G12685


Basic Information

Item Value
gene id G12685
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 524474 ~ 538363 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU14086
TTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTTTGGAACGACATGAGGGTGATAAATGACAGAATTTTCATTTTTGGGTGAACTATCTCTTTAAGAACTTTTTTGAAGATTTTATGGTGCGTTTGTGTTTTTTGGAGCTTGACAGCCCTTGGTTATGGAAGCTTGTTTCCGCCACTAAATAAAAAATTTAAAAGGTAACTGCGAGTTTTTAACTCAGAATTGCGAGATGTAAACTTACAATTGTGAGTTATAAAGTCATAAACTCGCAATTCTGAGAAAAAACATCAGTCTTTTTTCCCCTCACAACTGGACATTATATAATACGCAATTGTAAGTTTATATCTCACAATTCTGATTTTATATCATGCAATTCTGAATTTATAACTCGCAATTCTGACTTCATATCTCGCAAAAAAAAAAGTCAGAATTGTGAGATAAAAAGTTGCAATTACCTTTTTTATTATTTTTTTTTATTTAGTGGCGAAAACAAGCTTCCATACCTGGTGAGCATTTAATATCATTTTATGGAAAAGAGAAGATTGTGCACAATTTTTTCTTTTGTTTTCCACAGAAGGCAGAAAGTCATAGAAGGTTTAGAACAGCATGAGGATGAGTAAATGATGGACTGAATGGTGAACTACTCCAATAGGGCCCTGTGGCACGTTTTGAGCCGGTAAATGTGTGTATTTGTGTTTTAGTCTCAGAGCAGCTGGGCTGCCTACAGTACTACAGTTCATCATTGACTTCCTTCAACCTCTTCTCCTCCAGGAAGGCCACCAGTGAATCCCTCATGTCCACCACGTCCAGCATCTCCTGCAGGATCCGCTCCTCCTCTACTCGCTGCTCAGGGGTCTTCTCAGTGTCTACACACACACAAGAACAAAGCAACATGTCAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14086 True 900 lncRNA 0.38 2 524474 538363

Neighbor

gene id symbol gene type direction distance location
CI01000001_00483853_00488761 VWA1 coding upstream 35649 483853 ~ 488825 (+)
CI01000001_00440891_00444667 HTR6 coding upstream 79491 440891 ~ 444983 (+)
CI01000001_00436821_00439097 NA coding upstream 84744 436731 ~ 439752 (+)
CI01000001_00433013_00435064 NA coding upstream 88935 433013 ~ 435539 (+)
CI01000001_00426295_00431004 IYD coding upstream 93242 426065 ~ 431232 (+)
CI01000001_01088316_01091350 TSHZ2 coding downstream 549953 1088316 ~ 1091578 (+)
CI01000001_01168378_01169553 NA coding downstream 629154 1167517 ~ 1169642 (+)
CI01000001_01209204_01212045 PFDN4 coding downstream 670841 1209204 ~ 1212252 (+)
CI01000001_01248946_01251200 NA coding downstream 710583 1248946 ~ 1252096 (+)
CI01000001_01357469_01365104 NA coding downstream 818904 1357267 ~ 1365576 (+)
G12674 NA non-coding upstream 19725 504487 ~ 504749 (+)
G12664 NA non-coding upstream 56041 468102 ~ 468433 (+)
G12656 NA non-coding upstream 105239 418962 ~ 419235 (+)
G12648 NA non-coding upstream 107633 414496 ~ 416841 (+)
G12686 NA non-coding downstream 1333 539696 ~ 545356 (+)
G12698 NA non-coding downstream 14090 552453 ~ 552967 (+)
G12699 NA non-coding downstream 14654 553017 ~ 553949 (+)
G12710 NA non-coding downstream 35329 573692 ~ 573956 (+)
G12711 NA non-coding downstream 35870 574233 ~ 574462 (+)
G12614 NA other upstream 213533 309144 ~ 310941 (+)
G13051 NA other downstream 505350 1043713 ~ 1045152 (+)
CI01000001_01668334_01670035 CAMK2N1B other downstream 1129657 1667762 ~ 1671167 (+)
CI01000001_03618075_03620436 NA other downstream 3077885 3618075 ~ 3621451 (+)
G15794 NA other downstream 4522855 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 4748386 5279837 ~ 5287698 (+)

Expression


Co-expression Network