rfx6 (rfx6,LOC107678847,LOC107697139,LOC107743320)


Basic Information

Item Value
gene id rfx6
gene name rfx6,LOC107678847,LOC107697139,LOC107743320
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23109345 ~ 23119136 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218619.1
AACCTAATATTCTTTTATTGTCcagtatttgtgtttatttgccTATTTTCACAATTCCCGCCTTATTTGACATGGATTTAGCATCTACTCCTCAGCATCACAGATGAAACCAGTAATAACAAAATGTTCTGAATATagcgtgtgtatgtatgtatatgaaaGGCAAAGCAGCAATGAGGAGGCTGACTGGCTCTGATTGGGTTTGTAGTCAAGCTGCACAACCAGATTTCAAGGAGATGATATTCCTCTTGGTTAATCATTAAATCCCAGAATCCATTGCCAGTCTTCTGTAAATAAGATAAATGGCCTTAAGGCACTCACCTCTGTGACGCACCATTTCAGAGAGAGCAGAGCTTTAATTAAGACTGGAAGGTGTTATCTCGCCCATTGTCGGATTAATGAACTTCTCCAGgattaatgttatatttgaaCGTTTTTTATTAGAGTTCCCATCATGCTACAGGTTTATTTTGTGAGCATTTGTTTCTGAGAAACGAGGAAAAGCAACACACATAGTTGAaaaattgttcaaatgttttttggaGATTCACTGGGACGCTTCGGAGATGCGTATCATTTCAGGAATGGATATATGCATCACGTTGGCCAACGTTAGAATGGGCTGTTGattttggaatatttaaaaaatttagatttttgacgggcacttttttgtattatttgactTGGtggttttaattttgcattccagtttttctttttaatttctcCTTGAACATGCCAATGAAAAGAAATATAGGGAGTCCATTGAAGAATGACACGTTTCATCAGCTACAAGTGTCGCAGACAAAGAGAGCTTGCAAAAACGCAGATGACCTCCACGCTACAATTCTTGTTGACCAAGACAATTTCgggaaaaacatgtttttcaaagCCAGGCTTGATGAGGAGGAGGATTCTGGCATTAAATCAGAAGCTGATGAAAGTAATGGAAGCATTTCCTCTGAAGAGGACCTGGGCCATCTGGATTATTCTAAGACGTTCTCTGTAAAGCAAACTTTGCCAAAGAAAAGCATCAGTCAGATCATCAAGGACAAGAAGAAACAGACTCAGCTTACTTTGCAATGgCTTGAGGAAAATTACATTGTTTGCGAAGGTGTTTGCCTGCCACGGTGCATCCTCTACGCTCATTATCTAGACTTTTGTCGGAAGGAGAAATTAGATCCTGCTTGTGCTGCCACTTTTGGGAAGACTATAAGGCAGAAATTTCCTCTGCTTACAACACGAAGGCTTGGAACCAGAGGCCATTCGAAGTATCATTATTATGGTATTGGAATCAAGGAGAGCAGTGCGTATTATCACTCTGTGTACTCTGGAAAAGGTTTGACGCGATTCTCTGGAAGCAAGCTAAAAAATGAGGGAGGATTCACCAGAAAATACTCTCTTAGTTCTAAAACAGGAACTCTTTTACCTGAATTTCCGAGTGCACAGCATTTAGTGCTTCAGGAGTCTATTTCGAAAGATAAGGTTGACACATTGATTATGATGTACAAGACCCACTGTCAGTGCATTCTGGACAATGCCATAAATGTCAACTTCGAGGAGATCCAGAACTTTCTGCTTCACTTCTGGCAAGGAATGCCTGAGCATCTCCTGCCTCTGCTAGAGAACCCGGTTATCGTGGACATCTTCTGCGTGTGTGACTCTATACTCTACAAAGTTTTGACTGATGTTCTCATCCCTGCTACTATGCAGGACATGCCAGAGAGTCTTTTGGCAGATATTCGTAATTTTGCCAAGCACTGGGAACACTGGATGGTATCTTCCTTAGAGAATCTTCCGGAAATCCTCTCAGAAAAGAAGCTGCCGACAGCGCGTCGATTTGTGTCCTCCTTAAAGAGACAGACCTCCTTTTTACATCTAGCACAGATCGCAAGACCTGCGCTTTTCGACCAGAACGTAGTGAATTCTATGGTGAATGATATTGATAAGGTGGATCTGAACAGTATCGGTTCTCAAGCACTCCTTTCAGTTACAAACGACCAAGATTCAGACTTCTACTCTGAATATGACTCAATTTCAGTGTTTCAAGAGCTGAAAGACCTCCTGAGGAAAAACGCCACAGTGGAGTCTTTCATTGAGTGGCTGGACTCGGTGGTTGAGCAGAAAGTTATTAAGCCCAGCAAACAAAATGGTCGGTCGGTGAAGAAGAGAGCTCAAGATTTCCTTCTGAAGTGGAGTTTTTTTGGAGCACGAGTGATGCACAATCTCACCCTAAACAACGCTACCAGCTTTGgcTCGTTCCACCTCATTCGGATGCTTTTGGATGAATACATTCTGCTAGCCATTGAAACACAATTCAATAATGACAAAGAGCAAGACCTTCAGAATCTACTGGAGAAATACATGAGGAGTGCAGaTGCAAGTAAGGCTACTTTTACCGCCTCTCCGAGTTCCTGTTTTTTGGCTAATCGGATTAAATCCGGCGTGGCGTCCAGTGATTCGACTGTGAAGGACGAGAACCAAGCAGAACACGATTTCTTGTCCCTTACAGCCGCACAGCAGGGGCTCGGGACCGGTGTTGTGTACCATAGTGCTGATCAGGACAACTTTACTATACATGGTCAAATGGATTACTTGCAGAACAGTGCCCCCCTGATGACGCCTCCGATCTCTCCTGCCATGATCAACCGCAGCAGCGTGATCAACCAGGGCCCGATGGCTGTGAGGCCCCAGAGCAGCTGCCCCATCCAGCCCCAGGTCTCCTGCCAGACCTTCTCCGACAGCATGTATCAGAGTCTGCACAATGCCGCCTCCGGCTCCTATCCCAGCTCGTCTTACTACCAGCCTGTGTTCAGAGCTCAGACTCACACTCCAGCATCAGCCTATCAGGCCCGCGCTGAGAGCGGCCGCTTCGCACCCTTCTCTGGACACCAGCTGCCCAAAGACTGCTTCGGCAGCAGCTGCCCTGTGTCCCCGTACAGCTCGAGGGTAGCAGGGGCCGGATACGTAGCCTCGGGTGACCCCGCGATGGATACCGAGGGCGTACAGCTGCTGGACAGCGCAGCGTATAGCTTTGGAGGAAGCGCTGCCGGCGGAGATGCGTGTTCAGGGCCCGTTTGCAGCTCTGGGCACAATGGATATTACGGCAGCAGCGGGTATGTGGACGCTCAGAGGATGGGCACGTTTATCGATCAGCATGTGTCTGTTATCAGCAGCGTGAGCAGCATTCGCTCCGTTTCGGCCTACGCTGAAGTACACGACCCTCTCAACATCCTGGACGACACGAGCAGAAAGACAAGACCCTACTACACTGACCTGTCCTCAATGGGCACACACGCAACGGGATCCAGCATCGCTCATTCCTGCTCCGTCTCGACGCCCTGCATGTACGGGACTCCCGCTCCTTATcactcccagaatgcactgctgCCTCTCCAGGGGTCCACAGAGATCAGAGAAATGGTGTCGTCTCTGCCCCCCATTAACACCGTGTTCATGGGGTCAACCGGAGGGCCGTCCTGACCGAAACCTTATCAGTAATTCAACATCCCTGCTGTACTAACAGAAGGTGAGACGGTTTTAGCTCATCTGTGTATCGCTCAGTGCGTTTTTCTTTGCCAGTTGCATTGCGGAAAGACTAACCGATTTACTGAATTGTCGTTTCTTTGTGCTAACAGTTAGGATTATGACAGGTAATGGCccagttatatattttttcgcTATCTCTATCGTTTTGTAGTATATAAGACACTTTCGTTGCTGTTCTTGA
>XM_043218620.1
GCGCATCACGTTTTCCGGAGATCGCGCGGCTTTGACACGTGCTGTAAAACGCCGCGTTTGCGGGCCAATAAGAAATCTTCTGCATGTATTTGATAACAAATCAAATGGACCGAGGCTAGTTGTCGTCACACAGAAATATAGGGAGTCCATTGAAGAATGACACGTTTCATCAGCTACAAGTGTCGCAGACAAAGAGAGCTTGCAAAAACGCAGATGACCTCCACGCTACAATTCTTGTTGACCAAGACAATTTCgggaaaaacatgtttttcaaagCCAGGCTTGATGAGGAGGAGGATTCTGGCATTAAATCAGAAGCTGATGAAAGTAATGGAAGCATTTCCTCTGAAGAGGACCTGGGCCATCTGGATTATTCTAAGACGTTCTCTGTAAAGCAAACTTTGCCAAAGAAAAGCATCAGTCAGATCATCAAGGACAAGAAGAAACAGACTCAGCTTACTTTGCAATGgCTTGAGGAAAATTACATTGTTTGCGAAGGTGTTTGCCTGCCACGGTGCATCCTCTACGCTCATTATCTAGACTTTTGTCGGAAGGAGAAATTAGATCCTGCTTGTGCTGCCACTTTTGGGAAGACTATAAGGCAGAAATTTCCTCTGCTTACAACACGAAGGCTTGGAACCAGAGGCCATTCGAAGTATCATTATTATGGTATTGGAATCAAGGAGAGCAGTGCGTATTATCACTCTGTGTACTCTGGAAAAGGTTTGACGCGATTCTCTGGAAGCAAGCTAAAAAATGAGGGAGGATTCACCAGAAAATACTCTCTTAGTTCTAAAACAGGAACTCTTTTACCTGAATTTCCGAGTGCACAGCATTTAGTGCTTCAGGAGTCTATTTCGAAAGATAAGGTTGACACATTGATTATGATGTACAAGACCCACTGTCAGTGCATTCTGGACAATGCCATAAATGTCAACTTCGAGGAGATCCAGAACTTTCTGCTTCACTTCTGGCAAGGAATGCCTGAGCATCTCCTGCCTCTGCTAGAGAACCCGGTTATCGTGGACATCTTCTGCGTGTGTGACTCTATACTCTACAAAGTTTTGACTGATGTTCTCATCCCTGCTACTATGCAGGACATGCCAGAGAGTCTTTTGGCAGATATTCGTAATTTTGCCAAGCACTGGGAACACTGGATGGTATCTTCCTTAGAGAATCTTCCGGAAATCCTCTCAGAAAAGAAGCTGCCGACAGCGCGTCGATTTGTGTCCTCCTTAAAGAGACAGACCTCCTTTTTACATCTAGCACAGATCGCAAGACCTGCGCTTTTCGACCAGAACGTAGTGAATTCTATGGTGAATGATATTGATAAGGTGGATCTGAACAGTATCGGTTCTCAAGCACTCCTTTCAGTTACAAACGACCAAGATTCAGACTTCTACTCTGAATATGACTCAATTTCAGTGTTTCAAGAGCTGAAAGACCTCCTGAGGAAAAACGCCACAGTGGAGTCTTTCATTGAGTGGCTGGACTCGGTGGTTGAGCAGAAAGTTATTAAGCCCAGCAAACAAAATGGTCGGTCGGTGAAGAAGAGAGCTCAAGATTTCCTTCTGAAGTGGAGTTTTTTTGGAGCACGAGTGATGCACAATCTCACCCTAAACAACGCTACCAGCTTTGgcTCGTTCCACCTCATTCGGATGCTTTTGGATGAATACATTCTGCTAGCCATTGAAACACAATTCAATAATGACAAAGAGCAAGACCTTCAGAATCTACTGGAGAAATACATGAGGAGTGCAGaTGCAAGTAAGGCTACTTTTACCGCCTCTCCGAGTTCCTGTTTTTTGGCTAATCGGATTAAATCCGGCGTGGCGTCCAGTGATTCGACTGTGAAGGACGAGAACCAAGCAGAACACGATTTCTTGTCCCTTACAGCCGCACAGCAGGGGCTCGGGACCGGTGTTGTGTACCATAGTGCTGATCAGGACAACTTTACTATACATGGTCAAATGGATTACTTGCAGAACAGTGCCCCCCTGATGACGCCTCCGATCTCTCCTGCCATGATCAACCGCAGCAGCGTGATCAACCAGGGCCCGATGGCTGTGAGGCCCCAGAGCAGCTGCCCCATCCAGCCCCAGGTCTCCTGCCAGACCTTCTCCGACAGCATGTATCAGAGTCTGCACAATGCCGCCTCCGGCTCCTATCCCAGCTCGTCTTACTACCAGCCTGTGTTCAGAGCTCAGACTCACACTCCAGCATCAGCCTATCAGGCCCGCGCTGAGAGCGGCCGCTTCGCACCCTTCTCTGGACACCAGCTGCCCAAAGACTGCTTCGGCAGCAGCTGCCCTGTGTCCCCGTACAGCTCGAGGGTAGCAGGGGCCGGATACGTAGCCTCGGGTGACCCCGCGATGGATACCGAGGGCGTACAGCTGCTGGACAGCGCAGCGTATAGCTTTGGAGGAAGCGCTGCCGGCGGAGATGCGTGTTCAGGGCCCGTTTGCAGCTCTGGGCACAATGGATATTACGGCAGCAGCGGGTATGTGGACGCTCAGAGGATGGGCACGTTTATCGATCAGCATGTGTCTGTTATCAGCAGCGTGAGCAGCATTCGCTCCGTTTCGGCCTACGCTGAAGTACACGACCCTCTCAACATCCTGGACGACACGAGCAGAAAGACAAGACCCTACTACACTGACCTGTCCTCAATGGGCACACACGCAACGGGATCCAGCATCGCTCATTCCTGCTCCGTCTCGACGCCCTGCATGTACGGGACTCCCGCTCCTTATcactcccagaatgcactgctgCCTCTCCAGGGGTCCACAGAGATCAGAGAAATGGTGTCGTCTCTGCCCCCCATTAACACCGTGTTCATGGGGTCAACCGGAGGGCCGTCCTGACCGAAACCTTATCAGTAATTCAACATCCCTGCTGTACTAACAGAAGGTGAGACGGTTTTAGCTCATCTGTGTATCGCTCAGTGCGTTTTTCTTTGCCAGTTGCATTGCGGAAAGACTAACCGATTTACTGAATTGTCGTTTCTTTGTGCTAACAGTTAGGATTATGACAGGTAATGGCccagttatatattttttcgcTATCTCTATCGTTTTGTAGTATATAAGACACTTTCGTTGCTGTTCTTGA

Function

symbol description
rfx6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within endocrine pancreas development. Predicted to be located in nucleus. Is expressed in intestine; pancreas; pancreas primordium; and pancreatic bud. Orthologous to human RFX6 (regulatory factor X6).

NR:

description
LOW QUALITY PROTEIN: DNA-binding protein RFX6-like

GO: NA

KEGG:

id description
K19521 RFX6; regulatory factor X 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218619.1 True 3733 mRNA 0.46 19 23109966 23119136
XM_043218620.1 False 3114 mRNA 0.48 20 23109345 23119136

Neighbor

gene id symbol gene type direction distance location
trnal-cag_35 NA coding upstream 9057 23100206 ~ 23100288 (+)
plg plg,LOC107678850,LOC107727632,LOC107697138,LOC107743301 coding upstream 47069 23055116 ~ 23062276 (+)
gpr31 gpr31,LOC107549704,LOC107743300,LOC107697152,LOC107678862 coding upstream 56291 23050263 ~ 23053054 (+)
ttll2 LOC107678816,LOC107727576,LOC107743327,LOC107697071,LOC107549674,LOC107603067 coding upstream 66966 23039822 ~ 23042379 (+)
unc93a unc93a,LOC107678861,LOC107743326,LOC107697148 coding upstream 71305 23033699 ~ 23038040 (+)
vgll2a vgll2a,LOC107603082,LOC107678825,LOC107727586,LOC107549690,LOC107697153,LOC107743328 coding downstream 23771 23142907 ~ 23146976 (+)
dcbld1 LOC107678855,LOC107743303,LOC107697143 coding downstream 45309 23164445 ~ 23192385 (+)
LOC122324745 LOC107549679,LOC107678820,LOC107697069 coding downstream 91654 23210790 ~ 23214047 (+)
nus1 nus1,LOC107678856,LOC107697154,LOC107549681,LOC107736830 coding downstream 95940 23215076 ~ 23222915 (+)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107678858,LOC107727669 coding downstream 113248 23232384 ~ 23311466 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding upstream 35680 23066587 ~ 23073665 (+)
G141121 NA non-coding upstream 186217 22920693 ~ 22923128 (+)
G141091 NA non-coding upstream 551843 22557229 ~ 22557502 (+)
G141084 NA non-coding upstream 566813 22542136 ~ 22542532 (+)
G141081 NA non-coding upstream 568018 22541118 ~ 22541327 (+)
LOC122324747 NA non-coding downstream 75485 23194621 ~ 23206082 (+)
G141207 NA non-coding downstream 211055 23330191 ~ 23332366 (+)
G141216 NA non-coding downstream 269356 23388492 ~ 23408824 (+)
G141403 NA non-coding downstream 451959 23571095 ~ 23571454 (+)
G141436 NA non-coding downstream 651959 23771095 ~ 23771426 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 249018 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 355184 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 591662 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 632571 22471761 ~ 22476774 (+)
G140785 NA other upstream 1264644 21844146 ~ 21844701 (+)
pln NA other downstream 224579 23343715 ~ 23351655 (+)
G141475 NA other downstream 953735 24072871 ~ 24074423 (+)
G141524 NA other downstream 1321107 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 1337854 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 1849744 24968880 ~ 24994837 (+)

Expression


Co-expression Network