LOC122324587 (LOC107737325,LOC107555768,LOC107556167)


Basic Information

Item Value
gene id LOC122324587
gene name LOC107737325,LOC107555768,LOC107556167
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14418442 ~ 14439790 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219120.1
ACACATCAGACTTGACATTTTGTGCCGCTGCTCATATTTGTTTCTTccttaaatgtaatatttaacgCTACAATAGGGCATCTTTGTTcgaatactgaaaaaaaaagagattaagaaaagattaagaaattaagaaagAGACGGAAAAGCAGCCTCACATATCTTAGAAAAACATCACACTTTGTCCTTTCAGCTCAAGGCAGACTGGAAGAGAGAGGAAGggattttttagttttaaggaGGAGTAGGCAGAACAGCGGGGTGGAAGCAAACAGAACAAGGGGAAGAGAGTTTGAAAAAGACAGTgggaggtaaaaaaaaaaaagaaaaaagactgaGCTTAAAAAACGGTCTTTTGGTGGTTGCTTATGAACAGATAGTACCTTAAGTCATGTCGGCTGCGTGTGTGTTTCTGGTGATGTCTGGAGGGCAGACCAGCGGAGAGGCTGCTGGTGCCAGGCAGCGACGCAGGACCTGCTCGAACCCGGAGAGAGAAGATCTGGAGGGACTTTCTTTAGCACCCGCTGCCCACAAACTCTCGCCCATGTACCCTAAGGAAGAGCACAGCGCAGGAGGGATCAGTTCCTCTGTCAACTATCTTGATGGAGCCTATGAGTTCCCGAACTCCACACAGACCTACGGCACCTCGTCCCCCACCGAGCCTGCCTCGGTCGGATTCTACCCGGCTCCCCCGGACCCCCACACGGCCCCTGCTGAAGAACATCTGCAGACCTTAGACACCAGATCCGGCAGCCCTCTTATGTTCGCACCCTCCAGCCCTCAGTTGTCTCCGTACTTGAGCCATCATGGGGGACACCACTCGACCCACCAGGTGTCCTACTATCTGGACACCCCTTCTAGCACTGTCTACAGgtcgAGTGTGGTGTGCTCTCAGCAGACAGGTATTGGTTTGTGTGAGGAGCTGTGCAGCCCCACTGACAGACAGGAGCTGTACCCCGGATCAAGAGCCGCAGGAGGGTTCGATTCAGAGAAGGAGATGCGCTTCTGTGCGGTGTGCAGTGACTATGCGTCTGGCTATCACTATGGAGTCTGGTCCTGTGAGGGATGCAAAGCTTTCTTCAAGAGAAGCATTCAAGGTCACAATGATTATGTTTGTCCAGCAACCAACCAGTGCACTATTGACAGAAACCGCAGGAAGAGCTGCCAAGCATGCAGACTACGCAAGTGTTATGAAGTAGGCATGATGAAAGGagGTATTCGTAAGGACCGCGGAGGCCGCGCTATCAGGTgtgagaggaggaggagcgcTAATGAAGACCGTGTCAAGAGCTACAGTGAGCAGTCGAGCCGCACCGGCCGGAAAACGGCTCCTCCGCAGGACAGGAGGAAGAAGAGCGGCGGCGGTGGGGTCAGCGCTTCATGCATGCCTCCTGACCAGGTGCTGATGCTGCTTCTGGGGGCAGAGCCGCCGGCCGTCTGCTCGCGGCAGAAACACAGCCGCCCGTACACCGAGATCACCATGATGTCCCTGCTCACAAACATGGCTGACAAAGAGCTCGTTCACATGATCGCCTGGGCTAAGAAAGTACCAGGTTTCCAGGATCTCTCTCTGCACGATCAGGTTCAGCTGTTGGAAAGctcttggctggaggtgttgatGATCGGCCTCATATGGAGGTCTATTCATTCGCCTGGAAAACTCATCTTTGCTCAGGATCTCATCCTCGATAGGAGTGAAGGAGAATGTGTCGAGGGGATGGCTGAGATTTTTGACATGCTCTTGGCGACTGTGGCACGCTTCCGTAGCCTCAACCTCAAGCTGGAGGAATTTGTTTGCCTCAAAGCCATCATACTTCTCAATTCTGGTGCATTTTCATTCTGCTCCAGTCCAGTGGAGCCCTTGATGGACAGCTTCATGGTACAGTGCATGCTGGACAACATCACTGATGCCCTCATTTACTGCATTGGTAAATCAGGTGCTTCTCTGCAGCTCCAGTCCCGCCGTCAGGCCCAGCTTCTGCTGCTGCtctcacacatcagacacatgAGCAACAAAGGAATGGAGCACTTATACCGCATGAAATGTAAGAATCGAGTCCCGCTGTATGACCTTTTGTTGGAGATGCTAGACGCCCAGCGGTTCCATTCTTCAGGAAAGGTGCAGAGACCGTGGCCACAGAGTGAGAAAGACCCCCCTTCTACACCAACAACCAGCAACAGCAGCCCCTCCAGAGGTCCTGGAGCCGTGCTGCCCAACACTGCCTGTCACGAGCAGAGTCCAGACCCCTGAGCTGTGTATTAACCAACAACTGAAGAATGTGAAGACTGTGAAGCAGTCAGTGCTGTCTAATAGTCTCTCCTTGTGCCTTATCAAAGTCCACTTTAGATTCTGAAAACCAACCCATTAAAACGTAAAAACGTATCTTTAGAAATGGAAAAGTTAGGTCTTCAAATAAGAACAAGGCTCCCAAACATTATACATCTGTGTTCACGTGATTCATTAgcttaaaaagacattttgaaaaagtgtCATACTTTGGGGAAAAAAGGGCTCTTAGGCCTTTTCGGCAGACTGAGAGACAGATTTATGTAGAAGCTGCtaattcttttcttctttttaaatagcCAACGGAGTGACAGGTTTCACATCATAAACTTATAtgaagggttactccaccccaaaattagcattttgtcattaatcacttacccaaacccataaaagctttgttcgtcttcggaacacaattgaGGATATTTTGGAAGACACTGTCAAAAcgtgtctttcatactttttctgGACCTTTTTTTATCCTAAAAAAGGATTTTTATcctaaatatcttaaattgtgttctaagatgaacaaagcttttacaagtttggaatggcatgggggtaagtgattaatcactacatttttattttggggtggagtaaccctttaagataaacaaacaaaaaaataaagtaaaaaaaaaaaagcaggtggCTCGTGAACTATATCATGAACTAGCATTTCTCCATGTACACGGTTTATCAAGCactattactgtattaaaatcaGACGAGGTTAGAATCAATATTCCACTGAAGAACCCAAGAACTTTATATCTCTGCATCCGTGTTACACATTTTTgatgttactgttattatttgcattatggCAATAATAGTTATGTATAATTACAAGCAGCGCTTAATATAAAGGATCTGAATTGAAACTGAAAACAAGAGTAAAGTTACTCTTggaaaaacaagacaattaaaaaaattatgtgataTATTTTCACAATCAGAGATATGTTTATCAATAAAAGTCACTGCTccctttttaatgttaaatataagtaattttAACTCAAATTGAAGGGAACAGAGCAGCAGTTAGTGGTGACATTAGTGCCATATTTTGTGCTTATTGGTTGGTtaaattaacagaaatgttACATCATATTTTTGCTGTGCTGTAATTGGTTGGCCATGTCAATTGACACGTAAATGCTGATTTCTATAAGCATTGTGAAGACTTGAAATGAATAACAGCCTATAATCACTGGTCTGGTATTCAATACAGGAAGTGACACTGACTGCCTTACTGCCCATACCCAAACGTGTCATATTTTCCCTCAAATCTGTGAATGTGTCAACATTTAGCAGCTATTATATTTGATACTTGAGTTTTATCATCTGTacagtatgttttcattttgaaggaactaaatgtgaaaatgttaattttacttaattataAAGGACAgagttaaaaaaactaaatcactttaaaatgaaacttttaaCTAAACAATGGGAAGATTagaagaatttatatatatatattaaatgaaaagatgtgtctttattGTCAGCATTAGCAAactgtacatacataaataGGCATAGACATTGTAATTATAATgggtttttttcctccacaCTGTCATTGTcataacacacaaaataaagatacagtaagtatataacagtaataaaaagcACACGTCTCTCATA

Function

NR:

description
PREDICTED: estrogen receptor isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0032355 response to estradiol biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG:

id description
K08550 ESR1, NR3A1; estrogen receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219120.1 True 3970 mRNA 0.44 9 14418442 14439790

Neighbor

gene id symbol gene type direction distance location
LOC122324437 LOC103911517 coding downstream 212836 14201457 ~ 14205606 (-)
serpina10a serpina10a,LOC107659188,LOC107711658,LOC107569891,LOC107721331,LOC107665369,LOC107602246 coding downstream 225305 14188793 ~ 14193137 (-)
asb2a.2 asb2a.2,LOC107659190,LOC107721380,LOC107583801,LOC107602948,LOC107711632,LOC107665367 coding downstream 249843 14163287 ~ 14168599 (-)
asb2a.1 LOC107721379,LOC107659189,LOC107583790,LOC107711656,LOC107602264 coding downstream 256880 14153743 ~ 14161562 (-)
btbd7 btbd7,LOC107659192,LOC107721332,LOC107583814,LOC107711654,LOC107602295,LOC107665372 coding downstream 311677 14062042 ~ 14106765 (-)
zbtb25 zbtb25,LOC107711665,LOC107602170,LOC107668255,LOC107721290,LOC107659158 coding upstream 88733 14528523 ~ 14532800 (-)
zgc:153157 inafm2,LOC107659157,LOC107721328,LOC107562690,LOC106952300,LOC108165849 coding upstream 106881 14546671 ~ 14549563 (-)
syndig1l syndig1l,LOC107659181,LOC107602907,LOC107562693,LOC107668242,LOC107711667 coding upstream 139657 14579447 ~ 14603338 (-)
ino80 LOC107562697,LOC107721325,LOC107659179,LOC107668207 coding upstream 303165 14742955 ~ 14777822 (-)
vps18 vps18,LOC107659178,LOC107562698,LOC107739368,LOC107602125,LOC107668247 coding upstream 338886 14778676 ~ 14784182 (-)
G138463 NA non-coding downstream 235282 14182209 ~ 14183160 (-)
G138415 LOC107659195,LOC107583832,LOC107659196 non-coding downstream 384986 14031165 ~ 14033456 (-)
G138405 NA non-coding downstream 427026 13982174 ~ 13991416 (-)
G138401 LOC107721343,LOC107721342,LOC107583935,LOC107721341,LOC107659208 non-coding downstream 464555 13948128 ~ 13953887 (-)
G138407 NA non-coding downstream 472705 13945260 ~ 13945737 (-)
G138562 NA non-coding upstream 84942 14524732 ~ 14525023 (-)
G138579 NA non-coding upstream 138911 14578701 ~ 14578901 (-)
G138627 NA non-coding upstream 353705 14793495 ~ 14793709 (-)
LOC122324712 NA non-coding upstream 399267 14839057 ~ 14843736 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding upstream 883782 15323572 ~ 15324280 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 219914 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 650618 13763335 ~ 13767824 (-)
G138285 LOC107555741,LOC107659217,LOC107665323 other downstream 726435 13664506 ~ 13692007 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other downstream 869851 13547276 ~ 13548591 (-)
cracd kiaa1211,LOC107555764,LOC107737310,LOC107665299,LOC107556121 other downstream 971054 13423958 ~ 13447388 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other upstream 1743 14441533 ~ 14445925 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other upstream 553309 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other upstream 557335 14997125 ~ 15003202 (-)
LOC122325611 NA other upstream 1402608 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 1403108 15842898 ~ 15843118 (-)

Expression


Co-expression Network