ubap1 (ubap1,LOC107661828,LOC107739682,LOC107754631,LOC107665242)


Basic Information

Item Value
gene id ubap1
gene name ubap1,LOC107661828,LOC107739682,LOC107754631,LOC107665242
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1192399 ~ 1199773 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221452.1
TACACCGCCAGTTCTGCTTTATCCGTCCGGACCGACTCGACAGCGAATTAACGAAAGGGTACGGGTGTTGTGGAAGTGGGCTATGAAGAGTAATGGGAGCGCAGGAGAGATATATGAACGCAATCGACAGGCCGACACAGATGACGTCTCCTCCCCAGCTCTTCTCTGATTGGTCGAACCTGTCGTCATTCAGCGGCAACGCATGTCGTCACACAGGAACCAAAGGAGGCGGTCGAACCAAGATGGCGTTCCGCGATGAAGCAGGAAATATACTCGGTTTTCAGTAGATCTCCTCATCTGAGAGCGTCGACCGGAGCTTTTATGTCCAAGGACAAGTGAGAGACCTATTTGGAGACTGAAGACAGAGCAGATACGGTTACTCTAAATGGCTGCGAGGAAGTCTGGATCAGATATCCACAACAACGGACCTGTCAGCTACCTTGATGATGTTCCTTTTAAGATCAATGAGAAGTTCCGCTGTCCCTCAAAAGTGGGTCTTCCCATTGGATTCTGTTTGTCTGATTGTAATGCCATACTTTCGGATCTGCAATATGACTTTAGTCTAGAGAGACGAAGCGTTCAGTGGGGGGAAGAGCTTGCCAAAGCGCGAGCTGCTGAGGCTCGAGCAGCAGAAGCTGCCCGAACAGACTCTGAAAACGAAAGGCAGGCTGCTGCTCAGGAAGCGGATGTTGGATTGGTTGGGGGGAAGAAAGCACGTCCCTCCGATGAGCAGGACGTTGTCCCACCGGCATTGAACCCCGTTTTAGCTGGCCTGCGGCATAACGCAATCCTCACGCCTCTCCCAGCCCCATCTTTTGGACCGACACGACCAGCACCTAGCAACCCAGCCCCCCAGAGTCTAAACTTAGCTGACTTTGAACGAGAGGAGGACCCTTTTGACAAACTAGAGCTTAAAACACTGGACGACAAAGAGGAGTTGCGGAATATTCTGCAGAGCCAACCGCAGTCGTCCGTTTCGCAGCCTCAGCTTCCTCCAGTAGAACATCGCCCCGCTTCTCCCAGCGATACGCCTCCTCTTCAGGCCAAAGCAGGAATCTTCCATAAACCCAATGGACTGGTTGGACTGCTGGACTTAGACCGGGGTGGGGTTGTGACCCCCCATGGACAGATTGATGCAGACCGCCCATGTAACATTCGCTCACTGACTTTCCCCAAGCTTTCAGACCCAGGTGACTCTCCCTCAGAACCGACTTTCAGCATTTACCCAGCAGCCCAACCACGCAGCCTATCCAATGGCACTCCACCATCTCTGCAGAGAACGGCATCAAGTACCAACACAACACTCCCACAAGAGCAACCTGTCTTCCCTCAGAATGGGACACAAAAGCAGTCAAACCAGGTCACAGCGACTAACCATCCACCTGCTACCACAATCCTGCACGGCCTCTCTCCCAGCGAAAGACAGTGTGTGGAGACGATTGTGGGCATGGGTTATTCATATGAGGGTGTACTCAAAGCCATGCAGAGACAAGGACAGAATGTGGAACAGGTGCTGGAATACCTGTTTACTCACAGTCGACTGTGCGATAGAGGTTTTGATGCGACTGCTGTGGAGGAGTGCTTGGAGATGTACCAGGGTTCAGAGGAAAAGTCTTTGGAGTTTCTGCAGCTGATGTCTCGGTTTGGAGAAATGGGCTTTGAGAGGGACACAATTAAAGAGGTACTGCTCGTGCACAATAATGACCAGGACAAGGCACTAGAGGATCTGATGGCCCGTGCAGCTGCGAGCTGAGCCCAAAGAGTCTCCCCTCCTCGAGCCAGCTCTCCTTTGGCCCTCGGAGGGGTTCTGGCTGTGGAAGGATGGGATTCTTTTATCTCTAAGACAAGACGACTGATTTTGTACCCTAATAAAGATATACCTCTTGAGGTAGGGATTGACTGCACCACCCAACAGTGCATTCATCCCTCCTCAGCTGTATGTCTGTTAAGTGATCTTAGAATGGTGTTGAGTGGAAGGAGCTGACTACTCCTCCAAGAATCGGCATTGGTTAGTGTCTCTATTGCCATGGTGACGGGCTAGAATGGGCGTTGCTGGATGAACAGAACCAAGCCGAGCCCCACTGACAGAATACTGGGCCGGAATGACACTCAAAGCTATTACGCTGCCATCTCCCGCTGCTGGATACAGGCTTTCGAAACTGAAACCTGAACGCTCATAAACTCAACCCATGGCAGAACAGAGACCCCACAGAAGTGCCCTCTCTCTATTCTGTCTCTGCTGTTCATACATTGTTTATACGTTTCGACAGGCGGAAACACTTTATCTTTCTTCACTTGTCCTTTTTGAGATTGTGTTTCTTTGCTCTTTGTTTAGGAACTGCTTTAACAGTACTAATAATCATTACGTAagttcacagaaaacaaaaaaactgcagtAAACTTTTGCCCAGTTGGCTTTTGCACTGGAATGAACACATTTGGCAAGAGAAATTGGCAAGTTCGGCTGGAGCTGCAAAATTTAAACCATGCCGCCAAATTTTCAAAAATTGACATGCAAATACTGCACAGGCACACTGAATCACAGAtgttaatataaacatatttaaaaatctgtaaagaTACACTGTTGGTTTCCATCTGTAATAAAGAAATTGAGAAACTTAA

Function

symbol description
ubap1 Predicted to enable ubiquitin binding activity. Acts upstream of or within axon extension. Predicted to be located in cytosol and endosome. Predicted to be part of ESCRT I complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human UBAP1 (ubiquitin associated protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24629 UBAP1; ubiquitin-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221452.1 True 2625 mRNA 0.49 8 1192399 1199773

Neighbor

gene id symbol gene type direction distance location
nudt2 nudt2,LOC107739745,LOC107661859,LOC107600925,LOC107579639,LOC107584670,LOC107754633,LOC107665228 coding upstream 8329 1180455 ~ 1184070 (+)
ell2 ell2,LOC107739680,LOC107665220,LOC107600927,LOC107754629 coding upstream 39895 1139245 ~ 1152504 (+)
pcsk1 LOC107739678,LOC107661910,LOC107600928,LOC107665244 coding upstream 60774 1116591 ~ 1131625 (+)
cd8a NA coding upstream 115263 1074249 ~ 1077136 (+)
cd8b LOC107754642,LOC107665224,LOC107600931,LOC107739674,LOC107662663 coding upstream 124036 1064842 ~ 1068363 (+)
dcaf12 dcaf12,LOC107661821,LOC107739683,LOC107600922,LOC107754635,LOC107584538,LOC107665237 coding downstream 3621 1203394 ~ 1212789 (+)
ubap2a ubap2a,ubap2,LOC107665236,LOC107661806 coding downstream 14127 1213900 ~ 1227997 (+)
mlnl mlnl coding downstream 38682 1238455 ~ 1241794 (+)
aqp7 aqp7,LOC107661734,LOC107600917,LOC107739721 coding downstream 48341 1248114 ~ 1255051 (+)
kiaa1328 kiaa1328,LOC107600915,LOC107661705 coding downstream 58403 1258176 ~ 1277613 (+)
G142965 rfesd,LOC107661841,LOC107600903,LOC107735162 non-coding upstream 13760 1108322 ~ 1178639 (+)
G142964 NA non-coding upstream 85447 1106746 ~ 1106952 (+)
G142963 NA non-coding upstream 86582 1105485 ~ 1105817 (+)
G142954 NA non-coding upstream 90292 1090243 ~ 1102107 (+)
G142933 NA non-coding upstream 109126 1082167 ~ 1083273 (+)
G142952 NA non-coding downstream 963 1200736 ~ 1201244 (+)
G142950 NA non-coding downstream 1603 1201376 ~ 1202423 (+)
G142977 LOC107662880 non-coding downstream 15817 1215590 ~ 1246809 (+)
G142943 NA non-coding downstream 29775 1229548 ~ 1236155 (+)
G143139 wdr34,LOC107736865,LOC107584613 non-coding downstream 562609 1762382 ~ 1762837 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 36257 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 136474 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 386293 735722 ~ 806106 (+)
LOC122326311 NA other downstream 28225 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 830331 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1033886 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 1629341 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 2098217 3297990 ~ 3320013 (+)

Expression


Co-expression Network