008239 ~ 6009382 (+)
G15995 NA other upstream 80313 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 505308 5279837 ~ 5287698 (+)
G15794 NA other upstream 730560 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2173813 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4124260 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1732738 7531541 ~ 7540586 (+)
G17234 NA other downstream 2232290 8032124 ~ 8032483 (+)
G17353 NA other downstream 3416188 9216022 ~ 9228859 (+)
G17354 NA other downstream 3434629 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 3618494 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017011 NA coding CM030122.1 CM030122.1 41943549 ~ 41952515 (+)