G12618


Basic Information

Item Value
gene id G12618
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 358871 ~ 359756 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU13994
TCCAGATAAAAAGTTTTATTGATTTTCATAATTTGTACATGCATATAGATCGACTTGGTTGGGAGAAAACGCTTCAGTTTTTTAAAGTGGTACTCAGTGCTGTTGGTTAGGTAAAAGGGCACATGGGTGCTTTATGACAAGTGCTCTTTAAATAAGTCTTTACTAAAAAATCTGTCCCTGACATCTCAGTAAACAAGTTGTGCTTGTTTTAAACCTTCACCCACCATTTCATGAGATCTGCGAACAGATTTTGTGCAACATTTCTGTATACTTTTTTAGCATTTGCATATCAAGATTTACAGTTTCTTCATTTCAAGATATGTAATTGATCCCTGCTTCTTTTTTTTTGCATGGTGTCCACTGACCATCCACTGATACTGATTACAACAAAATCACAGATAGTCTTTTGTTGTTTACAAGAGAAATCGCTTTATAATATGTCCTATATAGGATACTTGGTTTTCCATGAGCCCCATGACATATTGATTGTTTGTATCTCACAGGGCTGGGATGGAAACAGCTACATGATGCAGCAGCACTTACAGGGCCGTACCGAC
>TU13993
GCATATAGATCGACTTGGTTGGGAGAAAACGCTTCAGTTTTTTAAAGTGGTACTCAGTGCTGTTGGTTAGGTAAAAGGGCACATGGGTGCTTTATGACAAGTGCTCTTTAAATAAGTCTTTACTAAAAAATCTGTCCCTGACATCTCAGTAAACAAGTTGTGCTTGTTTTAAACCTTCACCCACCATTTCATGAGATCTGCGAACAGATTTTGTGCAACATTTCTGTATACTTTTTTAGCATTTGCATATCAAGATTTACAGTTTCTTCATTTCAAGATATGTAATTGATCCCTGCTTCTTTTTTTTTGCATGGTGTCCACTGACCATCCACTGATACTGATTACAACAAAATCACAGATAGTCTTTTGTTGTTTACAAGAGAAATCGCTTTATAATATGTCCTATATAGGATACTTGGTTTTCCATGAGCCCCATGACATATTGATTGTTTGTATCTCACAGGGCTGGGATGGAAACAGCTACATGATGCAGCAGCACTTACAGGGCCGTACCGACAGCTCGTGTTACGAGCCTATTGATGAACAGAGGAGTTTTCAAAAAAAAACAAAAACAAATCAGCCCTTTATCAACAGCTCTACAAACAAATCCTCAAAACTTCACTTCATTTGATAAGGCAGAGGAAAGACATAGGTAGCAGCATTTCAGATTTAAAGAGATTCTGCTTATTACGTCATGATTCACACTAAAAACTGCTGGGTTAAAAACAACCCAAGTTGGGTTGAAAATGGACAAAGCCAGTGATTGGGTTGTTTTAACCCAGAGGTTGGGTTAAAGGGATAGTTCGCCCAAAAATGACAATTCTGTCATTAATTACTCACCCTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13994 False 557 lncRNA 0.50 1 358871 359427
TU13993 True 846 lncRNA 0.32 1 358911 359756

Neighbor

gene id symbol gene type direction distance location
CI01000001_00353909_00354838 NA coding upstream 4033 353909 ~ 354838 (+)
CI01000001_00351249_00352199 NA coding upstream 5349 350551 ~ 353522 (+)
CI01000001_00343451_00343828 NA coding upstream 14472 343451 ~ 344399 (+)
CI01000001_00337674_00339265 NA coding upstream 19521 337281 ~ 339350 (+)
CI01000001_00231916_00237164 NA coding upstream 121331 231155 ~ 237540 (+)
CI01000001_00400604_00401694 NA coding downstream 40669 400425 ~ 401924 (+)
CI01000001_00426295_00431004 IYD coding downstream 66309 426065 ~ 431232 (+)
CI01000001_00433013_00435064 NA coding downstream 73257 433013 ~ 435539 (+)
CI01000001_00436821_00439097 NA coding downstream 77065 436731 ~ 439752 (+)
CI01000001_00440891_00444667 HTR6 coding downstream 81135 440891 ~ 444983 (+)
G12627 NA non-coding upstream 489 358149 ~ 358382 (+)
G12611 NA non-coding upstream 55419 303147 ~ 303452 (+)
G12606 NA non-coding upstream 56374 286059 ~ 302497 (+)
G12604 NA non-coding upstream 75136 283535 ~ 283735 (+)
G12588 NA non-coding upstream 113754 242917 ~ 245117 (+)
G12628 NA non-coding downstream 213 359969 ~ 360217 (+)
G12629 NA non-coding downstream 13008 372764 ~ 373485 (+)
G12648 NA non-coding downstream 54740 414496 ~ 416841 (+)
G12656 NA non-coding downstream 59206 418962 ~ 419235 (+)
G12614 NA other upstream 47930 309144 ~ 310941 (+)
CI01000001_00483853_00488761 VWA1 other downstream 118630 483853 ~ 488825 (+)
G13051 NA other downstream 683957 1043713 ~ 1045152 (+)
CI01000001_01668334_01670035 CAMK2N1B other downstream 1308264 1667762 ~ 1671167 (+)
CI01000001_03618075_03620436 NA other downstream 3256492 3618075 ~ 3621451 (+)
G15794 NA other downstream 4701462 5061218 ~ 5064704 (+)

Expression


Co-expression Network