G12614


Basic Information

Item Value
gene id G12614
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 309144 ~ 310941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU13987
TGACTCATGCAAATACTCTTACGTGCCTGTATGAATGAGCAAGAGTGCGAGTTGTCTGTGGCAACCTTTGCATGCTCAACAGGTGTTGAAGGGCATGTATGTGTGTGTGTTTGTTACCTTGGCCTGCTCAACAGGTGTGTCGAGTGTCTCTCTGTATACCACAGTGAAGGAGATGCTCTTTGGCTCGGAAGAGAAAACCCAGCTAATGATGGGCCCGTGGTCGCCCACGGTGATGGGAATGGTGCTATAGCAGCTGGACTTGACAAAAAGCTCACGGGAACCTTCGCCGAAATGAAGAATCTCATCTATATCCAGAGGCACAGAGGCACTACAGGAAGACATGCAAGGAAACAACAGTGATAATAATAATAGTGGAGCAGGAGTGAGTGAGTGAGTGAGTGAGTGTGTTTGTGTGAGTGAGTGAGTGAGTGAGTGAGTGTGTTTGTGTGTGTTTGTGTGAGTGTGTGTGTTTGTGTGTGTGAGTGAGTAAATGTGTGTTTTTGTGAGTGAGTGTGTGTGTTTGTGTGAGTGTGTTTGTGTGAGTGAGTGTGTGTGTTTGTGTGTGTGAGTGAGTGTGTGTTTGTGTGTGTGTGTGTGAGTGAGTGCATGTGTTTGTGTGTGTGAGTGAGTGTGTGTTTGTGTGAGTGTGTGTGTGTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU13987 True 659 TUCP 0.47 2 309144 310941

Neighbor

gene id symbol gene type direction distance location
CI01000001_00231916_00237164 NA coding upstream 71604 231155 ~ 237540 (+)
CI01000001_00205299_00213625 TGM1L3 coding upstream 95186 205299 ~ 213958 (+)
CI01000001_00089680_00091054 RNF146 coding upstream 218029 89680 ~ 91115 (+)
CI01000001_00337674_00339265 NA coding downstream 26340 337281 ~ 339350 (+)
CI01000001_00343451_00343828 NA coding downstream 32510 343451 ~ 344399 (+)
CI01000001_00351249_00352199 NA coding downstream 39610 350551 ~ 353522 (+)
CI01000001_00353909_00354838 NA coding downstream 42968 353909 ~ 354838 (+)
CI01000001_00400604_00401694 NA coding downstream 89484 400425 ~ 401924 (+)
G12611 NA non-coding upstream 5692 303147 ~ 303452 (+)
G12606 NA non-coding upstream 6647 286059 ~ 302497 (+)
G12604 NA non-coding upstream 25409 283535 ~ 283735 (+)
G12588 NA non-coding upstream 64027 242917 ~ 245117 (+)
G12583 NA non-coding upstream 103156 205672 ~ 205988 (+)
G12627 NA non-coding downstream 47208 358149 ~ 358382 (+)
G12618 NA non-coding downstream 47930 358871 ~ 359756 (+)
G12628 NA non-coding downstream 49028 359969 ~ 360217 (+)
G12629 NA non-coding downstream 61823 372764 ~ 373485 (+)
G12648 NA non-coding downstream 103555 414496 ~ 416841 (+)
CI01000001_00483853_00488761 VWA1 other downstream 167445 483853 ~ 488825 (+)
G13051 NA other downstream 732772 1043713 ~ 1045152 (+)
CI01000001_01668334_01670035 CAMK2N1B other downstream 1357079 1667762 ~ 1671167 (+)
CI01000001_03618075_03620436 NA other downstream 3305307 3618075 ~ 3621451 (+)
G15794 NA other downstream 4750277 5061218 ~ 5064704 (+)

Expression


Co-expression Network