si:ch211-222n4.2 (LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417)


Basic Information

Item Value
gene id si:ch211-222n4.2
gene name LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4511926 ~ 4524180 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU212347
tttttttttttttttttttttttttttttttAGCcgtttaaatgtctttattattgAAGCAATGCACAAACAGTTAAGGCCTTAGTGTACTACACTAAACAAAACAGATGATAActgatgtaaataaaaaaagacaaagaaagtaTTAATATATTGCCATCATTCCATAGAGGTGCGAGGATTATACTGGGCTGATAGTGCTGATGGGCATACGTTCTAAGCAGCCGAAAGGCAAGCCTGCTTCACGCTTTGAGCCCAGGTGTTCAGCAGTGCCGTCACCGAGTGCTTGTCGGGAAGCTGGAGGAGTTTAGAGGTCATGTTCTTATGCACACTCTGCAAGAAGGGGTTGG
>XM_043221211.1
GCAATATTAAACGCTCCAGCGGGAGAGAAAGAAGTGTACGGtctttgaaaacaaataaaggcGCGTTTAGGATTTGAGGTAAAACACGAGTTATGACGCAACGTGGTAGTGATACGTCATGCGCGTGACGTGGCGGGGAAGTTGTCTCAAAGCGGAATGGATACACGCTCGGCTTTGCTGCAGAGGAATATTGACTTGTTACAGAAGCAGCACAGAGAAACTCTGGGGAAATTACACggtgaaatagattttttaaaacgggaaaataaagAGCTGCAGTATAAGCTGATAATGGTTCTTCCGAAGTCGAGCAGTAAAGGATCCAGCCAGAGAATCTGTAAGCATACAGACAGCagcaagttccagagagacagaAGGAACTATCTGGAACAGACTTTAGAGGAAACCTGCTCACCACAAACCACAGAGATCAGCAGTCATTTACAATGTAGAGAAACCAGATCAAATTCCCTCACAGCCGATAGAATAGACAAAGCAGGGTTCATCACTTCTCTACAGCCTCTGATGATGCAGTGCAGCCCATCTCAGGCCCCTCGACCTCCCACCCTGCGGGAATGTGAGGTCATCATACGTCAGCTGTACAATGCTAACAGCCTGCAGTCCCAAGAGATCGAACGTGTTAAAGCTGTTCTCAAAGACATCGTGTTCAACAAGAAAATAACTGCAGAGAATTACATTTTGACCAAGTCTTATCTTGCTGATGGTAAAAGAGCTGACGAATCAGACACGTTTCCTCAGCTTTCTCTCCAAACGCTGCCTAAAGGACTACCTGTGTCTCAGGCTAGTAAAGCAGAGAAAGTGATCCTCCCTGCCCTCAAACAGCCCCTCAATAACATAGCAGACAGACACCGGAGGACTCAGGCCGTGCAGAGACGTCGACTACAGAGGACTCTGCACTGAAGGACCAGTCGTGTGGTCACGTGACTTCTGTGCTGCACATTTCAGAGTGAAACAGCcgtttaaatgtctttattattgAAGCAATGCACAAACAGTTAAGGCCTTAGTGTACTACACTAAACAAAACAGATGATAActgatgtaaataaaaaaagacaaagaaagtaTTAATATATTGCCATCATTCCATAGAGGTGCGAGGATTATACTGGGCTGATAGTGCTGATG

Function

NR:

description
coiled-coil domain-containing protein 74A-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212347 False 350 lncRNA 0.39 2 4511926 4524180
XM_043221211.1 True 1149 mRNA 0.45 7 4520965 4524036

Neighbor

gene id symbol gene type direction distance location
LOC122326553 si:dkey-1d7.3,LOC107565380,LOC107566205,LOC107722807 coding upstream 152623 4338972 ~ 4359303 (+)
LOC122326555 LOC107565381,LOC107708362 coding upstream 180572 4287203 ~ 4331354 (+)
LOC122326554 LOC107708345,LOC107565383,LOC107661188,LOC107566207,LOC107722811,LOC107684913 coding upstream 225501 4283196 ~ 4286425 (+)
rimbp2a si:ch73-287m6.1,LOC107565381,LOC107708362 coding upstream 283434 4207661 ~ 4228492 (+)
LOC122326660 NA coding upstream 305245 4106787 ~ 4206681 (+)
crkl crkl,LOC107706473,LOC107589229,LOC107700778,LOC107591716,LOC107722822,LOC107703602 coding downstream 14082 4538262 ~ 4544632 (+)
nefla LOC107700775,LOC107706475,LOC107589231,LOC107703600,LOC107591713,LOC107722831 coding downstream 30178 4554358 ~ 4557626 (+)
rpl17 rpl17,LOC107722835,LOC107700774,LOC107703598 coding downstream 56454 4580634 ~ 4583302 (+)
LOC122327010 NA coding downstream 56871 4581051 ~ 4581126 (+)
LOC122327008 NA coding downstream 57738 4581918 ~ 4581990 (+)
G143717 NA non-coding upstream 425400 4075527 ~ 4086526 (+)
LOC122326258 NA non-coding upstream 590207 3919733 ~ 3921719 (+)
G143664 NA non-coding upstream 708157 3803458 ~ 3803769 (+)
LOC122326834 NA non-coding upstream 742370 3763332 ~ 3769556 (+)
G143656 NA non-coding upstream 759728 3751599 ~ 3752198 (+)
G143745 NA non-coding downstream 27241 4551421 ~ 4552468 (+)
LOC122326582 NA non-coding downstream 39154 4563334 ~ 4578128 (+)
G143751 NA non-coding downstream 64546 4588726 ~ 4589152 (+)
G143826 NA non-coding downstream 227037 4751217 ~ 4751510 (+)
G143827 NA non-coding downstream 227727 4751907 ~ 4752259 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other upstream 125714 4132436 ~ 4386212 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other upstream 298154 4106801 ~ 4213772 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other upstream 807529 3701429 ~ 3704397 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 1191913 3297990 ~ 3320013 (+)
gnrh2 LOC107595723 other upstream 1681570 2829114 ~ 2830356 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 180977 4705157 ~ 4709441 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other downstream 206423 4730603 ~ 4745266 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 375310 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 423404 4947584 ~ 5028046 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 976923 5501103 ~ 5506433 (+)

Expression


Co-expression Network