G12963


Basic Information

Item Value
gene id G12963
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 605101 ~ 606584 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU14404
CTTATTCAAGGTTAAACACAACACTTTTTTTTTTTTTTTTGAACCCATGCTATGTCAAGGGATTTTTCTCATTTTGGTCGTGGGACCACCATAGTTACCAATTAAAGCACCAAAACCCACCGCTGTCACATACAGCTAACCAGTTTATTTGAGATGTGGTTTAGTTTGCCAGAGGCGAGGTTAAATGCGAAGTTTTATCCAGTCCTTTAATTGGTGTGCCACAGAAATCAAATGTCCTGTGGGATAGAAATCAGGTCCTAATTTATGTTTGGATTAAACTGGATGATTCCCTGGTCTAATCTCAGATTTACAAGTTTTCAAGATATATTTGAGGCTTAAGCAATTTCCAGTATCTTTCAAATATGGAGAGATTTATCAAAAATTTGGATGCTGTATTTGGAATTGATGTTGTGGAGTCAAACTTTACTACCAATATTGCTTGGTTTATGAATAATAATGATACCTTATTACTTTTCTTAGCATTCAGACTAATGGTTGAGCTTTTTCCCCACTTGGACCAGTAAGTAACCACCTAGAACACCCTAACAACCTTAAAGCAATGCCTTGGCATGCACTAATCGTTATTCAGAAAATGTACAAAATATACTCTTATTAACCTTTCAGTTTCATTATTGTGTTGTTTTATTGTTCAAATAGCCCTTTCAATGATGCATTTGTTCCTAATGACATTATCTGTCAGCCAGACTTCATAAACCACTGACTCAACACAACATGAATTCAATGAATGAATGTCCTGTTTCCAGTTGTTGTTTACCATAGATCAATGATGCTTTACGTAATGTCAGAATCCTTCTTCCGATGATCTTTCATCACTATCCGAACCTCAATAAGGTCGTTCCCGGACACGACTGCGGCTGTCGTCATGGATCAATCAGAGCCTAATATTCACACCTCGCTTGGCAAATTAGATGTGCCCTTAATGTAATGACTGGGCCTTTGCTTTGACATTAGTGAGGCATGAGTTGCTCTTTGATTACCCAGAGTTCACCCTGATTCATGTCATTGTGGTTTAGTGTTGTCAAACGTGTAAATTCACCCTGCTACTTATAGTTAGAGCTCCATTAATTGGACTAACTAGACATCCTTGTTATTGCAGGATGTTAGTTTTTCCTTGATACTGAATGGTATACACCCAGAAATGAAACATTCATGTAATCTGGAGCCCATATGGTTGAGGACATACTAATGAGCTGTTGTTTCTCTCTGTTTTAGTTTTCTTAAACAATTTTTCACTGGGACTCAGTCAAAACTATCATACATTGCAACAGATTGCATTTTTTTGCAGGAATAGGGCCTAACTGGTTGAAATCTTTATGAACATTCACATTAAGTCTGTCTGACCCAATGTGACAGACGTAAAATGTTATTACATCTTAGGTATGTAGGTAGGTATTTATGTTTGTTTATTTATTTATTTTTATCTTTATTTATTTATTTAT

Function

NR:

description
PREDICTED: cocaine- and amphetamine-regulated transcript protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14404 True 1460 lncRNA 0.36 2 605101 606584

Neighbor

gene id symbol gene type direction distance location
CI01000001_00580789_00602408 SRC coding downstream 2473 579076 ~ 602628 (-)
CI01000001_00538192_00559082 MICAL1 coding downstream 46019 537593 ~ 559082 (-)
CI01000001_00506140_00517386 CAMK1GB, CAMK1G coding downstream 87715 505754 ~ 517386 (-)
CI01000001_00500347_00500698 G0S2 coding downstream 104403 500083 ~ 500698 (-)
CI01000001_00493196_00498517 OTUD3 coding downstream 106584 492765 ~ 498517 (-)
CI01000001_00636063_00642086 KCNG1 coding upstream 29458 636042 ~ 642379 (-)
CI01000001_00716122_00741331 NA coding upstream 109519 716103 ~ 741620 (-)
CI01000001_00754687_00806154 ATP9A coding upstream 147981 754565 ~ 806542 (-)
CI01000001_00808831_00814314 SALL4 coding upstream 201354 807938 ~ 814641 (-)
CI01000001_00839822_00841040 NA coding upstream 233046 839630 ~ 842421 (-)
G12955 NA non-coding downstream 100053 504849 ~ 505048 (-)
G12946 NA non-coding downstream 191153 413684 ~ 413948 (-)
G12945 NA non-coding downstream 198942 405331 ~ 406159 (-)
G12896 NA non-coding downstream 245362 358871 ~ 359739 (-)
G12907 NA non-coding upstream 7636 614220 ~ 711316 (-)
G12997 NA non-coding upstream 211203 817787 ~ 818127 (-)
G12999 NA non-coding upstream 213805 820389 ~ 820588 (-)
G13009 NA non-coding upstream 222784 829368 ~ 829618 (-)
G13236 NA non-coding upstream 253655 860239 ~ 860528 (-)
CI01000001_00362143_00378213 NA other downstream 207968 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 347584 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 470176 122814 ~ 131380 (-)
G14104 NA other upstream 1157085 1763669 ~ 1771468 (-)
G14219 NA other upstream 1387626 1994210 ~ 1994898 (-)
G14228 NA other upstream 1449390 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 1652805 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 3785730 4392314 ~ 4399804 (-)

Expression


Co-expression Network