Gene
RNA
| Item | Value |
|---|---|
| gene id | G13410 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 1252995 ~ 1253293 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU14935 | True | 299 | lncRNA | 0.34 | 1 | 1252995 | 1253293 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_01199556_01205086 | NA | coding | downstream | 47909 | 1199498 ~ 1205086 (-) |
| CI01000001_01158947_01164142 | ZNF217 | coding | downstream | 87844 | 1158398 ~ 1165151 (-) |
| CI01000001_01068423_01079855 | NA | coding | downstream | 172378 | 1067640 ~ 1080617 (-) |
| CI01000001_01056812_01066005 | NA | coding | downstream | 186872 | 1056452 ~ 1066123 (-) |
| CI01000001_01033836_01034518 | NA | coding | downstream | 218320 | 1033336 ~ 1034920 (-) |
| CI01000001_01293807_01304836 | CBLN4 | coding | upstream | 40405 | 1293698 ~ 1304836 (-) |
| CI01000001_01313263_01351961 | NA | coding | upstream | 59394 | 1312687 ~ 1352235 (-) |
| CI01000001_01368611_01369774 | IRX7 | coding | upstream | 115112 | 1368405 ~ 1369799 (-) |
| CI01000001_01377825_01378304 | NA | coding | upstream | 123499 | 1376792 ~ 1378304 (-) |
| CI01000001_01421483_01453330 | NA | coding | upstream | 167637 | 1420930 ~ 1453330 (-) |
| G13409 | NA | non-coding | downstream | 647 | 1252125 ~ 1252348 (-) |
| G13361 | NA | non-coding | downstream | 18199 | 1188474 ~ 1234796 (-) |
| G13364 | NA | non-coding | downstream | 37485 | 1186160 ~ 1215510 (-) |
| G13370 | NA | non-coding | downstream | 137226 | 1086803 ~ 1115769 (-) |
| G13371 | NA | non-coding | downstream | 159135 | 1092516 ~ 1093860 (-) |
| G13415 | NA | non-coding | upstream | 5231 | 1258524 ~ 1258893 (-) |
| G13618 | NA | non-coding | upstream | 157594 | 1410887 ~ 1411156 (-) |
| G13619 | NA | non-coding | upstream | 158151 | 1411444 ~ 1411651 (-) |
| G13582 | NA | non-coding | upstream | 302950 | 1556243 ~ 1576197 (-) |
| G13670 | NA | non-coding | upstream | 394769 | 1648062 ~ 1648288 (-) |
| CI01000001_00362143_00378213 | NA | other | downstream | 855862 | 361614 ~ 378213 (-) |
| CI01000001_00238241_00249437 | NA | other | downstream | 995478 | 238241 ~ 249437 (-) |
| CI01000001_00124107_00131285 | ELOVL4B | other | downstream | 1118070 | 122814 ~ 131380 (-) |
| G14104 | NA | other | upstream | 510376 | 1763669 ~ 1771468 (-) |
| G14219 | NA | other | upstream | 740917 | 1994210 ~ 1994898 (-) |
| G14228 | NA | other | upstream | 802681 | 2055974 ~ 2056478 (-) |
| CI01000001_02258523_02262621 | NA | other | upstream | 1006096 | 2258442 ~ 2263103 (-) |
| CI01000001_04395469_04399381 | FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A | other | upstream | 3139021 | 4392314 ~ 4399804 (-) |
