G12848


Basic Information

Item Value
gene id G12848
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 129502 ~ 153337 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU14263
ACCGGTGTCCAGTCAGTGTCAGACACACTGATCAGATGCGTTTGCCTCATATGCTCCAGTCCCGTTAGTTACATTCTGTTTGCCTTCGCGTTATTATTGCCAAATCTGCGGGGTTGATGTGTTTAAACGCACGCTGTAGATTTAAATCCAGACATTTATTCACTCTCATATTCCACCCGGGCTGCTCTGCACCTGATGTCGGCATAGGCACGCGCTCGCAAGGATAATCATCTTAGAACTAGAGCCATGGAGACGGTCATTCACTTTATGAATGACTCTGCCGAGTTTTATAAATGGAGCCTTACCATAGCAGATAAGCGTGTGGAGAAATGGCCGATGATGTCGTCGCCGCTCCCCACCCTGGGGATCAGCGTTCTCTACCTGCTCTTCCTCTGGGTCGGACCCCTTTACATGCAGAACCGCGAGCCTTTTCAGCTCAGGAAAACCCTCATTGTGTACAACTTCAGCATGGTGCTGCTCAACTTCTACATCTTCAAAGAGCTGCTCCTGGGATCGAGAGCGGCCGGATACAGCTACCTCTGTCAGCCTGTGAACTACTCGAATGATGTTAATGAAGTCAGG
>TU14266
GTTTTCCTGCTCAACTCCCTGTATTTGATTGTAAGTATAACTGACTGCTGCAAACCTGAAATCAGGAAGACTAAAGCACACAATGAGCCCTCACAACAGCTGTAAATTACAAGCCATAATCAACACTGCTGAGTGCAAACGGACACCAGCGCTGACCCCAGCCCTGTCCGGAAGAACCACAAGGAATGACTTACATCAAAGGCATTCCTGCTCTGAAGGACGGGATTAAAGAAAAGTAGACTGGATCTTATTTTTGTGTTTGCTAAGTGGGACACAACTGATCTACAGACCGAAGGCGTATACTCACATACAGGACGGGCAGACGGAGCAGATTACAAAGAGAAGAAGAGCCGGAGAGTGGTGTGGGAATCATTGGCTCTGGACTGGAAAAGCCCAGGAGAAAAAAGCTTATGCTCAGACGAAGGAGAGGTCAAGAAATAAAAGCCATTTAATTCAGTTGGATAAGATGAGCTGCAGAATCATACGTAGTGCAGCAGGAATCAGAGTTCACTGATCACGTGATGAGAGTAAGTGACGAGATGACTGACAAGACCATGACAGAGGATTCGTTGCACAACAGAGCCTGAGCGTCTGATAAAATTTGGTCTCTATTTGCACTTTGAATATTGAGAGAGTACTGTTTGTACTTAAGACTAAGAGAAAACTGTGTTATTCATTTTTATTTATACTGTTTTTATTTCCATAATCAATTTGTGGAAAGAAATATTTTAGCAACATTTATATTTTAGTCAGACAAGACTTAAAGGGTTAGTTCACCCAAAAATGAAAATAACGTAATTTATTACTCACCCTGTCGTTCTACACCCGTAAGACCTTCGTTCATCTTCAGTACACAAATTAAGATATTTTTGATGAAATCCGATGGCTTGGTGAGGCCTCCAATGAGAGCAAAGCCATTCAAACTCTCAAGGTCCATAAAGGTACTAAAAACATATTTGAAACAGTTTATGTGAGTTCAGTGGTTCTACCTTAATATTATAAAGCGATAAGAATACCTTTTGTTCGCCAAAAAAAAAAAACAAAATAAGACTTTTCAACAATATCTATATGGGCCGATTTCAAAACACTGCTTCATGAAGCTTCTGAGCTTTATGAATCTTTTGTTTCGAATTAGTGATTCAGATTTCCTATCAAATGGCTAAACTGCTGAAATCACATGATTTTGGCGCTCCGATTCACTGATTTGATTCGTAAAGCTCCGAAGCAGTGTTTTGAAATCGGCCCATATAGATATTGTTAAAAAGTCTTTATTTTGTTTTTTTGGCGCA
>TU14264
GTTTTCCTGCTCAACTCCCTGTATTTGATTGTAAGTATAACTGACTGCTGCAAACCTGAAATCAGGAAGACTAAAGCACACAATGAGCCCTCACAACAGCTGTAAATTACAAGCCATAATCAACACTGCTGAGTGCAAACGGACACCAGCGCTGACCCCAGCCCTGTCCGGAAGAACCACAAGGAATGACTTACATCAAAGGCATTCCTGCTCTGAAGGACGGGATTAAAGAAAAGTAGACTGGATCTTATTTTTGTGTTTGCTAAGTGGGACACAACTGATCTACAGACCGAAGGCGTATACTCACATACAGGACGGGCAGACGGAGCAGATTACAAAGAGAAGAAGAGCCGGAGAGTGGTGTGGGAATCATTGGCTCTGGACTGGAAAAGCCCAGGAGAAAAAAGCTTATGCTCAGACGAAGGAGAGGTCAAGAAATAAAAGCCATTTAATTCAGTTGGATAAGATGAGCTGCAGAATCATACGTAGTGCAGCAGGAATCAGAGTTCACTGATCACGTGATGAGAGTAAGTGACGAGATGACTGACAAGACCATGACAGAGGATTCGTTGCACAACAGAGCCTGAGCGTCTGATAAAATTTGGTCTCTATTTGCACTTTGAATATTGAGAGAGTACTGTTTGTACTTAAGACTAAGAGAAAACTGTGTTATTCATTTTTATTTATACTGTTTTTATTTCCATAATCAATTTGTGGAAAGAAATATTTTAGCAACATTTATATTTTAGTCAGACAAGACTTAAAGGGTTAGTTCACCCAAAAATGAAAATAACGTAATTTATTACTCACCCTGTCGTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU14263 True 394 TUCP 0.40 3 129502 134925
TU14266 False 1289 lncRNA 0.39 2 151614 153337
TU14264 True 821 lncRNA 0.35 2 152082 153337

Expression


Co-expression Network