G12588


Basic Information

Item Value
gene id G12588
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 242917 ~ 245117 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU13947
TCTTTCTCCCATCCTGTATGTCCCATAAAAACGCATAAATAAAAAAAATAACTGTATTTTATAGGATGCTTGTATAGCATTTACCGTTTGTGGTTTTAATGTTTGAGGACAGTTGTGTGTGCTGTTACCAGGCAGACTGCTGTCAGCGGACGGACTCTCGATGAAGGCAGGGCTGTTAGGGTTTGAATTGTTTTGCTTCAGACCCAAAACTAACTGCAGATCAGATACGTTCATTCTGGCTGTCAGCTCCCCACTGCGGTCTCCAATCTCTTTTGAGATCTCCAGATGTTTTTCAGTGAAGCTCATGGCCTGCTCGTGGTTTCCCAGTGCGGTGTACGCGTTCCCTAAACTCCAGCACGCCCTCCCTTCTCCGATCCTGTCCTTAAGGTCCTGCGCTATGATGAGATGTTTGAGGTGATAGTCTATGGCTCTCTCATAGTCCTGCAGTAGCGTGTAGGTGTTGCCCAGACTGTAGCAGGCCTGAGCTTCCACGGCCCTGTCCTTCAACTGCCGCGCCAACTGCAGCGTCCGTCTGCGGGATAAACATCCAACAAAATGACCTCGAGATATGCTCTGAACACGCTTTAGACGACTGTCGCCTTTGGCTTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU13947 True 610 lncRNA 0.49 3 242917 245117

Neighbor

gene id symbol gene type direction distance location
CI01000001_00231916_00237164 NA coding upstream 5377 231155 ~ 237540 (+)
CI01000001_00205299_00213625 TGM1L3 coding upstream 28959 205299 ~ 213958 (+)
CI01000001_00089680_00091054 RNF146 coding upstream 151802 89680 ~ 91115 (+)
CI01000001_00337674_00339265 NA coding downstream 92164 337281 ~ 339350 (+)
CI01000001_00343451_00343828 NA coding downstream 98334 343451 ~ 344399 (+)
CI01000001_00351249_00352199 NA coding downstream 105434 350551 ~ 353522 (+)
CI01000001_00353909_00354838 NA coding downstream 108792 353909 ~ 354838 (+)
CI01000001_00400604_00401694 NA coding downstream 155308 400425 ~ 401924 (+)
G12583 NA non-coding upstream 36929 205672 ~ 205988 (+)
G12581 NA non-coding upstream 38186 204515 ~ 204731 (+)
G12579 NA non-coding upstream 39940 202771 ~ 202977 (+)
G12570 NA non-coding upstream 57764 184902 ~ 185153 (+)
G12569 NA non-coding upstream 58350 183448 ~ 184567 (+)
G12604 NA non-coding downstream 38418 283535 ~ 283735 (+)
G12606 NA non-coding downstream 40942 286059 ~ 302497 (+)
G12611 NA non-coding downstream 58030 303147 ~ 303452 (+)
G12627 NA non-coding downstream 113032 358149 ~ 358382 (+)
G12618 NA non-coding downstream 113754 358871 ~ 359756 (+)
G12614 NA other downstream 64027 309144 ~ 310941 (+)
CI01000001_00483853_00488761 VWA1 other downstream 233269 483853 ~ 488825 (+)
G13051 NA other downstream 798596 1043713 ~ 1045152 (+)
CI01000001_01668334_01670035 CAMK2N1B other downstream 1422903 1667762 ~ 1671167 (+)
CI01000001_03618075_03620436 NA other downstream 3371131 3618075 ~ 3621451 (+)

Expression


Co-expression Network