Gene
RNA
| Item | Value |
|---|---|
| gene id | G13671 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 1649192 ~ 1649430 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU15275 | True | 239 | lncRNA | 0.47 | 1 | 1649192 | 1649430 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_01637015_01638058 | FAM43B | coding | downstream | 11134 | 1636695 ~ 1638058 (-) |
| CI01000001_01582644_01584095 | NA | coding | downstream | 64752 | 1582644 ~ 1584440 (-) |
| CI01000001_01565290_01569360 | PINK1 | coding | downstream | 79832 | 1565290 ~ 1569360 (-) |
| CI01000001_01555180_01558113 | AGMAT | coding | downstream | 91079 | 1554301 ~ 1558113 (-) |
| CI01000001_01476453_01500640 | NA | coding | downstream | 148224 | 1475534 ~ 1500968 (-) |
| CI01000001_01707363_01743870 | VWA5B1 | coding | upstream | 57659 | 1707089 ~ 1743870 (-) |
| CI01000001_01757774_01758445 | NA | coding | upstream | 107759 | 1757189 ~ 1759443 (-) |
| CI01000001_01760676_01761671 | CPTP | coding | upstream | 110736 | 1760166 ~ 1761671 (-) |
| CI01000001_01772744_01773670 | NA | coding | upstream | 122901 | 1772331 ~ 1773670 (-) |
| CI01000001_01873684_01874535 | NA | coding | upstream | 224210 | 1873640 ~ 1874535 (-) |
| G13670 | NA | non-coding | downstream | 904 | 1648062 ~ 1648288 (-) |
| G13582 | NA | non-coding | downstream | 72995 | 1556243 ~ 1576197 (-) |
| G13619 | NA | non-coding | downstream | 237541 | 1411444 ~ 1411651 (-) |
| G13618 | NA | non-coding | downstream | 238036 | 1410887 ~ 1411156 (-) |
| G13415 | NA | non-coding | downstream | 390299 | 1258524 ~ 1258893 (-) |
| G13656 | NA | non-coding | upstream | 10825 | 1660255 ~ 1660709 (-) |
| G13674 | NA | non-coding | upstream | 16994 | 1666424 ~ 1667059 (-) |
| G13678 | NA | non-coding | upstream | 26376 | 1675806 ~ 1676078 (-) |
| G13679 | NA | non-coding | upstream | 27109 | 1676539 ~ 1676893 (-) |
| G14096 | NA | non-coding | upstream | 99676 | 1749106 ~ 1753231 (-) |
| CI01000001_00362143_00378213 | NA | other | downstream | 1252059 | 361614 ~ 378213 (-) |
| CI01000001_00238241_00249437 | NA | other | downstream | 1391675 | 238241 ~ 249437 (-) |
| CI01000001_00124107_00131285 | ELOVL4B | other | downstream | 1514267 | 122814 ~ 131380 (-) |
| G14104 | NA | other | upstream | 114239 | 1763669 ~ 1771468 (-) |
| G14219 | NA | other | upstream | 344780 | 1994210 ~ 1994898 (-) |
| G14228 | NA | other | upstream | 406544 | 2055974 ~ 2056478 (-) |
| CI01000001_02258523_02262621 | NA | other | upstream | 609959 | 2258442 ~ 2263103 (-) |
| CI01000001_04395469_04399381 | FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A | other | upstream | 2742884 | 4392314 ~ 4399804 (-) |
