Gene
RNA
| Item | Value |
|---|---|
| gene id | G13009 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 829368 ~ 829618 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU14450 | True | 251 | lncRNA | 0.34 | 1 | 829368 | 829618 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_00808831_00814314 | SALL4 | coding | downstream | 14727 | 807938 ~ 814641 (-) |
| CI01000001_00754687_00806154 | ATP9A | coding | downstream | 22826 | 754565 ~ 806542 (-) |
| CI01000001_00716122_00741331 | NA | coding | downstream | 87748 | 716103 ~ 741620 (-) |
| CI01000001_00636063_00642086 | KCNG1 | coding | downstream | 186989 | 636042 ~ 642379 (-) |
| CI01000001_00580789_00602408 | SRC | coding | downstream | 226740 | 579076 ~ 602628 (-) |
| CI01000001_00839822_00841040 | NA | coding | upstream | 10012 | 839630 ~ 842421 (-) |
| CI01000001_00872245_00878013 | ZFP64 | coding | upstream | 41262 | 870806 ~ 878013 (-) |
| CI01000001_00925612_00928679 | NA | coding | upstream | 95822 | 925440 ~ 928949 (-) |
| CI01000001_01030701_01030988 | NA | coding | upstream | 200636 | 1030254 ~ 1031164 (-) |
| CI01000001_01033836_01034518 | NA | coding | upstream | 203718 | 1033336 ~ 1034920 (-) |
| G12999 | NA | non-coding | downstream | 8780 | 820389 ~ 820588 (-) |
| G12997 | NA | non-coding | downstream | 11241 | 817787 ~ 818127 (-) |
| G12907 | NA | non-coding | downstream | 118052 | 614220 ~ 711316 (-) |
| G12963 | NA | non-coding | downstream | 222784 | 605101 ~ 606584 (-) |
| CI01000001_00538192_00559082 | MICAL1 | non-coding | downstream | 275616 | 537593 ~ 559082 (-) |
| G13236 | NA | non-coding | upstream | 30621 | 860239 ~ 860528 (-) |
| G13262 | NA | non-coding | upstream | 86630 | 916248 ~ 916447 (-) |
| G13264 | NA | non-coding | upstream | 89621 | 919239 ~ 919520 (-) |
| G13265 | NA | non-coding | upstream | 91297 | 920915 ~ 921145 (-) |
| CI01000001_00362143_00378213 | NA | other | downstream | 432235 | 361614 ~ 378213 (-) |
| CI01000001_00238241_00249437 | NA | other | downstream | 571851 | 238241 ~ 249437 (-) |
| CI01000001_00124107_00131285 | ELOVL4B | other | downstream | 694443 | 122814 ~ 131380 (-) |
| G14104 | NA | other | upstream | 934051 | 1763669 ~ 1771468 (-) |
| G14219 | NA | other | upstream | 1164592 | 1994210 ~ 1994898 (-) |
| G14228 | NA | other | upstream | 1226356 | 2055974 ~ 2056478 (-) |
| CI01000001_02258523_02262621 | NA | other | upstream | 1429771 | 2258442 ~ 2263103 (-) |
| CI01000001_04395469_04399381 | FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A | other | upstream | 3562696 | 4392314 ~ 4399804 (-) |
