CI01000001_05803416_05809184 (SLMAPB)


Basic Information

Item Value
gene id CI01000001_05803416_05809184
gene name SLMAPB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5803416 ~ 5809306 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_05803416_05809184.mRNA
ATGGAGGAGCAGAATCTGAAAGATCCTATTAATAAAGTGTCTCTGATCAAAGATGAGCTGAGCAGGAGCACTGTGGAGGCCAGTGAGTCTGAGAAGGTCATCCAGCGACTGAACCAGGAACTGCAGGAGGCCAATGAACAGGCCAACTCGGGCAAACACAAATGTGTCGAACTCCAAGGTCTATTGGAGGAGGAGAAAAGAGCCAATAAGCAGCAGGCAGAGGAGTCAGCAAAACAGATAAAGGTCTTGCAGACTCAGCTCCAGAAGCTGCAGGATGACATGGAGAATCTCAGGGATCAGAAGGACAGCGCGGTCTTCAGCATGCGACAGGAAGCGCACGCGGCTCAGGAGGAAGTGCAGGTGTTGCGCCGCACTATGGAGAAAACGGCAGCCGAGCGAGAGCATGAGGTCAGCGCGCTGAAAGGGAACCTAGCAACGTTAACTTCTGAGCTGGAGAAATGGCAGTTGGCTGCAAACAAATACGAGCGTGAGCTTGACAGTGTGCAGGCCAGTCACCAACAGCAGAACCAGCAGAGAGACAGAGCTGCCAAACAGCAAGCGAGCGAGCTGGAGCGGCTGCAGAAGGACTGTGAGAGCCTGAGGAGGGAGTGTGCGTCTCTGAGGTCAGAGAGAGAGCAGCTGGCTGATAAACAGCAGAAAGAGAAGATCAGCCTGCAGAGTGAGAGCAGCACCCTGCGCTCAGAGAAAGAACAGCTACTGAAGAAACAACAGCAGCTGGAGAAAGAGCTGGACAGCTCCAAGAAACAGACCACAAGTCTGAGCAACACAGTCAAGACCCTGGAGAAGACGCAGGTGGACCTGGAGAAACGGCTGAGCGTCCTGCAGGAGGAACACCAGAGAGACACTAGCCAGCTGGAGCAAAGCAATAGCAGGATCAAAGAACTGCAGAAAGAGTATGAGGAGATCCAGGCAGAGCTGTCGGGCCTCAGGGAGAAGTATGAGAATGTAGAGGAGGAGAAAAGCTCCATCAGTCTGGAGCTGCAGCAGAGCCAAGAGCGCCTGAGGCTTCTGCAGGACAAAGACAACCATGTGAGTTTTCAATCCATGTAACGCTGATGTTCAACAACAGGGGCACTGACAATAGGGACAGTTCAAGAGGAAAGAGCGCATATTTTGTGGCGTTGTTTGCCCTTGAAATCTGAGATGAAAAACATAGCATTGTTTGTTTGACA

Function

symbol description
slmapb Predicted to be involved in protein localization to plasma membrane; regulation of membrane depolarization during cardiac muscle cell action potential; and regulation of voltage-gated sodium channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; median fin fold; nervous system; neural crest; and pharyngeal arch 3-7 skeleton. Orthologous to human SLMAP (sarcolemma associated protein).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_05803416_05809184.mRNA True 1193 mRNA 0.52 7 5803416 5809306

Neighbor

gene id symbol gene type direction distance location
CI01000001_05795264_05798555 ATP6AP1LB coding upstream 3582 5795264 ~ 5799834 (+)
CI01000001_05734513_05735964 NA coding upstream 67403 5733121 ~ 5736013 (+)
CI01000001_05689002_05702184 NA coding upstream 100732 5688655 ~ 5702684 (+)
CI01000001_05587090_05591952 APOBEC2B, APOBEC2 coding upstream 211278 5587090 ~ 5592138 (+)
CI01000001_05581818_05584137 NA coding upstream 218795 5581818 ~ 5584621 (+)
CI01000001_05814686_05836203 NA coding downstream 5340 5814646 ~ 5837238 (+)
CI01000001_05838017_05841551 ABHD6B coding downstream 28711 5838017 ~ 5841683 (+)
CI01000001_05842665_05846705 KCTD6B, KCTD6, KCTD6A coding downstream 33359 5842665 ~ 5846924 (+)
CI01000001_05861486_05864311 NA coding downstream 52139 5861445 ~ 5864604 (+)
CI01000001_05883364_05897204 NA coding downstream 70269 5879575 ~ 5897214 (+)
G16071 NA non-coding upstream 17722 5785342 ~ 5785694 (+)
G16060 NA non-coding upstream 45010 5756362 ~ 5758406 (+)
G16027 NA non-coding upstream 94033 5709181 ~ 5709383 (+)
G16026 NA non-coding upstream 95951 5707255 ~ 5707465 (+)
G16025 NA non-coding upstream 96312 5706778 ~ 5707104 (+)
G16080 NA non-coding downstream 62300 5871606 ~ 5871892 (+)
G16084 NA non-coding downstream 67727 5877033 ~ 5877272 (+)
G16090 NA non-coding downstream 76484 5885790 ~ 5886041 (+)
G16112 NA non-coding downstream 198933 6008239 ~ 6009382 (+)
G15995 NA other upstream 88465 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 513460 5279837 ~ 5287698 (+)
G15794 NA other upstream 738712 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2181965 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4132412 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1723266 7531541 ~ 7540586 (+)
G17234 NA other downstream 2222818 8032124 ~ 8032483 (+)
G17353 NA other downstream 3406716 9216022 ~ 9228859 (+)
G17354 NA other downstream 3425157 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 3609022 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location